Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0010250

Physical Location & Seq

Genomic Coordinates Reverse (-)

40390677 .. 40393461

Gene Structure 2785 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG159100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGCTTCCTCCTCCACCCTTGTCCTCTCCACCCTCTTCTCTTCTCTCCCTCTCCAAAAAACCCTAAACCCAAAAACCAAGAACCCCTTCTCTCTCACTTCCCACAAACTCCCTAGGCCTCCTTCGTCCCCCACCCTCAGTTGTTCAACGTTTCCGAAACCCAAAACCCATCACAATCAGATACAACTGTGCAGGAGATTTCGAGCCCGCACCACCATCAGAGATGTCGATAAGGACGAGGAGGAGGAGCAGGCAGTTGTGGGAGAAGACTCGGCTGAGTTTCTCTTGTCAAAGCAGAAGCTGTCTTCCTGGCTTTATTTCACTGCTATTCTCGGGACTGTGCTGTTTGTGCTCAACGTGGCTTGGATTGATAATTCCACCGGATTTGGGAAGCCTTTCATCGAAGCGGTTTCGGGACTTTCGGATAGCCATGAGGTTGTAATGTTGCTCCTGATTCTCATATTTGCCATAGTCCATAGTGGTTTGGCTAGCCTACGAGACGCTGGTGAGAAGCTTATTGGAGAACGTGCTTTCCGCGTTTTGTTTGCAGGGACATCTTTACCATTGGCTGTTAGTACTGTTGTATATTTCATTAACCACAGATATGACGGAGTACAGTTATGGCAGCTCAAGGATGTATATGGCGTACATGAATTGGTGTGGTTGTCTAATTTTATTTCCTTCCTCTTCCTTTATCCATCGACTTTCAATCTACTAGAGGTAGCAGCTGTTGACAAGCCCAAAATGCATCTTTGGGAAACTGGGATTATGAGAATCACCAGGCATCCACAGGTAACAAATTCGTTTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0016119 GO:0016120 GO:0016853 GO:0016859 GO:0042214 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046246 GO:0071704 GO:0090471 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

NnrU

Protein Analysis

270

Amino Acids

30.32

Weight (kDa)

8.83

Isoelectric Point (pI)

