Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8413299.1

Orthogroup ID

OG0010250

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1349

Gene Structure 1349 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8413299.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

gttgtaatgttgctcctgattctcatatttgccatagtccatagtggtttggctagcctacgagacgctggtgagaagcttattggagaacgtgctttccgcgttttgtttgcagggacatctttaccattggctgttagtactgttgtatatttcattaaccacagatatgatggagtacagttatggcagctcaaggatgtatatggtgtacatgaatttgtgtggttgtctaattttatttccttcctcttcctttatccatcgactttcaatctactagaggtagcagctgttgacaagcccaaaatgcatctttgggaaactgggattatgagaatcacgaggcatccacagcttgtagggcaggtggtttggtgcttggctcacacaatttggatcggaaactcggtaacagtggcagcttctattggtttaattgggcaccacctatttggtgcttggaatggtgacaggagattagctataagatatggggaaaactttgaagttgtgaagaagcgaacaagtattataccttttgcagccattattgatggccgtcaaaagttgccaaaagattactacaaggaatttattcggttgccttattttgtgatcactgcattgacgttaggtgcatactttgcacacccccttatgcaggcagccagttttgggctccattggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0016119 GO:0016120 GO:0016853 GO:0016859 GO:0042214 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046246 GO:0071704 GO:0090471 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

NnrU

Protein Analysis

230

Amino Acids

26.11

Weight (kDa)

9.49

Isoelectric Point (pI)

