FvH4_4g12300

Amino acid transporter

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Reverse (-)
16010849 .. 16013466
2618 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g12300.t1

Sequence Viewer

Length: 1398 bp
ATGTTCAAGTGGTTTCGATCCAAGTGTCTTCCTCACCAAAACCAAGTTGCTAGTGAGTCGGTGCACGGCAGGAACTTGGCTCTGAAAGAGCTGAGCTGCAGTGTTTGCTTGGAGGAAAACAAAGTATGCAAATGCGAGGAAAGTTTTGAGAGCTGCAAGAAAGTCGACTCAGATGTTAGCGATGATGAGCAGCACCACGGAGAGGCCAATAATTCTGTTACTCATGCTGTGATCAACATGACTGGGATGCTCATAGGTTTGGGGCAGTTATCAACTCCATATGCCCTAGAATCTGGAGGGTGGGTTTCTGCATTCTTGATGATAGGACTTGGTGTTATATGTGCGTATTGTTCTCATCTACTAGGGAAATGCCTAGACAAACATCCCAAGTCAAGAAGCTACACTGATATTGGACAGAATGCTTTTGGAACCAAAGGAAAACTCCTAGCAGCAACCTTCATCTACTTGGAGATCTTCATGGCTCTTGTGTCCTACACCATTTCATTGCATGACAACATAAACAGGGTTTTCTCGGGCACCCAAGTTCAGATTCCATGGGCCAAGTTATCGAGATCTCAGCTCCTGACGTTGGCGGCGGTTCTCGTTGCTCTGCCGAGTCTGTGGTTGAGAGATCTCTCTTCCATATCATTCCTTTCCTTTGGTGGTGTTCTCATGTCACTTGCCATTTTTGCATCAGTGGCATGCACAGGGATTTTTGGAGGGGTGAAAGCTAATCATATTATACCAGTCCTTCAGATTCAAAACATTCCTGCAATATCTGGCCTTTATATCTTTAGCTATGCAGGACATATTGTCTTTCCTAATTTGTACAAGGCCATGAAAGATCCTTCTAAGTTCACCAAGGTATCTATAATAAGCTTCAGCTTAGTCACTTTGCTTTACAGCACTCTAGCCTTCATGGGTGCCAAGTTGTATGGTCCCCATGTAAATCCCCAAATCACTCTAAGCATGCCTCCCCATCTTATTGTTACAAAGATCGCACTTTGGGCCACAGTGCTCACACCAATGACCAAATATGCTCTGGAATTTGCACCAATGGCAATCCAGGTGGAACATAATCTCCCAGATTACATGAGTTCAAGAACAAAGTTGATTGTGAGAGGTACTGTTGGATCCTTTCTACTTCTTGTGATTCTGGCACTAGCTCTGTCAGTCCCATATTTTGAGTATGTTCTTAGTCTCACTGGATCCCTTGTGAGCATTGCAATTTGTGTCATTTTCCCTTGTGCCTTCTACCTCAAGATTTGTTGGTCTCAGATATCAAGGCCTCTTCTGGTCCTAAACTTCACCCTGATTGCATTTGGATTTGTTCTTGGATTGTTTGGAACCATTTCCTCTTCAAAGTTGCTCATGCAAAATCTGAGCAGAGCTCACTGA

Protein Analysis

466

Amino Acids

50.96

Weight (kDa)

8.93

Isoelectric Point (pI)

