Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0014378

Physical Location & Seq

Genomic Coordinates Forward (+)

15112038 .. 15114254

Gene Structure 2217 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G177200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1410 bp

ATGTGGAACACCATTGGAAAATCATTGTGGCTTAAATCAAACTGCCTCTCACACCAAAATCAAGTTGCTAGTGACTCGGTGCATCGTGGGAACTTGGCTTTGCAGCAGCTGAGCTGCAATGCTTGTCTGGAGGAAAACAAAGCGTGTAAGTGTGATCAAAGCTTTGAGAGCTGCAAGAGAGTCTCGGGTGTTGATGAGCACCATTCAGAGGGCAACAATTCTTTTACTCATTCTGTGATCAACATGACTGGGATGCTCATAGGTTTGGGGCAGTTATCAACTCCATATGCTTTAGAAACTGGGGGGTGGTCTTCTGCATTCTTAATGATAGGACTTGGGGTAATATGTGCATATTGTTCTCATATACTTGGAAAATGCCTTGACAAAAATCCCAAGTCAAGAAGCTACACAGATATTGGACAGCAGGCATTTGGAACCAAAGGAAAACTTATAGCAGCAACCTTGATTTACATGGAGATCTTCATGGCCCTTGTATCCTACACCATCTCATTGCATGACAACCTAAACACAGTGTTCTCGGGGACACAATTTAAGGTGTCATGGGCCAAGTTATCAAAATCTCAGCTCTTAACCTTGATGGCAGTCTTGGTAGCTCTGCCTAGTCTGTGGTTGAGAGATCTCTCTTCTATATCTTTCCTTTCATTCGGAGGTCTTCTCATGTCGCTTGTCATTTTCACATCAGTGGCATGCACCGGCATTTTCGGAGGGGTGAAAGCTAACCACACCATACCAGCCCTCCGGCTTCATAATATTCCAGCAATATCTGGCCTTTATATCTTCAGCTATGCAGGACATATCGTTTTCCCCAATTTATACAAGGCCATGAAAGATCCATCCAAGTTCACCAAGGTATCTATAGTGAGCTTCACTTTAGCGACGATACTTTACGCGACCCTAGCCTTCATGGGAGCCAAGTTGTTTGGTCCCCAAGTGAATCCTCAAATCACTCTAAGCATGCCTCCACATCTTATAGTGACAAAAATTGCATTGTGGGCAACTGTGGTGACACCAATGACCAAATATGCTCTGGAATTTGCACCAATGGCCATCCAGCTTGAGCACAACCTTCCTCATTCTATGAGCTCCAGAACAAAGCTGATCATCAGGGGTACTGTGGGTTCAGTTCTACTTCTGGTGATTCTAGCATTGGCTCTCTCTGTCCCATATTTTGAGTATGTTCTCAGCCTCACAGGATCCCTTGTAAGTATTGGCATTTGTGTCATTTTCCCTTGTGCCTTCTACCTCAAGATCTGTTGGGGTCAGATTTCAAGGCCTCTCCTGCTCCTTAACTTCACTCTCATTGCATTTGGCTTACTTCTGGGAGTAGTTGGAACCATTTCCTCATCAAAGTTGCTCATAAAAAACCTCAACAGAGCTCACTCAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0022857 GO:0034220 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04721 ko04723 ko04727 ko05032 ko05033 map04721 map04723 map04727 map05032 map05033

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

470

Amino Acids

50.97

Weight (kDa)

9.3

Isoelectric Point (pI)