18.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010250)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10830 AT1G10830 AT1G10830
fragaria_vesca	FvH4_4g12260 FvH4_4g12260 FvH4_4g12260
malus_domestica	MD04G1028100.v1.1
prunus_persica	Prupe.1G177500_v2.0.a1
pyrus_communis	pycom04g02470
rosa_chinensis	RchiOBHm_Chr4g0410061
rosa_laevigata	RLG00000008505
rosa_multiflora	Rmu_co8413299.1_g000001 Rmu_sc0000365.1_g000059 Rmu_sc0002691.1_g000001
rosa_roxburghii	Rroxscaffold_5G00354590
rosa_rugosa	Rorug04G0100800
rosa_samantha	Rh4AG159100 Rh4BG158400 Rh4CG170400 Rh4DG154200
rosa_wichuraiana	Rw4G013180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	358
Acc36I	ACCTGC	1 cut(s)	358
AccB1I	GGYRCC	1 cut(s)	444
AccII	CGCG	1 cut(s)	102
AciI	CCGC	1 cut(s)	100
AclWI	GGATC	1 cut(s)	407
AcoI	YGGCCR	1 cut(s)	559
AcsI	RAATTY	2 cut(s)	218, 593
AfaI	GTAC	3 cut(s)	142, 180, 213
AfiI	CCNNNNNNNGG	2 cut(s)	664, 678
AgsI	TTSAA	2 cut(s)	274, 509
AloI	GAACNNNNNNTCC	2 cut(s)	81, 113
AluBI	AGCT	6 cut(s)	79, 193, 293, 358, 425, 485
AluI	AGCT	6 cut(s)	79, 193, 293, 358, 425, 485
Alw26I	GTCTC	1 cut(s)	57
AlwI	GGATC	1 cut(s)	407
AoxI	GGCC	1 cut(s)	559
ApeKI	GCWGC	5 cut(s)	190, 290, 422, 545, 668
ApoI	RAATTY	2 cut(s)	218, 593
Asp700I	GAANNNNTTC	1 cut(s)	597
AsuHPI	GGTGA	2 cut(s)	83, 482
AsuNHI	GCTAGC	1 cut(s)	53
BaeGI	GKGCMC	1 cut(s)	447
BanI	GGYRCC	1 cut(s)	444
BanII	GRGCYC	1 cut(s)	684
BauI	CACGAG	1 cut(s)	343
BbvI	GCAGC	5 cut(s)	202, 302, 434, 557, 680
BccI	CCATC	3 cut(s)	167, 271, 551
BceAI	ACGGC	1 cut(s)	546
BclI	TGATCA	1 cut(s)	618
BcoDI	GTCTC	1 cut(s)	57
BfaI	CTAG	2 cut(s)	54, 281
BfuAI	ACCTGC	1 cut(s)	358
BisI	GCNGC	5 cut(s)	191, 291, 423, 546, 669
BlsI	GCNGC	5 cut(s)	192, 292, 424, 547, 670
BmcAI	AGTACT	1 cut(s)	142
BmiI	GGNNCC	2 cut(s)	446, 683
BmrI	ACTGGG	1 cut(s)	336
BmsI	GCATC	2 cut(s)	322, 358
BmtI	GCTAGC	1 cut(s)	57
BmuI	ACTGGG	1 cut(s)	336
BpuEI	CTTGAG	1 cut(s)	179
Bsc4I	CCNNNNNNNGG	2 cut(s)	664, 678
Bse1I	ACTGG	2 cut(s)	331, 672
BseGI	GGATG	2 cut(s)	205, 349
BseLI	CCNNNNNNNGG	2 cut(s)	664, 678
BseNI	ACTGG	2 cut(s)	331, 672
BseSI	GKGCMC	1 cut(s)	447
BseXI	GCAGC	5 cut(s)	202, 302, 434, 557, 680
Bsh1236I	CGCG	1 cut(s)	102
BshFI	GGCC	1 cut(s)	561
BshNI	GGYRCC	1 cut(s)	444
BslFI	GGGAC	1 cut(s)	130
BslI	CCNNNNNNNGG	2 cut(s)	664, 678
BsmAI	GTCTC	1 cut(s)	57
BsmBI	CGTCTC	1 cut(s)	57
BsmFI	GGGAC	1 cut(s)	130
BsnI	GGCC	1 cut(s)	561
Bsp1286I	GDGCHC	2 cut(s)	447, 684
Bsp1407I	TGTACA	1 cut(s)	211
Bsp143I	GATC	2 cut(s)	399, 618
BspACI	CCGC	1 cut(s)	100
BspANI	GGCC	1 cut(s)	561
BspFNI	CGCG	1 cut(s)	102
BspLI	GGNNCC	2 cut(s)	446, 683
BspMI	ACCTGC	1 cut(s)	358
BspOI	GCTAGC	1 cut(s)	57
BspPI	GGATC	1 cut(s)	407
BspT107I	GGYRCC	1 cut(s)	444
BsrGI	TGTACA	1 cut(s)	211
BsrI	ACTGG	2 cut(s)	331, 672
BssMI	GATC	2 cut(s)	399, 618
BssSI	CACGAG	1 cut(s)	343
Bst2BI	CACGAG	1 cut(s)	343
Bst4CI	ACNGT	3 cut(s)	145, 183, 418
Bst6I	CTCTTC	1 cut(s)	257
BstAPI	GCANNNNNTGC	1 cut(s)	647
BstAUI	TGTACA	1 cut(s)	211
BstC8I	GCNNGC	2 cut(s)	55, 666
BstENI	CCTNNNNNAGG	1 cut(s)	662
BstF5I	GGATG	2 cut(s)	205, 349
BstFNI	CGCG	1 cut(s)	102
BstKTI	GATC	2 cut(s)	402, 621
BstMAI	GTCTC	1 cut(s)	57
BstMBI	GATC	2 cut(s)	399, 618
BstMWI	GCNNNNNNNGC	4 cut(s)	310, 355, 364, 647
BstSLI	GKGCMC	1 cut(s)	447
BstUI	CGCG	1 cut(s)	102
BstV1I	GCAGC	5 cut(s)	202, 302, 434, 557, 680
BstXI	CCANNNNNNTGG	1 cut(s)	455
BsuRI	GGCC	1 cut(s)	561
BtsCI	GGATG	2 cut(s)	205, 349
BtsI	GCAGTG	1 cut(s)	621
BtsIMutI	CAGTG	2 cut(s)	423, 621
BveI	ACCTGC	1 cut(s)	358
Cac8I	GCNNGC	2 cut(s)	55, 666