38.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NnrU	PF07298	147 - 266	5.6e-20	NnrU protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0010250)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10830 AT1G10830 AT1G10830
fragaria_vesca	FvH4_4g12260 FvH4_4g12260 FvH4_4g12260
malus_domestica	MD04G1028100.v1.1
prunus_persica	Prupe.1G177500_v2.0.a1
pyrus_communis	pycom04g02470
rosa_chinensis	RchiOBHm_Chr4g0410061
rosa_laevigata	RLG00000008505
rosa_multiflora	Rmu_co8413299.1_g000001 Rmu_sc0000365.1_g000059 Rmu_sc0002691.1_g000001
rosa_roxburghii	Rroxscaffold_5G00354590
rosa_rugosa	Rorug04G0100800
rosa_samantha	Rh4AG159100 Rh4BG158400 Rh4CG170400 Rh4DG154200
rosa_wichuraiana	Rw4G013180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	537
AciI	CCGC	3 cut(s)	208, 407, 535
AclI	AACGTT	1 cut(s)	149
AcsI	RAATTY	1 cut(s)	799
AfaI	GTAC	3 cut(s)	577, 615, 648
AfiI	CCNNNNNNNGG	1 cut(s)	387
AgsI	TTSAA	2 cut(s)	147, 709
AjnI	CCWGG	2 cut(s)	308, 779
AjuI	GAANNNNNNNTTGG	2 cut(s)	71, 103
AloI	GAACNNNNNNTCC	2 cut(s)	516, 548
AluBI	AGCT	4 cut(s)	301, 514, 628, 728
AluI	AGCT	4 cut(s)	301, 514, 628, 728
Alw21I	GWGCWC	1 cut(s)	354
Alw26I	GTCTC	1 cut(s)	492
AlwNI	CAGNNNCTG	1 cut(s)	301
Ama87I	CYCGRG	1 cut(s)	332
AoxI	GGCC	1 cut(s)	116
ApeKI	GCWGC	2 cut(s)	625, 725
ApoI	RAATTY	1 cut(s)	799
Asp700I	GAANNNNTTC	2 cut(s)	86, 395
AspA2I	CCTAGG	1 cut(s)	113
AsuHPI	GGTGA	2 cut(s)	518, 769
AsuNHI	GCTAGC	1 cut(s)	488
AvaI	CYCGRG	1 cut(s)	332
AvrII	CCTAGG	1 cut(s)	113
BaeI	ACNNNNGTAYC	2 cut(s)	173, 206
BanII	GRGCYC	1 cut(s)	208
BbsI	GAAGAC	2 cut(s)	273, 297
Bbv12I	GWGCWC	1 cut(s)	354
BbvI	GCAGC	2 cut(s)	637, 737
BccI	CCATC	3 cut(s)	177, 224, 706
BciT130I	CCWGG	2 cut(s)	310, 781
BcoDI	GTCTC	1 cut(s)	492
BfaI	CTAG	3 cut(s)	114, 489, 716
BisI	GCNGC	2 cut(s)	626, 726
BlnI	CCTAGG	1 cut(s)	113
BlsI	GCNGC	2 cut(s)	627, 727
BmcAI	AGTACT	1 cut(s)	577
Bme1390I	CCNGG	2 cut(s)	310, 781
BmeT110I	CYCGRG	1 cut(s)	332
BmrFI	CCNGG	2 cut(s)	310, 781
BmrI	ACTGGG	1 cut(s)	771
BmsI	GCATC	2 cut(s)	757, 793
BmtI	GCTAGC	1 cut(s)	492
BmuI	ACTGGG	1 cut(s)	771
BpiI	GAAGAC	2 cut(s)	273, 297
BpuEI	CTTGAG	1 cut(s)	614
BsaJI	CCNNGG	1 cut(s)	113
BsaWI	WCCGGW	1 cut(s)	380
Bsc4I	CCNNNNNNNGG	1 cut(s)	387
Bse1I	ACTGG	1 cut(s)	766
BseBI	CCWGG	2 cut(s)	310, 781
BseDI	CCNNGG	1 cut(s)	113
BseGI	GGATG	2 cut(s)	640, 784
BseLI	CCNNNNNNNGG	1 cut(s)	387
BseMII	CTCAG	2 cut(s)	151, 267
BseNI	ACTGG	1 cut(s)	766
BseRI	GAGGAG	3 cut(s)	254, 257, 260
BseXI	GCAGC	2 cut(s)	637, 737
BsgI	GTGCAG	1 cut(s)	211
Bsh1236I	CGCG	1 cut(s)	537
