Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0010250

Physical Location & Seq

Genomic Coordinates Forward (+)

15182868 .. 15185678

Gene Structure 2811 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G177500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGGCCTCTTCCTCCTCCACTCTTGTGCTCTCAACCCTTTTCTCTTACCATCCTCACCAAACCCTAAACCCCAACAAGAACAAGAGCCCCTTCTCATCACATACAAAGAGACCCTTCTCATCCCTCACCCTCAAAGTTTCAACCTTTGTCAAACCTAAACAACCCCCTCCCTTTCACAGCCCCCATAATCATCAAATTCGATTGTCCCGCCAATTTCGTGCCTACATCACCGTTAGAGATGGTGCTGATGATGGTGGTGGTGGTGATGGCGATGGAAATGAGCAACCAGTGGTGGGCGAGGACTCAGCTGAGTTCATTTTGTCAAAGCAGAAGATATCTTCGTGGGTTTACTTCACTGCAATTCTGGGTTCGGTTCTTTTTATACTCAATGTGGCTTGGATCGATAATTCCACCGGGTTTGGGAAGCCCTTCGTCGATGCGGTCTCGGAGCTTTCTGATAGCAAAGAGGTTGTGATGTTGATCCTAATTCTAATATTTGCCATTTTCCATAGTGGCTTGGCTAGTCTACGAGACACTGGTGAGCAACTTATTGGAGAACGTGCTTACCGTGTTTTGTTTGCGGGGACATCTTTACCGCTGGCTGTTAGTACTGTTGTGTATTTTATCAATCATAGATACGATGGAGTACAGTTATGGGAGCTCAAGAATGCATTTGGCATCCATGAATTTGTATGGCTCTCTAATTTTATCTCGTTCTTGTTCCTCTATCCCTCCACTTTCAATCTACTAGAGGTAGCAGCAGTTGACAAGCCCAAAATGCATCTTTGGGAAACTGGGATTATGAGAATCACCAGGCATCCACAGCTGGTCGGGCAGGTGATCTGGTGCCTGGCTCACACGATTTGGATAGGGAACTCAGTGGCAGTGGCAGCTTCTGTTGGTCTAATCGGGCACCACCTATTTGGTGCTTGGAATGGTGACAGGAGATTGGCGGTGCGACATGGCGAGGCCTTTGAAGTTGTGAAGAAGCGAACAAGTATCATACCATTCGCAGCCATTCTTGATGGCCGGCAAAAGTTGCCGAAAGATTACTACAAGGAATTTATTCGGTTGCCATATCTCTCTATCACTGTATTGACCTTAGGTGCGTACTTTGCGCACCCCCTTATGCAGGCAGCCAGTTTTCGGCTCCATTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0016119 GO:0016120 GO:0016853 GO:0016859 GO:0042214 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046246 GO:0071704 GO:0090471 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

NnrU

Protein Analysis

387

Amino Acids

43.24

Weight (kDa)

9.35

Isoelectric Point (pI)