36.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 71 - 452 1.8e-64 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0014378)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G16740
fragaria_vesca FvH4_4g12300
malus_domestica MD04G1027800.v1.1 MD13G1279400.v1.1
prunus_persica Prupe.1G177200_v2.0.a1
pyrus_communis pycom04g02440 pycom13g29390
rosa_chinensis RchiOBHm_Chr4g0410371
rosa_laevigata RLG00000008434
rosa_multiflora Rmu_sc0002111.1_g000022
rosa_roxburghii Rroxscaffold_5G00355180
rosa_rugosa Rorug04G0102200
rosa_samantha Rh4AG160300 Rh4BG159300 Rh4CG172400 Rh4DG155200
rosa_wichuraiana Rw4G013360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 536, 923
AccI GTMKAC 1 cut(s) 165
AciI CCGC 2 cut(s) 593, 596
AclWI GGATC 6 cut(s) 12, 839, 1128, 1141, 1203, 1216
AcsI RAATTY 1 cut(s) 1046
AcuI CTGAAG 2 cut(s) 737, 865
AfaI GTAC 2 cut(s) 830, 1126
AfiI CCNNNNNNNGG 2 cut(s) 202, 589
AgsI TTSAA 4 cut(s) 7, 761, 1101, 1362
AhdI GACNNNNNGTC 1 cut(s) 812
AjnI CCWGG 1 cut(s) 1065
AjuI GAANNNNNNNTTGG 2 cut(s) 534, 566
AloI GAACNNNNNNTCC 2 cut(s) 1065, 1097
Alw21I GWGCWC 3 cut(s) 66, 1020, 1393
Alw26I GTCTC 2 cut(s) 1205, 1278
Alw44I GTGCAC 1 cut(s) 62
AlwI GGATC 6 cut(s) 12, 839, 1128, 1141, 1203, 1216
AlwNI CAGNNNCTG 1 cut(s) 583
Ama87I CYCGRG 1 cut(s) 532
AoxI GGCC 6 cut(s) 204, 558, 781, 834, 1008, 1286
ApaLI GTGCAC 1 cut(s) 62
ApeKI GCWGC 4 cut(s) 96, 153, 190, 449
ApoI RAATTY 1 cut(s) 1046
Asp700I GAANNNNTTC 1 cut(s) 1351
AspS9I GGNCC 4 cut(s) 558, 938, 1008, 1297
AsuHPI GGTGA 4 cut(s) 26, 736, 850, 1300
AvaI CYCGRG 1 cut(s) 532
AvaII GGWCC 2 cut(s) 938, 1297
BaeGI GKGCMC 2 cut(s) 66, 539
BaeI ACNNNNGTAYC 2 cut(s) 849, 882
BamHI GGATCC 2 cut(s) 1133, 1208
BanI GGYRCC 2 cut(s) 536, 923
BanII GRGCYC 1 cut(s) 1393
BbsI GAAGAC 1 cut(s) 20
Bbv12I GWGCWC 3 cut(s) 66, 1020, 1393
BbvI GCAGC 4 cut(s) 83, 140, 202, 461
BccI CCATC 1 cut(s) 987
BceAI ACGGC 1 cut(s) 82
BcgI CGANNNNNNTGC 2 cut(s) 145, 179
BciT130I CCWGG 1 cut(s) 1067
BclI TGATCA 1 cut(s) 231
BcoDI GTCTC 2 cut(s) 1205, 1278
BfaI CTAG 7 cut(s) 51, 287, 362, 374, 446, 911, 1163
BfmI CTRYAG 1 cut(s) 97
BglII AGATCT 3 cut(s) 471, 572, 631
BisI GCNGC 5 cut(s) 97, 154, 191, 450, 594