37.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014378)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16740
fragaria_vesca	FvH4_4g12300
malus_domestica	MD04G1027800.v1.1 MD13G1279400.v1.1
prunus_persica	Prupe.1G177200_v2.0.a1
pyrus_communis	pycom04g02440 pycom13g29390
rosa_chinensis	RchiOBHm_Chr4g0410371
rosa_laevigata	RLG00000008434
rosa_multiflora	Rmu_sc0002111.1_g000022
rosa_roxburghii	Rroxscaffold_5G00355180
rosa_rugosa	Rorug04G0102200
rosa_samantha	Rh4AG160300 Rh4BG159300 Rh4CG172400 Rh4DG155200
rosa_wichuraiana	Rw4G013360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	911
AclWI	GGATC	3 cut(s)	845, 1209, 1222
AcoI	YGGCCR	1 cut(s)	1065
AcsI	RAATTY	1 cut(s)	1052
AcuI	CTGAAG	1 cut(s)	784
AfaI	GTAC	1 cut(s)	1132
AfiI	CCNNNNNNNGG	1 cut(s)	208
AgsI	TTSAA	1 cut(s)	1290
AleI	CACNNNNGTG	1 cut(s)	701
Alw21I	GWGCWC	4 cut(s)	201, 1083, 1106, 1399
Alw26I	GTCTC	1 cut(s)	187
AlwI	GGATC	3 cut(s)	845, 1209, 1222
AlwNI	CAGNNNCTG	1 cut(s)	109
Ama87I	CYCGRG	2 cut(s)	184, 538
AoxI	GGCC	6 cut(s)	486, 564, 787, 840, 1065, 1292
ApeKI	GCWGC	5 cut(s)	103, 106, 114, 171, 455
ApoI	RAATTY	1 cut(s)	1052
Asp700I	GAANNNNTTC	1 cut(s)	1357
AspS9I	GGNCC	3 cut(s)	487, 564, 944
AsuHPI	GGTGA	4 cut(s)	742, 856, 1036, 1168
AvaI	CYCGRG	2 cut(s)	184, 538
AvaII	GGWCC	1 cut(s)	944
BaeI	ACNNNNGTAYC	2 cut(s)	855, 888
BalI	TGGCCA	1 cut(s)	1067
BamHI	GGATCC	1 cut(s)	1214
BanII	GRGCYC	2 cut(s)	1106, 1399
BbsI	GAAGAC	2 cut(s)	303, 665
Bbv12I	GWGCWC	4 cut(s)	201, 1083, 1106, 1399
BbvI	GCAGC	5 cut(s)	101, 115, 118, 158, 467
BccI	CCATC	4 cut(s)	512, 592, 862, 1076
BciVI	GTATCC	1 cut(s)	505
BclI	TGATCA	3 cut(s)	154, 237, 1119
BcoDI	GTCTC	1 cut(s)	187
BfaI	CTAG	4 cut(s)	69, 621, 917, 1163
BfmI	CTRYAG	1 cut(s)	876
BfuI	GTATCC	1 cut(s)	505
BglII	AGATCT	3 cut(s)	477, 637, 1269
BisI	GCNGC	5 cut(s)	104, 107, 115, 172, 456
BlpI	GCTNAGC	1 cut(s)	110
BlsI	GCNGC	5 cut(s)	105, 108, 116, 173, 457
Bme18I	GGWCC	1 cut(s)	944
BmeT110I	CYCGRG	2 cut(s)	184, 538
BmgT120I	GGNCC	3 cut(s)	487, 564, 944
BmiI	GGNNCC	5 cut(s)	436, 931, 946, 1216, 1354
BmrI	ACTGGG	2 cut(s)	258, 309
BmsI	GCATC	2 cut(s)	91, 243
BmuI	ACTGGG	2 cut(s)	258, 309
BpiI	GAAGAC	2 cut(s)	303, 665
BplI	GAGNNNNNCTC	2 cut(s)	660, 692
BpmI	CTGGAG	2 cut(s)	149, 1090
Bpu1102I	GCTNAGC	1 cut(s)	110
BpuEI	CTTGAG	2 cut(s)	1097, 1250
BsaJI	CCNNGG	1 cut(s)	867
BsaXI	ACNNNNNCTCC	2 cut(s)	741, 771
Bsc4I	CCNNNNNNNGG	1 cut(s)	208
Bse118I	RCCGGY	1 cut(s)	713
Bse1I	ACTGG	2 cut(s)	253, 304
Bse3DI	GCAATG	3 cut(s)	124, 509, 1320
BseDI	CCNNGG	1 cut(s)	867
BseGI	GGATG	3 cut(s)	258, 854, 1068
BseLI	CCNNNNNNNGG	1 cut(s)	208