34.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010250)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10830 AT1G10830 AT1G10830
fragaria_vesca	FvH4_4g12260 FvH4_4g12260 FvH4_4g12260
malus_domestica	MD04G1028100.v1.1
prunus_persica	Prupe.1G177500_v2.0.a1
pyrus_communis	pycom04g02470
rosa_chinensis	RchiOBHm_Chr4g0410061
rosa_laevigata	RLG00000008505
rosa_multiflora	Rmu_co8413299.1_g000001 Rmu_sc0000365.1_g000059 Rmu_sc0002691.1_g000001
rosa_roxburghii	Rroxscaffold_5G00354590
rosa_rugosa	Rorug04G0100800
rosa_samantha	Rh4AG159100 Rh4BG158400 Rh4CG170400 Rh4DG154200
rosa_wichuraiana	Rw4G013180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	826
Acc16I	TGCGCA	1 cut(s)	1119
Acc36I	ACCTGC	1 cut(s)	826
AccB1I	GGYRCC	2 cut(s)	846, 912
AccI	GTMKAC	1 cut(s)	526
AciI	CCGC	5 cut(s)	208, 440, 581, 596, 953
AclWI	GGATC	2 cut(s)	407, 475
AcoI	YGGCCR	1 cut(s)	1027
AcsI	RAATTY	3 cut(s)	195, 686, 1061
AfaI	GTAC	3 cut(s)	610, 648, 1112
AfiI	CCNNNNNNNGG	4 cut(s)	293, 420, 1132, 1146
AgsI	TTSAA	3 cut(s)	141, 742, 977
AjnI	CCWGG	2 cut(s)	812, 849
AleI	CACNNNNGTG	1 cut(s)	23
AluBI	AGCT	5 cut(s)	308, 451, 661, 826, 893
AluI	AGCT	5 cut(s)	308, 451, 661, 826, 893
Alw21I	GWGCWC	2 cut(s)	30, 663
Alw26I	GTCTC	3 cut(s)	103, 448, 525
AlwI	GGATC	2 cut(s)	407, 475
AlwNI	CAGNNNCTG	1 cut(s)	896
AoxI	GGCC	3 cut(s)	3, 969, 1027
ApeKI	GCWGC	4 cut(s)	758, 890, 1013, 1136
ApoI	RAATTY	3 cut(s)	195, 686, 1061
Asp700I	GAANNNNTTC	2 cut(s)	428, 1065
AspLEI	GCGC	1 cut(s)	1120
AsuC2I	CCSGG	1 cut(s)	415
AsuHPI	GGTGA	8 cut(s)	47, 118, 220, 275, 551, 802, 850, 950
AxyI	CCTNAGG	1 cut(s)	1102
BaeGI	GKGCMC	1 cut(s)	915
BanI	GGYRCC	2 cut(s)	846, 912
BanII	GRGCYC	2 cut(s)	89, 663
Bbv12I	GWGCWC	2 cut(s)	30, 663
BbvI	GCAGC	4 cut(s)	770, 902, 1025, 1148
BccI	CCATC	7 cut(s)	57, 233, 245, 260, 266, 635, 1019
BciT130I	CCWGG	2 cut(s)	814, 851
BcnI	CCSGG	1 cut(s)	415
BcoDI	GTCTC	3 cut(s)	103, 448, 525
BfaI	CTAG	2 cut(s)	522, 749
BfuAI	ACCTGC	1 cut(s)	826
BisI	GCNGC	4 cut(s)	759, 891, 1014, 1137
BlsI	GCNGC	4 cut(s)	760, 892, 1015, 1138
BmcAI	AGTACT	1 cut(s)	610
Bme1390I	CCNGG	3 cut(s)	415, 814, 851
BmiI	GGNNCC	3 cut(s)	848, 914, 1151
BmrFI	CCNGG	3 cut(s)	415, 814, 851
BmrI	ACTGGG	1 cut(s)	804
BmsI	GCATC	4 cut(s)	427, 687, 790, 826
BmuI	ACTGGG	1 cut(s)	804
BpuEI	CTTGAG	1 cut(s)	647
BpuMI	CCSGG	1 cut(s)	415
Bsa29I	ATCGAT	1 cut(s)	402
BsaBI	GATNNNNATC	1 cut(s)	479
BsaI	GGTCTC	2 cut(s)	103, 448
Bsc4I	CCNNNNNNNGG	4 cut(s)	293, 420, 1132, 1146
Bse118I	RCCGGY	1 cut(s)	1029