BlpI GCTNAGC 1 cut(s) 92
BlsI GCNGC 5 cut(s) 98, 155, 192, 451, 595
Bme1390I CCNGG 1 cut(s) 1067
Bme18I GGWCC 2 cut(s) 938, 1297
BmeRI GACNNNNNGTC 1 cut(s) 812
BmeT110I CYCGRG 1 cut(s) 532
BmgT120I GGNCC 4 cut(s) 558, 938, 1008, 1297
BmiI GGNNCC 7 cut(s) 430, 538, 925, 940, 1135, 1210, 1348
BmrFI CCNGG 1 cut(s) 1067
BmrI ACTGGG 1 cut(s) 252
BmsI GCATC 2 cut(s) 237, 701
BmuI ACTGGG 1 cut(s) 252
BpiI GAAGAC 1 cut(s) 20
BplI GAGNNNNNCTC 1 cut(s) 1375
BpmI CTGGAG 1 cut(s) 315
Bpu1102I GCTNAGC 1 cut(s) 92
BpuEI CTTGAG 1 cut(s) 1244
BsaI GGTCTC 1 cut(s) 1278
BsaJI CCNNGG 3 cut(s) 196, 554, 861
BsaXI ACNNNNNCTCC 4 cut(s) 288, 318, 1065, 1095
Bsc4I CCNNNNNNNGG 2 cut(s) 202, 589
Bse1I ACTGG 3 cut(s) 247, 746, 1210
Bse3DI GCAATG 2 cut(s) 503, 1221
BseBI CCWGG 1 cut(s) 1067
BseDI CCNNGG 3 cut(s) 196, 554, 861
BseGI GGATG 2 cut(s) 252, 382
BseLI CCNNNNNNNGG 2 cut(s) 202, 589
BseMI GCAATG 2 cut(s) 503, 1221
BseMII CTCAG 5 cut(s) 83, 183, 590, 1289, 1373
BseNI ACTGG 3 cut(s) 247, 746, 1210
BseSI GKGCMC 2 cut(s) 66, 539
BseXI GCAGC 4 cut(s) 83, 140, 202, 461
BshFI GGCC 6 cut(s) 206, 560, 783, 836, 1010, 1288
BshNI GGYRCC 2 cut(s) 536, 923
BsiHKAI GWGCWC 3 cut(s) 66, 1020, 1393
BsiHKCI CYCGRG 1 cut(s) 532
BslFI GGGAC 2 cut(s) 924, 1160
BslI CCNNNNNNNGG 2 cut(s) 202, 589
BsmAI GTCTC 2 cut(s) 1205, 1278
BsmFI GGGAC 2 cut(s) 924, 1160
BsmI GAATGC 2 cut(s) 311, 424
BsnI GGCC 6 cut(s) 206, 560, 783, 836, 1010, 1288
Bso31I GGTCTC 1 cut(s) 1278
BsoBI CYCGRG 1 cut(s) 532
Bsp1286I GDGCHC 4 cut(s) 66, 539, 1020, 1393
Bsp1407I TGTACA 1 cut(s) 828
Bsp143I GATC 9 cut(s) 17, 231, 471, 572, 631, 844, 996, 1133, 1208
Bsp1720I GCTNAGC 1 cut(s) 92
Bsp19I CCATGG 1 cut(s) 554
BspACI CCGC 2 cut(s) 593, 596
BspANI GGCC 6 cut(s) 206, 560, 783, 836, 1010, 1288
BspCNI CTCAG 5 cut(s) 84, 182, 589, 1288, 1374
BspLI GGNNCC 7 cut(s) 430, 538, 925, 940, 1135, 1210, 1348
BspMAI CTGCAG 1 cut(s) 101
BspPI GGATC 6 cut(s) 12, 839, 1128, 1141, 1203, 1216
BspT107I GGYRCC 2 cut(s) 536, 923
BspTNI GGTCTC 1 cut(s) 1278
BsrDI GCAATG 2 cut(s) 503, 1221
BsrGI TGTACA 1 cut(s) 828
BsrI ACTGG 3 cut(s) 247, 746, 1210
BssECI CCNNGG 3 cut(s) 196, 554, 861
BssMI GATC 9 cut(s) 17, 231, 471, 572, 631, 844, 996, 1133, 1208