BseMI	GCAATG	3 cut(s)	124, 509, 1320
BseMII	CTCAG	3 cut(s)	101, 596, 1216
BseNI	ACTGG	2 cut(s)	253, 304
BseXI	GCAGC	5 cut(s)	101, 115, 118, 158, 467
Bsh1236I	CGCG	1 cut(s)	911
BshFI	GGCC	6 cut(s)	488, 566, 789, 842, 1067, 1294
BsiHKAI	GWGCWC	4 cut(s)	201, 1083, 1106, 1399
BsiHKCI	CYCGRG	2 cut(s)	184, 538
BsiSI	CCGG	2 cut(s)	714, 760
BslFI	GGGAC	3 cut(s)	556, 930, 1166
BslI	CCNNNNNNNGG	1 cut(s)	208
BsmAI	GTCTC	1 cut(s)	187
BsmFI	GGGAC	3 cut(s)	556, 930, 1166
BsmI	GAATGC	1 cut(s)	317
BsnI	GGCC	6 cut(s)	488, 566, 789, 842, 1067, 1294
BsoBI	CYCGRG	2 cut(s)	184, 538
Bsp1286I	GDGCHC	4 cut(s)	201, 1083, 1106, 1399
Bsp143I	GATC	8 cut(s)	154, 237, 477, 637, 850, 1119, 1214, 1269
Bsp1720I	GCTNAGC	1 cut(s)	110
BspANI	GGCC	6 cut(s)	488, 566, 789, 842, 1067, 1294
BspCNI	CTCAG	3 cut(s)	102, 595, 1215
BspFNI	CGCG	1 cut(s)	911
BspLI	GGNNCC	5 cut(s)	436, 931, 946, 1216, 1354
BspPI	GGATC	3 cut(s)	845, 1209, 1222
BsrDI	GCAATG	3 cut(s)	124, 509, 1320
BsrFI	RCCGGY	1 cut(s)	713
BsrI	ACTGG	2 cut(s)	253, 304
BssAI	RCCGGY	1 cut(s)	713
BssECI	CCNNGG	1 cut(s)	867
BssMI	GATC	8 cut(s)	154, 237, 477, 637, 850, 1119, 1214, 1269
BssT1I	CCWWGG	1 cut(s)	867
Bst4CI	ACNGT	3 cut(s)	532, 1021, 1135
Bst6I	CTCTTC	1 cut(s)	649
BstC8I	GCNNGC	3 cut(s)	426, 709, 977
BstDEI	CTNAG	5 cut(s)	110, 582, 971, 1202, 1402
BstF5I	GGATG	3 cut(s)	258, 854, 1068
BstFNI	CGCG	1 cut(s)	911
BstKTI	GATC	8 cut(s)	157, 240, 480, 640, 853, 1122, 1217, 1272
BstMAI	GTCTC	1 cut(s)	187
BstMBI	GATC	8 cut(s)	154, 237, 477, 637, 850, 1119, 1214, 1269
BstMWI	GCNNNNNNNGC	5 cut(s)	168, 917, 1013, 1064, 1300
BstNSI	RCATGY	2 cut(s)	711, 979
BstSFI	CTRYAG	1 cut(s)	876
BstUI	CGCG	1 cut(s)	911
BstV1I	GCAGC	5 cut(s)	101, 115, 118, 158, 467
BstV2I	GAAGAC	2 cut(s)	303, 665
BstX2I	RGATCY	5 cut(s)	477, 637, 850, 1214, 1269
BstYI	RGATCY	5 cut(s)	477, 637, 850, 1214, 1269
BsuI	GTATCC	1 cut(s)	505
BsuRI	GGCC	6 cut(s)	488, 566, 789, 842, 1067, 1294
BtsCI	GGATG	3 cut(s)	258, 854, 1068
BtsIMutI	CAGTG	2 cut(s)	537, 708
Cac8I	GCNNGC	3 cut(s)	426, 709, 977
CaiI	CAGNNNCTG	1 cut(s)	109
Cfr10I	RCCGGY	1 cut(s)	713
Cfr13I	GGNCC	3 cut(s)	487, 564, 944
Csp6I	GTAC	1 cut(s)	1131
CviQI	GTAC	1 cut(s)	1131
DdeI	CTNAG	5 cut(s)	110, 582, 971, 1202, 1402
DpnI	GATC	8 cut(s)	156, 239, 479, 639, 852, 1121, 1216, 1271
DpnII	GATC	8 cut(s)	154, 237, 477, 637, 850, 1119, 1214, 1269
EaeI	YGGCCR	1 cut(s)	1065
Eam1104I	CTCTTC	1 cut(s)	649
EarI	CTCTTC	1 cut(s)	649
Ecl136II	GAGCTC	2 cut(s)	1104, 1397
Eco130I	CCWWGG	1 cut(s)	867
Eco147I	AGGCCT	1 cut(s)	1294
Eco24I	GRGCYC	2 cut(s)	1106, 1399
Eco47I	GGWCC	1 cut(s)	944