Bse1I	ACTGG	4 cut(s)	287, 541, 799, 1140
Bse21I	CCTNAGG	1 cut(s)	1102
Bse8I	GATNNNNATC	1 cut(s)	479
BseBI	CCWGG	2 cut(s)	814, 851
BseCI	ATCGAT	1 cut(s)	402
BseGI	GGATG	4 cut(s)	49, 119, 678, 817
BseJI	GATNNNNATC	1 cut(s)	479
BseLI	CCNNNNNNNGG	4 cut(s)	293, 420, 1132, 1146
BseMII	CTCAG	3 cut(s)	300, 318, 891
BseNI	ACTGG	4 cut(s)	287, 541, 799, 1140
BseRI	GAGGAG	1 cut(s)	4
BseSI	GKGCMC	1 cut(s)	915
BseXI	GCAGC	4 cut(s)	770, 902, 1025, 1148
BshFI	GGCC	3 cut(s)	5, 971, 1029
BshNI	GGYRCC	2 cut(s)	846, 912
BshVI	ATCGAT	1 cut(s)	402
BsiHKAI	GWGCWC	2 cut(s)	30, 663
BsiSI	CCGG	2 cut(s)	414, 1030
BslFI	GGGAC	2 cut(s)	190, 598
BslI	CCNNNNNNNGG	4 cut(s)	293, 420, 1132, 1146
BsmAI	GTCTC	3 cut(s)	103, 448, 525
BsmFI	GGGAC	2 cut(s)	190, 598
BsmI	GAATGC	1 cut(s)	673
BsnI	GGCC	3 cut(s)	5, 971, 1029
Bso31I	GGTCTC	2 cut(s)	103, 448
Bsp1286I	GDGCHC	4 cut(s)	30, 89, 663, 915
Bsp143I	GATC	3 cut(s)	399, 480, 840
BspACI	CCGC	5 cut(s)	208, 440, 581, 596, 953
BspANI	GGCC	3 cut(s)	5, 971, 1029
BspCNI	CTCAG	3 cut(s)	301, 317, 890
BspDI	ATCGAT	1 cut(s)	402
BspLI	GGNNCC	3 cut(s)	848, 914, 1151
BspMI	ACCTGC	1 cut(s)	826
BspPI	GGATC	2 cut(s)	407, 475
BspT107I	GGYRCC	2 cut(s)	846, 912
BspTNI	GGTCTC	2 cut(s)	103, 448
BsrFI	RCCGGY	1 cut(s)	1029
BsrI	ACTGG	4 cut(s)	287, 541, 799, 1140
BssAI	RCCGGY	1 cut(s)	1029
BssMI	GATC	3 cut(s)	399, 480, 840
Bst2UI	CCWGG	2 cut(s)	814, 851
Bst4CI	ACNGT	5 cut(s)	232, 569, 613, 651, 1093
Bst6I	CTCTTC	1 cut(s)	13
BstAPI	GCANNNNNTGC	1 cut(s)	1039
BstC8I	GCNNGC	3 cut(s)	600, 1031, 1134
BstDEI	CTNAG	4 cut(s)	304, 309, 877, 1102
BstENI	CCTNNNNNAGG	1 cut(s)	1130
BstF5I	GGATG	4 cut(s)	49, 119, 678, 817
BstHHI	GCGC	1 cut(s)	1120
BstKTI	GATC	3 cut(s)	402, 483, 843
BstMAI	GTCTC	3 cut(s)	103, 448, 525
BstMBI	GATC	3 cut(s)	399, 480, 840
BstMWI	GCNNNNNNNGC	6 cut(s)	778, 823, 832, 890, 1039, 1115
BstNI	CCWGG	2 cut(s)	814, 851
BstSCI	CCNGG	3 cut(s)	413, 812, 849
BstSLI	GKGCMC	1 cut(s)	915
BstV1I	GCAGC	4 cut(s)	770, 902, 1025, 1148
BstXI	CCANNNNNNTGG	1 cut(s)	923
Bsu15I	ATCGAT	1 cut(s)	402
Bsu36I	CCTNAGG	1 cut(s)	1102
BsuRI	GGCC	3 cut(s)	5, 971, 1029
BsuTUI	ATCGAT	1 cut(s)	402
BtgZI	GCGATG	1 cut(s)	285
BtsCI	GGATG	4 cut(s)	49, 119, 678, 817
BtsI	GCAGTG	2 cut(s)	354, 891
BtsIMutI	CAGTG	6 cut(s)	294, 354, 534, 885, 891, 1089
BveI	ACCTGC	1 cut(s)	826
Cac8I	GCNNGC	3 cut(s)	600, 1031, 1134
CaiI	CAGNNNCTG	1 cut(s)	896
CfoI	GCGC	1 cut(s)	1120
Cfr10I	RCCGGY	1 cut(s)	1029
ClaI	ATCGAT	1 cut(s)	402
Csp6I	GTAC	3 cut(s)	609, 647, 1111
CspCI	CAANNNNNGTGG	2 cut(s)	400, 435