BshFI	GGCC	1 cut(s)	118
BsiHKAI	GWGCWC	1 cut(s)	354
BsiHKCI	CYCGRG	1 cut(s)	332
BsiSI	CCGG	1 cut(s)	381
BslFI	GGGAC	4 cut(s)	112, 349, 429, 565
BslI	CCNNNNNNNGG	1 cut(s)	387
BsmAI	GTCTC	1 cut(s)	492
BsmBI	CGTCTC	1 cut(s)	492
BsmFI	GGGAC	4 cut(s)	112, 349, 429, 565
BsnI	GGCC	1 cut(s)	118
BsoBI	CYCGRG	1 cut(s)	332
Bsp1286I	GDGCHC	2 cut(s)	208, 354
BspACI	CCGC	3 cut(s)	208, 407, 535
BspANI	GGCC	1 cut(s)	118
BspCNI	CTCAG	2 cut(s)	150, 268
BspFNI	CGCG	1 cut(s)	537
BspOI	GCTAGC	1 cut(s)	492
BsrI	ACTGG	1 cut(s)	766
BssECI	CCNNGG	1 cut(s)	113
BssT1I	CCWWGG	1 cut(s)	113
Bst2UI	CCWGG	2 cut(s)	310, 781
Bst4CI	ACNGT	4 cut(s)	189, 340, 580, 618
Bst6I	CTCTTC	3 cut(s)	41, 46, 692
BstC8I	GCNNGC	3 cut(s)	208, 252, 490
BstDEI	CTNAG	2 cut(s)	137, 276
BstF5I	GGATG	2 cut(s)	640, 784
BstFNI	CGCG	1 cut(s)	537
BstMAI	GTCTC	1 cut(s)	492
BstMWI	GCNNNNNNNGC	2 cut(s)	349, 745
BstNI	CCWGG	2 cut(s)	310, 781
BstSCI	CCNGG	2 cut(s)	308, 779
BstUI	CGCG	1 cut(s)	537
BstV1I	GCAGC	2 cut(s)	637, 737
BstV2I	GAAGAC	2 cut(s)	273, 297
BsuRI	GGCC	1 cut(s)	118
BtsCI	GGATG	2 cut(s)	640, 784
BtsI	GCAGTG	1 cut(s)	321
BtsIMutI	CAGTG	1 cut(s)	321
Cac8I	GCNNGC	3 cut(s)	208, 252, 490
CaiI	CAGNNNCTG	1 cut(s)	301
CseI	GACGC	1 cut(s)	509
Csp6I	GTAC	3 cut(s)	576, 614, 647
CspCI	CAANNNNNGTGG	2 cut(s)	367, 402
CviAII	CATG	2 cut(s)	431, 650
CviQI	GTAC	3 cut(s)	576, 614, 647
DdeI	CTNAG	2 cut(s)	137, 276
Eam1104I	CTCTTC	3 cut(s)	41, 46, 692
EarI	CTCTTC	3 cut(s)	41, 46, 692
Eco130I	CCWWGG	1 cut(s)	113
Eco147I	AGGCCT	1 cut(s)	118
Eco24I	GRGCYC	1 cut(s)	208
Eco88I	CYCGRG	1 cut(s)	332
EcoRII	CCWGG	2 cut(s)	308, 779
EcoT14I	CCWWGG	1 cut(s)	113
EcoT22I	ATGCAT	1 cut(s)	750
EcoT38I	GRGCYC	1 cut(s)	208
ErhI	CCWWGG	1 cut(s)	113
Esp3I	CGTCTC	1 cut(s)	492
FaeI	CATG	2 cut(s)	434, 653
FalI	AAGNNNNNCTT	2 cut(s)	71, 103
FaqI	GGGAC	4 cut(s)	112, 349, 429, 565
FatI	CATG	2 cut(s)	430, 649
FauI	CCCGC	1 cut(s)	215
Fnu4HI	GCNGC	2 cut(s)	626, 726
FokI	GGATG	2 cut(s)	647, 771
FriOI	GRGCYC	1 cut(s)	208
Fsp4HI	GCNGC	2 cut(s)	626, 726
FspBI	CTAG	3 cut(s)	114, 489, 716
GluI	GCNGC	2 cut(s)	626, 726
HaeIII	GGCC	1 cut(s)	118
HapII	CCGG	1 cut(s)	381
HgaI	GACGC	1 cut(s)	509
Hin1II	CATG	2 cut(s)	434, 653
HincII	GTYRAC	1 cut(s)	733
HindII	GTYRAC	1 cut(s)	733
HindIII	AAGCTT	1 cut(s)	512
HinfI	GANTC	3 cut(s)	269, 454, 774
HpaII	CCGG	1 cut(s)	381
HphI	GGTGA	2 cut(s)	518, 769
Hpy166II	GTNNAC	1 cut(s)	733
Hpy188I	TCNGA	4 cut(s)	156, 180, 221, 424
Hpy188III	TCNNGA	3 cut(s)	334, 414, 451
Hpy8I	GTNNAC	1 cut(s)	733
HpyAV	CCTTC	3 cut(s)	97, 132, 691