BssT1I CCWWGG 2 cut(s) 554, 861
Bst2UI CCWGG 1 cut(s) 1067
Bst4CI ACNGT 2 cut(s) 1015, 1129
Bst6I CTCTTC 3 cut(s) 643, 1296, 1363
BstAPI GCANNNNNTGC 1 cut(s) 105
BstAUI TGTACA 1 cut(s) 828
BstC8I GCNNGC 2 cut(s) 703, 971
BstDEI CTNAG 9 cut(s) 92, 169, 576, 852, 886, 965, 1196, 1275, 1382
BstDSI CCRYGG 2 cut(s) 196, 554
BstF5I GGATG 2 cut(s) 252, 382
BstKTI GATC 9 cut(s) 20, 234, 474, 575, 634, 847, 999, 1136, 1211
BstMAI GTCTC 2 cut(s) 1205, 1278
BstMBI GATC 9 cut(s) 17, 231, 471, 572, 631, 844, 996, 1133, 1208
BstMWI GCNNNNNNNGC 5 cut(s) 105, 689, 698, 1007, 1058
BstNI CCWGG 1 cut(s) 1067
BstNSI RCATGY 2 cut(s) 705, 973
BstSCI CCNGG 1 cut(s) 1065
BstSFI CTRYAG 1 cut(s) 97
BstSLI GKGCMC 2 cut(s) 66, 539
BstV1I GCAGC 4 cut(s) 83, 140, 202, 461
BstV2I GAAGAC 1 cut(s) 20
BstX2I RGATCY 6 cut(s) 471, 572, 631, 844, 1133, 1208
BstYI RGATCY 6 cut(s) 471, 572, 631, 844, 1133, 1208
BsuRI GGCC 6 cut(s) 206, 560, 783, 836, 1010, 1288
BtgI CCRYGG 2 cut(s) 196, 554
BtgZI GCGATG 1 cut(s) 195
BtsCI GGATG 2 cut(s) 252, 382
BtsI GCAGTG 1 cut(s) 106
BtsIMutI CAGTG 6 cut(s) 106, 402, 702, 1020, 1203, 1393
Cac8I GCNNGC 2 cut(s) 703, 971
CaiI CAGNNNCTG 1 cut(s) 583
Cfr13I GGNCC 4 cut(s) 558, 938, 1008, 1297
Csp6I GTAC 2 cut(s) 829, 1125
CspCI CAANNNNNGTGG 2 cut(s) 1050, 1085
CviQI GTAC 2 cut(s) 829, 1125
DdeI CTNAG 9 cut(s) 92, 169, 576, 852, 886, 965, 1196, 1275, 1382
DpnI GATC 9 cut(s) 19, 233, 473, 574, 633, 846, 998, 1135, 1210
DpnII GATC 9 cut(s) 17, 231, 471, 572, 631, 844, 996, 1133, 1208
DriI GACNNNNNGTC 1 cut(s) 812
Eam1104I CTCTTC 3 cut(s) 643, 1296, 1363
Eam1105I GACNNNNNGTC 1 cut(s) 812
EarI CTCTTC 3 cut(s) 643, 1296, 1363
Ecl136II GAGCTC 1 cut(s) 1391
Eco130I CCWWGG 2 cut(s) 554, 861
Eco147I AGGCCT 1 cut(s) 1288
Eco24I GRGCYC 1 cut(s) 1393
Eco31I GGTCTC 1 cut(s) 1278
Eco32I GATATC 1 cut(s) 1281
Eco47I GGWCC 2 cut(s) 938, 1297
Eco53kI GAGCTC 1 cut(s) 1391
Eco57I CTGAAG 2 cut(s) 737, 865
Eco88I CYCGRG 1 cut(s) 532
EcoICRI GAGCTC 1 cut(s) 1391
EcoRII CCWGG 1 cut(s) 1065
EcoRV GATATC 1 cut(s) 1281
EcoT14I CCWWGG 2 cut(s) 554, 861
EcoT38I GRGCYC 1 cut(s) 1393
ErhI CCWWGG 2 cut(s) 554, 861
FaqI GGGAC 2 cut(s) 924, 1160