CviAII	CATG	2 cut(s)	683, 962
CviQI	GTAC	3 cut(s)	609, 647, 1111
DdeI	CTNAG	4 cut(s)	304, 309, 877, 1102
DpnI	GATC	3 cut(s)	401, 482, 842
DpnII	GATC	3 cut(s)	399, 480, 840
EaeI	YGGCCR	1 cut(s)	1027
Eam1104I	CTCTTC	1 cut(s)	13
EarI	CTCTTC	1 cut(s)	13
Ecl136II	GAGCTC	1 cut(s)	661
Eco147I	AGGCCT	1 cut(s)	971
Eco24I	GRGCYC	2 cut(s)	89, 663
Eco31I	GGTCTC	2 cut(s)	103, 448
Eco32I	GATATC	1 cut(s)	336
Eco53kI	GAGCTC	1 cut(s)	661
Eco81I	CCTNAGG	1 cut(s)	1102
EcoICRI	GAGCTC	1 cut(s)	661
EcoNI	CCTNNNNNAGG	1 cut(s)	1130
EcoRII	CCWGG	2 cut(s)	812, 849
EcoRV	GATATC	1 cut(s)	336
EcoT22I	ATGCAT	2 cut(s)	673, 783
EcoT38I	GRGCYC	2 cut(s)	89, 663
FaeI	CATG	2 cut(s)	686, 965
FalI	AAGNNNNNCTT	4 cut(s)	74, 106, 98, 130
FaqI	GGGAC	2 cut(s)	190, 598
FatI	CATG	2 cut(s)	682, 961
FauI	CCCGC	2 cut(s)	215, 574
FblI	GTMKAC	1 cut(s)	526
Fnu4HI	GCNGC	4 cut(s)	759, 891, 1014, 1137
FokI	GGATG	4 cut(s)	36, 106, 665, 804
FriOI	GRGCYC	2 cut(s)	89, 663
Fsp4HI	GCNGC	4 cut(s)	759, 891, 1014, 1137
FspBI	CTAG	2 cut(s)	522, 749
FspI	TGCGCA	1 cut(s)	1119
GlaI	GCGC	1 cut(s)	1119
GluI	GCNGC	4 cut(s)	759, 891, 1014, 1137
HaeIII	GGCC	3 cut(s)	5, 971, 1029
HapII	CCGG	2 cut(s)	414, 1030
HhaI	GCGC	1 cut(s)	1120
Hin1II	CATG	2 cut(s)	686, 965
Hin6I	GCGC	1 cut(s)	1118
HinP1I	GCGC	1 cut(s)	1118
HincII	GTYRAC	1 cut(s)	766
HindII	GTYRAC	1 cut(s)	766
HinfI	GANTC	2 cut(s)	302, 807
HpaII	CCGG	2 cut(s)	414, 1030
HphI	GGTGA	8 cut(s)	47, 118, 220, 275, 551, 802, 850, 950
Hpy166II	GTNNAC	3 cut(s)	349, 527, 766
Hpy188I	TCNGA	2 cut(s)	448, 457
Hpy188III	TCNNGA	2 cut(s)	664, 1022
Hpy8I	GTNNAC	3 cut(s)	349, 527, 766
Hpy99I	CGWCG	1 cut(s)	437
HpyAV	CCTTC	3 cut(s)	100, 124, 439
HpyCH4III	ACNGT	5 cut(s)	232, 569, 613, 651, 1093
HpyCH4IV	ACGT	1 cut(s)	559
HpyCH4V	TGCA	4 cut(s)	359, 671, 781, 1132
HpyF10VI	GCNNNNNNNGC	6 cut(s)	778, 823, 832, 890, 1039, 1115
HpyF3I	CTNAG	4 cut(s)	304, 309, 877, 1102
HpySE526I	ACGT	1 cut(s)	559
Hsp92II	CATG	2 cut(s)	686, 965
HspAI	GCGC	1 cut(s)	1118
KroI	GCCGGC	1 cut(s)	1029
KroNI	GCCGGC	1 cut(s)	1031
Kzo9I	GATC	3 cut(s)	399, 480, 840
LmnI	GCTCC	3 cut(s)	448, 658, 1155
Lsp1109I	GCAGC	4 cut(s)	770, 902, 1025, 1148
LweI	GCATC	4 cut(s)	427, 687, 790, 826
MaeI	CTAG	2 cut(s)	522, 749
MaeII	ACGT	1 cut(s)	559
MaeIII	GTNAC	1 cut(s)	938
MalI	GATC	3 cut(s)	401, 482, 842
MboI	GATC	3 cut(s)	399, 480, 840
MboII	GAAGA	3 cut(s)	330, 343, 997
MhlI	GDGCHC	4 cut(s)	30, 89, 663, 915
MluCI	AATT	8 cut(s)	195, 212, 360, 406, 486, 686, 703, 1061
MlyI	GAGTC	1 cut(s)	296
Mph1103I	ATGCAT	2 cut(s)	673, 783