HpyCH4III	ACNGT	4 cut(s)	189, 340, 580, 618
HpyCH4IV	ACGT	3 cut(s)	149, 357, 526
HpyCH4V	TGCA	3 cut(s)	192, 548, 748
HpyF10VI	GCNNNNNNNGC	2 cut(s)	349, 745
HpyF3I	CTNAG	2 cut(s)	137, 276
HpySE526I	ACGT	3 cut(s)	149, 357, 526
Hsp92II	CATG	2 cut(s)	434, 653
LmnI	GCTCC	2 cut(s)	247, 453
Lsp1109I	GCAGC	2 cut(s)	637, 737
LweI	GCATC	2 cut(s)	757, 793
MaeI	CTAG	3 cut(s)	114, 489, 716
MaeII	ACGT	3 cut(s)	149, 357, 526
MaeIII	GTNAC	1 cut(s)	793
MboII	GAAGA	5 cut(s)	28, 33, 278, 297, 679
MhlI	GDGCHC	2 cut(s)	208, 354
MluCI	AATT	4 cut(s)	373, 653, 670, 799
MlyI	GAGTC	1 cut(s)	263
Mph1103I	ATGCAT	1 cut(s)	750
MroXI	GAANNNNTTC	2 cut(s)	86, 395
MseI	TTAA	2 cut(s)	594, 811
MslI	CAYNNNNRTG	1 cut(s)	603
MspA1I	CMGCKG	1 cut(s)	728
MspI	CCGG	1 cut(s)	381
MspR9I	CCNGG	2 cut(s)	310, 781
MvaI	CCWGG	2 cut(s)	310, 781
MvnI	CGCG	1 cut(s)	537
MwoI	GCNNNNNNNGC	2 cut(s)	349, 745
NheI	GCTAGC	1 cut(s)	488
NlaIII	CATG	2 cut(s)	434, 653
NmeAIII	GCCGAG	1 cut(s)	251
NsiI	ATGCAT	1 cut(s)	750
PceI	AGGCCT	1 cut(s)	118
PcsI	WCGNNNNNNNCGW	1 cut(s)	234
PdmI	GAANNNNTTC	2 cut(s)	86, 395
PfeI	GAWTC	2 cut(s)	454, 774
PkrI	GCNGC	2 cut(s)	627, 727
PleI	GAGTC	1 cut(s)	263
PpsI	GAGTC	1 cut(s)	263
Psp1406I	AACGTT	1 cut(s)	149
Psp6I	CCWGG	2 cut(s)	308, 779
PspGI	CCWGG	2 cut(s)	308, 779
PstNI	CAGNNNCTG	1 cut(s)	301
PvuII	CAGCTG	1 cut(s)	728
RsaI	GTAC	3 cut(s)	577, 615, 648
RsaNI	GTAC	3 cut(s)	576, 614, 647
RseI	CAYNNNNRTG	1 cut(s)	603
SaqAI	TTAA	2 cut(s)	594, 811
SatI	GCNGC	2 cut(s)	626, 726
ScaI	AGTACT	1 cut(s)	577
SchI	GAGTC	1 cut(s)	263
ScrFI	CCNGG	2 cut(s)	310, 781
SduI	GDGCHC	2 cut(s)	208, 354
SfaNI	GCATC	2 cut(s)	757, 793
SmiMI	CAYNNNNRTG	1 cut(s)	603
SmlI	CTYRAG	1 cut(s)	629
SmoI	CTYRAG	1 cut(s)	629
Sse9I	AATT	4 cut(s)	373, 653, 670, 799
SseBI	AGGCCT	1 cut(s)	118
SsiI	CCGC	3 cut(s)	208, 407, 535
SspMI	CTAG	3 cut(s)	114, 489, 716
StuI	AGGCCT	1 cut(s)	118
StyD4I	CCNGG	2 cut(s)	308, 779
StyI	CCWWGG	1 cut(s)	113
TaaI	ACNGT	4 cut(s)	189, 340, 580, 618
TaiI	ACGT	3 cut(s)	152, 360, 529
TaqI	TCGA	4 cut(s)	202, 228, 402, 701
TasI	AATT	4 cut(s)	373, 653, 670, 799
TatI	WGTACW	2 cut(s)	575, 613
TfiI	GAWTC	2 cut(s)	454, 774
Tru1I	TTAA	2 cut(s)	594, 811
Tru9I	TTAA	2 cut(s)	594, 811
TscAI	CASTG	1 cut(s)	328
TseI	GCWGC	2 cut(s)	625, 725
TspDTI	ATGAA	3 cut(s)	388, 580, 666
TspGWI	ACGGA	1 cut(s)	624
TspRI	CASTG	1 cut(s)	328
XapI	RAATTY	1 cut(s)	799
XmaJI	CCTAGG	1 cut(s)	113
XmnI	GAANNNNTTC	2 cut(s)	86, 395
XspI	CTAG	3 cut(s)	114, 489, 716
ZrmI	AGTACT	1 cut(s)	577
Zsp2I	ATGCAT	1 cut(s)	750

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.