FauNDI CATATG 1 cut(s) 280
FbaI TGATCA 1 cut(s) 231
FblI GTMKAC 1 cut(s) 165
Fnu4HI GCNGC 5 cut(s) 97, 154, 191, 450, 594
FokI GGATG 2 cut(s) 259, 369
FriOI GRGCYC 1 cut(s) 1393
Fsp4HI GCNGC 5 cut(s) 97, 154, 191, 450, 594
FspBI CTAG 7 cut(s) 51, 287, 362, 374, 446, 911, 1163
GluI GCNGC 5 cut(s) 97, 154, 191, 450, 594
GsuI CTGGAG 1 cut(s) 315
HaeIII GGCC 6 cut(s) 206, 560, 783, 836, 1010, 1288
HincII GTYRAC 1 cut(s) 166
HindII GTYRAC 1 cut(s) 166
HindIII AAGCTT 1 cut(s) 877
HinfI GANTC 7 cut(s) 56, 167, 290, 550, 616, 757, 1153
HphI GGTGA 4 cut(s) 26, 736, 850, 1300
Hpy166II GTNNAC 3 cut(s) 64, 166, 858
Hpy188I TCNGA 6 cut(s) 84, 172, 549, 756, 1278, 1383
Hpy188III TCNNGA 8 cut(s) 294, 316, 393, 570, 583, 1043, 1101, 1261
Hpy8I GTNNAC 3 cut(s) 64, 166, 858
HpyAV CCTTC 5 cut(s) 466, 761, 858, 925, 1261
HpyCH4III ACNGT 2 cut(s) 1015, 1129
HpyCH4IV ACGT 1 cut(s) 587
HpyF10VI GCNNNNNNNGC 5 cut(s) 105, 689, 698, 1007, 1058
HpyF3I CTNAG 9 cut(s) 92, 169, 576, 852, 886, 965, 1196, 1275, 1382
HpySE526I ACGT 1 cut(s) 587
Ksp22I TGATCA 1 cut(s) 231
Kzo9I GATC 9 cut(s) 17, 231, 471, 572, 631, 844, 996, 1133, 1208
LmnI GCTCC 1 cut(s) 585
Lsp1109I GCAGC 4 cut(s) 83, 140, 202, 461
LweI GCATC 2 cut(s) 237, 701
MaeI CTAG 7 cut(s) 51, 287, 362, 374, 446, 911, 1163
MaeII ACGT 1 cut(s) 587
MaeIII GTNAC 4 cut(s) 217, 675, 889, 988
MalI GATC 9 cut(s) 19, 233, 473, 574, 633, 846, 998, 1135, 1210
MboI GATC 9 cut(s) 17, 231, 471, 572, 631, 844, 996, 1133, 1208
MboII GAAGA 5 cut(s) 20, 466, 630, 1283, 1350
MflI RGATCY 6 cut(s) 471, 572, 631, 844, 1133, 1208
MhlI GDGCHC 4 cut(s) 66, 539, 1020, 1393
MluCI AATT 4 cut(s) 211, 823, 1046, 1227
MlyI GAGTC 3 cut(s) 65, 161, 625
MmeI TCCRAC 1 cut(s) 1111
MroXI GAANNNNTTC 1 cut(s) 1351
MslI CAYNNNNRTG 1 cut(s) 1025
MspR9I CCNGG 1 cut(s) 1067
Mva1269I GAATGC 2 cut(s) 311, 424
MvaI CCWGG 1 cut(s) 1067
MwoI GCNNNNNNNGC 5 cut(s) 105, 689, 698, 1007, 1058
NcoI CCATGG 1 cut(s) 554
NdeI CATATG 1 cut(s) 280
NdeII GATC 9 cut(s) 17, 231, 471, 572, 631, 844, 996, 1133, 1208
NlaIV GGNNCC 7 cut(s) 430, 538, 925, 940, 1135, 1210, 1348
NmeAIII GCCGAG 1 cut(s) 639
NmuCI GTSAC 2 cut(s) 675, 889
NspI RCATGY 2 cut(s) 705, 973
PaeI GCATGC 2 cut(s) 705, 973