MroNI	GCCGGC	1 cut(s)	1029
MroXI	GAANNNNTTC	2 cut(s)	428, 1065
MslI	CAYNNNNRTG	1 cut(s)	23
MspA1I	CMGCKG	3 cut(s)	308, 598, 826
MspI	CCGG	2 cut(s)	414, 1030
MspR9I	CCNGG	3 cut(s)	415, 814, 851
Mva1269I	GAATGC	1 cut(s)	673
MvaI	CCWGG	2 cut(s)	814, 851
MwoI	GCNNNNNNNGC	6 cut(s)	778, 823, 832, 890, 1039, 1115
NaeI	GCCGGC	1 cut(s)	1031
NciI	CCSGG	1 cut(s)	415
NdeII	GATC	3 cut(s)	399, 480, 840
NgoMIV	GCCGGC	1 cut(s)	1029
NlaIII	CATG	2 cut(s)	686, 965
NlaIV	GGNNCC	3 cut(s)	848, 914, 1151
NmuCI	GTSAC	1 cut(s)	938
NsbI	TGCGCA	1 cut(s)	1119
NsiI	ATGCAT	2 cut(s)	673, 783
OliI	CACNNNNGTG	1 cut(s)	23
PaqCI	CACCTGC	1 cut(s)	826
PceI	AGGCCT	1 cut(s)	971
PcsI	WCGNNNNNNNCGW	1 cut(s)	565
PctI	GAATGC	1 cut(s)	673
PdiI	GCCGGC	1 cut(s)	1031
PdmI	GAANNNNTTC	2 cut(s)	428, 1065
PfeI	GAWTC	1 cut(s)	807
PkrI	GCNGC	4 cut(s)	760, 892, 1015, 1138
PleI	GAGTC	1 cut(s)	296
PpsI	GAGTC	1 cut(s)	296
Psp124BI	GAGCTC	1 cut(s)	663
Psp6I	CCWGG	2 cut(s)	812, 849
PspGI	CCWGG	2 cut(s)	812, 849
PspN4I	GGNNCC	3 cut(s)	848, 914, 1151
PstNI	CAGNNNCTG	1 cut(s)	896
PvuII	CAGCTG	2 cut(s)	308, 826
RsaI	GTAC	3 cut(s)	610, 648, 1112
RsaNI	GTAC	3 cut(s)	609, 647, 1111
RseI	CAYNNNNRTG	1 cut(s)	23
SacI	GAGCTC	1 cut(s)	663
SatI	GCNGC	4 cut(s)	759, 891, 1014, 1137
Sau3AI	GATC	3 cut(s)	399, 480, 840
ScaI	AGTACT	1 cut(s)	610
SchI	GAGTC	1 cut(s)	296
ScrFI	CCNGG	3 cut(s)	415, 814, 851
SduI	GDGCHC	4 cut(s)	30, 89, 663, 915
SfaNI	GCATC	4 cut(s)	427, 687, 790, 826
SmiMI	CAYNNNNRTG	1 cut(s)	23
SmlI	CTYRAG	1 cut(s)	662
SmoI	CTYRAG	1 cut(s)	662
Sse9I	AATT	8 cut(s)	195, 212, 360, 406, 486, 686, 703, 1061
SseBI	AGGCCT	1 cut(s)	971
SsiI	CCGC	5 cut(s)	208, 440, 581, 596, 953
SspI	AATATT	1 cut(s)	495
SspMI	CTAG	2 cut(s)	522, 749
SstI	GAGCTC	1 cut(s)	663
StuI	AGGCCT	1 cut(s)	971
StyD4I	CCNGG	3 cut(s)	413, 812, 849
TaaI	ACNGT	5 cut(s)	232, 569, 613, 651, 1093
TaiI	ACGT	1 cut(s)	562
TaqI	TCGA	3 cut(s)	199, 402, 435
TasI	AATT	8 cut(s)	195, 212, 360, 406, 486, 686, 703, 1061
TatI	WGTACW	2 cut(s)	608, 646
TfiI	GAWTC	1 cut(s)	807
TscAI	CASTG	6 cut(s)	294, 361, 541, 885, 891, 1096
TseFI	GTSAC	1 cut(s)	938
TseI	GCWGC	4 cut(s)	758, 890, 1013, 1136
Tsp45I	GTSAC	1 cut(s)	938
TspDTI	ATGAA	2 cut(s)	304, 699
TspRI	CASTG	6 cut(s)	294, 361, 541, 885, 891, 1096
XagI	CCTNNNNNAGG	1 cut(s)	1130
XapI	RAATTY	3 cut(s)	195, 686, 1061
XmiI	GTMKAC	1 cut(s)	526
XmnI	GAANNNNTTC	2 cut(s)	428, 1065
XspI	CTAG	2 cut(s)	522, 749
ZrmI	AGTACT	1 cut(s)	610
Zsp2I	ATGCAT	2 cut(s)	673, 783

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.