CseI	GACGC	1 cut(s)	74
Csp6I	GTAC	3 cut(s)	141, 179, 212
CviAII	CATG	1 cut(s)	215
CviQI	GTAC	3 cut(s)	141, 179, 212
DpnI	GATC	2 cut(s)	401, 620
DpnII	GATC	2 cut(s)	399, 618
EaeI	YGGCCR	1 cut(s)	559
Eam1104I	CTCTTC	1 cut(s)	257
EarI	CTCTTC	1 cut(s)	257
Eco24I	GRGCYC	1 cut(s)	684
EcoNI	CCTNNNNNAGG	1 cut(s)	662
EcoT22I	ATGCAT	1 cut(s)	315
EcoT38I	GRGCYC	1 cut(s)	684
Esp3I	CGTCTC	1 cut(s)	57
FaeI	CATG	1 cut(s)	218
FaqI	GGGAC	1 cut(s)	130
FatI	CATG	1 cut(s)	214
FbaI	TGATCA	1 cut(s)	618
Fnu4HI	GCNGC	5 cut(s)	191, 291, 423, 546, 669
FokI	GGATG	2 cut(s)	212, 336
FriOI	GRGCYC	1 cut(s)	684
Fsp4HI	GCNGC	5 cut(s)	191, 291, 423, 546, 669
FspBI	CTAG	2 cut(s)	54, 281
GluI	GCNGC	5 cut(s)	191, 291, 423, 546, 669
HaeIII	GGCC	1 cut(s)	561
HgaI	GACGC	1 cut(s)	74
Hin1II	CATG	1 cut(s)	218
HincII	GTYRAC	1 cut(s)	298
HindII	GTYRAC	1 cut(s)	298
HindIII	AAGCTT	1 cut(s)	77
HinfI	GANTC	2 cut(s)	19, 339
HphI	GGTGA	2 cut(s)	83, 482
Hpy166II	GTNNAC	2 cut(s)	212, 298
Hpy188I	TCNGA	1 cut(s)	404
Hpy188III	TCNNGA	2 cut(s)	16, 343
Hpy8I	GTNNAC	2 cut(s)	212, 298
HpyAV	CCTTC	1 cut(s)	256
HpyCH4III	ACNGT	3 cut(s)	145, 183, 418
HpyCH4IV	ACGT	2 cut(s)	91, 632
HpyCH4V	TGCA	7 cut(s)	113, 313, 545, 626, 641, 650, 664
HpyF10VI	GCNNNNNNNGC	4 cut(s)	310, 355, 364, 647
HpySE526I	ACGT	2 cut(s)	91, 632
Hsp92II	CATG	1 cut(s)	218
Ksp22I	TGATCA	1 cut(s)	618
Kzo9I	GATC	2 cut(s)	399, 618
LmnI	GCTCC	2 cut(s)	18, 687
LpnPI	CCDG	8 cut(s)	29, 54, 99, 312, 353, 460, 650, 685
Lsp1109I	GCAGC	5 cut(s)	202, 302, 434, 557, 680
LweI	GCATC	2 cut(s)	322, 358
MaeI	CTAG	2 cut(s)	54, 281
MaeII	ACGT	2 cut(s)	91, 632
MaeIII	GTNAC	2 cut(s)	412, 470
MalI	GATC	2 cut(s)	401, 620
MboI	GATC	2 cut(s)	399, 618
MboII	GAAGA	2 cut(s)	244, 529
MhlI	GDGCHC	2 cut(s)	447, 684
MluCI	AATT	5 cut(s)	218, 235, 393, 438, 593
MnlI	CCTC	3 cut(s)	260, 277, 339
Mph1103I	ATGCAT	1 cut(s)	315
MroXI	GAANNNNTTC	1 cut(s)	597
MseI	TTAA	2 cut(s)	159, 437
MslI	CAYNNNNRTG	1 cut(s)	168
MspA1I	CMGCKG	1 cut(s)	293
MvnI	CGCG	1 cut(s)	102
MwoI	GCNNNNNNNGC	4 cut(s)	310, 355, 364, 647
NdeII	GATC	2 cut(s)	399, 618
NheI	GCTAGC	1 cut(s)	53
NlaIII	CATG	1 cut(s)	218
NlaIV	GGNNCC	2 cut(s)	446, 683
NmuCI	GTSAC	1 cut(s)	470
NsiI	ATGCAT	1 cut(s)	315
PaqCI	CACCTGC	1 cut(s)	358
PdmI	GAANNNNTTC	1 cut(s)	597
PfeI	GAWTC	2 cut(s)	19, 339
PkrI	GCNGC	5 cut(s)	192, 292, 424, 547, 670
PspN4I	GGNNCC	2 cut(s)	446, 683
PvuII	CAGCTG	1 cut(s)	293
RsaI	GTAC	3 cut(s)	142, 180, 213
RsaNI	GTAC	3 cut(s)	141, 179, 212
RseI	CAYNNNNRTG	1 cut(s)	168
SaqAI	TTAA	2 cut(s)	159, 437
SatI	GCNGC	5 cut(s)	191, 291, 423, 546, 669
Sau3AI	GATC	2 cut(s)	399, 618
ScaI	AGTACT	1 cut(s)	142
SduI	GDGCHC	2 cut(s)	447, 684
SfaNI	GCATC	2 cut(s)	322, 358
SmiMI	CAYNNNNRTG	1 cut(s)	168
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
Sse9I	AATT	5 cut(s)	218, 235, 393, 438, 593
SsiI	CCGC	1 cut(s)	100
SspMI	CTAG	2 cut(s)	54, 281
TaaI	ACNGT	3 cut(s)	145, 183, 418
TaiI	ACGT	2 cut(s)	94, 635
TaqI	TCGA	1 cut(s)	266
TasI	AATT	5 cut(s)	218, 235, 393, 438, 593
TatI	WGTACW	3 cut(s)	140, 178, 211
TfiI	GAWTC	2 cut(s)	19, 339
Tru1I	TTAA	2 cut(s)	159, 437
Tru9I	TTAA	2 cut(s)	159, 437
TscAI	CASTG	2 cut(s)	423, 628
TseFI	GTSAC	1 cut(s)	470
TseI	GCWGC	5 cut(s)	190, 290, 422, 545, 668
Tsp45I	GTSAC	1 cut(s)	470
TspDTI	ATGAA	2 cut(s)	145, 231
TspRI	CASTG	2 cut(s)	423, 628
XagI	CCTNNNNNAGG	1 cut(s)	662
XapI	RAATTY	2 cut(s)	218, 593
XcmI	CCANNNNNNNNNTGG	1 cut(s)	170
XmnI	GAANNNNTTC	1 cut(s)	597
XspI	CTAG	2 cut(s)	54, 281
ZrmI	AGTACT	1 cut(s)	142
Zsp2I	ATGCAT	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.