PceI AGGCCT 1 cut(s) 1288
PctI GAATGC 2 cut(s) 311, 424
PdmI GAANNNNTTC 1 cut(s) 1351
PfeI GAWTC 4 cut(s) 290, 550, 757, 1153
PkrI GCNGC 5 cut(s) 98, 155, 192, 451, 595
PleI GAGTC 3 cut(s) 64, 161, 624
PpsI GAGTC 3 cut(s) 64, 161, 624
Psp124BI GAGCTC 1 cut(s) 1393
Psp6I CCWGG 1 cut(s) 1065
PspGI CCWGG 1 cut(s) 1065
PspN4I GGNNCC 7 cut(s) 430, 538, 925, 940, 1135, 1210, 1348
PspPI GGNCC 4 cut(s) 558, 938, 1008, 1297
PstI CTGCAG 1 cut(s) 101
PstNI CAGNNNCTG 1 cut(s) 583
PsuI RGATCY 6 cut(s) 471, 572, 631, 844, 1133, 1208
RsaI GTAC 2 cut(s) 830, 1126
RsaNI GTAC 2 cut(s) 829, 1125
RseI CAYNNNNRTG 1 cut(s) 1025
SacI GAGCTC 1 cut(s) 1393
SalI GTCGAC 1 cut(s) 164
SatI GCNGC 5 cut(s) 97, 154, 191, 450, 594
Sau3AI GATC 9 cut(s) 17, 231, 471, 572, 631, 844, 996, 1133, 1208
Sau96I GGNCC 4 cut(s) 558, 938, 1008, 1297
SchI GAGTC 3 cut(s) 65, 161, 625
ScrFI CCNGG 1 cut(s) 1067
SduI GDGCHC 4 cut(s) 66, 539, 1020, 1393
SfaNI GCATC 2 cut(s) 237, 701
SfcI CTRYAG 1 cut(s) 97
SinI GGWCC 2 cut(s) 938, 1297
SmiMI CAYNNNNRTG 1 cut(s) 1025
SmlI CTYRAG 1 cut(s) 1259
SmoI CTYRAG 1 cut(s) 1259
SphI GCATGC 2 cut(s) 705, 973
Sse9I AATT 4 cut(s) 211, 823, 1046, 1227
SseBI AGGCCT 1 cut(s) 1288
SsiI CCGC 2 cut(s) 593, 596
SspMI CTAG 7 cut(s) 51, 287, 362, 374, 446, 911, 1163
SstI GAGCTC 1 cut(s) 1393
StuI AGGCCT 1 cut(s) 1288
StyD4I CCNGG 1 cut(s) 1065
StyI CCWWGG 2 cut(s) 554, 861
TaaI ACNGT 2 cut(s) 1015, 1129
TaiI ACGT 1 cut(s) 590
TaqI TCGA 3 cut(s) 16, 165, 569
TasI AATT 4 cut(s) 211, 823, 1046, 1227
TatI WGTACW 1 cut(s) 828
TauI GCSGC 1 cut(s) 596
TfiI GAWTC 4 cut(s) 290, 550, 757, 1153
TscAI CASTG 5 cut(s) 106, 409, 702, 1020, 1210
TseFI GTSAC 2 cut(s) 675, 889
TseI GCWGC 4 cut(s) 96, 153, 190, 449
Tsp45I GTSAC 2 cut(s) 675, 889
TspDTI ATGAA 5 cut(s) 448, 466, 492, 854, 907
TspGWI ACGGA 1 cut(s) 213
TspRI CASTG 5 cut(s) 106, 409, 702, 1020, 1210
VneI GTGCAC 1 cut(s) 62
VpaK11BI GGWCC 2 cut(s) 938, 1297
XapI RAATTY 1 cut(s) 1046
XceI RCATGY 2 cut(s) 705, 973
XcmI CCANNNNNNNNNTGG 1 cut(s) 1039
XmiI GTMKAC 1 cut(s) 165
XmnI GAANNNNTTC 1 cut(s) 1351
XspI CTAG 7 cut(s) 51, 287, 362, 374, 446, 911, 1163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.