Eco53kI	GAGCTC	2 cut(s)	1104, 1397
Eco57I	CTGAAG	1 cut(s)	784
Eco88I	CYCGRG	2 cut(s)	184, 538
EcoICRI	GAGCTC	2 cut(s)	1104, 1397
EcoT14I	CCWWGG	1 cut(s)	867
EcoT38I	GRGCYC	2 cut(s)	1106, 1399
ErhI	CCWWGG	1 cut(s)	867
FalI	AAGNNNNNCTT	2 cut(s)	432, 464
FaqI	GGGAC	3 cut(s)	556, 930, 1166
FauNDI	CATATG	1 cut(s)	286
FbaI	TGATCA	3 cut(s)	154, 237, 1119
Fnu4HI	GCNGC	5 cut(s)	104, 107, 115, 172, 456
FokI	GGATG	3 cut(s)	265, 841, 1055
FriOI	GRGCYC	2 cut(s)	1106, 1399
Fsp4HI	GCNGC	5 cut(s)	104, 107, 115, 172, 456
FspBI	CTAG	4 cut(s)	69, 621, 917, 1163
GluI	GCNGC	5 cut(s)	104, 107, 115, 172, 456
GsuI	CTGGAG	2 cut(s)	149, 1090
HaeIII	GGCC	6 cut(s)	488, 566, 789, 842, 1067, 1294
HapII	CCGG	2 cut(s)	714, 760
HindIII	AAGCTT	1 cut(s)	160
HinfI	GANTC	4 cut(s)	74, 180, 955, 1159
HpaII	CCGG	2 cut(s)	714, 760
HphI	GGTGA	4 cut(s)	742, 856, 1036, 1168
Hpy166II	GTNNAC	1 cut(s)	864
Hpy188I	TCNGA	4 cut(s)	208, 668, 725, 1284
Hpy188III	TCNNGA	5 cut(s)	128, 399, 1049, 1107, 1267
Hpy8I	GTNNAC	1 cut(s)	864
Hpy99I	CGWCG	1 cut(s)	901
HpyAV	CCTTC	3 cut(s)	931, 1097, 1267
HpyCH4III	ACNGT	3 cut(s)	532, 1021, 1135
HpyF10VI	GCNNNNNNNGC	5 cut(s)	168, 917, 1013, 1064, 1300
HpyF3I	CTNAG	5 cut(s)	110, 582, 971, 1202, 1402
Ksp22I	TGATCA	3 cut(s)	154, 237, 1119
Kzo9I	GATC	8 cut(s)	154, 237, 477, 637, 850, 1119, 1214, 1269
LmnI	GCTCC	3 cut(s)	929, 1109, 1308
Lsp1109I	GCAGC	5 cut(s)	101, 115, 118, 158, 467
LweI	GCATC	2 cut(s)	91, 243
MaeI	CTAG	4 cut(s)	69, 621, 917, 1163
MaeIII	GTNAC	3 cut(s)	71, 994, 1024
MalI	GATC	8 cut(s)	156, 239, 479, 639, 852, 1121, 1216, 1271
MboI	GATC	8 cut(s)	154, 237, 477, 637, 850, 1119, 1214, 1269
MboII	GAAGA	5 cut(s)	303, 472, 636, 665, 790
MflI	RGATCY	5 cut(s)	477, 637, 850, 1214, 1269
MhlI	GDGCHC	4 cut(s)	201, 1083, 1106, 1399
MlsI	TGGCCA	1 cut(s)	1067
MluCI	AATT	5 cut(s)	217, 548, 829, 1002, 1052
MluNI	TGGCCA	1 cut(s)	1067
MlyI	GAGTC	2 cut(s)	68, 189
MmeI	TCCRAC	1 cut(s)	1330
Mox20I	TGGCCA	1 cut(s)	1067
MroXI	GAANNNNTTC	1 cut(s)	1357
MscI	TGGCCA	1 cut(s)	1067
MseI	TTAA	5 cut(s)	33, 323, 552, 590, 1308
MslI	CAYNNNNRTG	1 cut(s)	701
Msp20I	TGGCCA	1 cut(s)	1067
MspA1I	CMGCKG	1 cut(s)	109
MspI	CCGG	2 cut(s)	714, 760
Mva1269I	GAATGC	1 cut(s)	317
MvnI	CGCG	1 cut(s)	911
MwoI	GCNNNNNNNGC	5 cut(s)	168, 917, 1013, 1064, 1300
NdeI	CATATG	1 cut(s)	286
NdeII	GATC	8 cut(s)	154, 237, 477, 637, 850, 1119, 1214, 1269
NlaIV	GGNNCC	5 cut(s)	436, 931, 946, 1216, 1354
NmuCI	GTSAC	3 cut(s)	71, 994, 1024
NspI	RCATGY	2 cut(s)	711, 979
OliI	CACNNNNGTG	1 cut(s)	701
PaeI	GCATGC	2 cut(s)	711, 979
PceI	AGGCCT	1 cut(s)	1294
PctI	GAATGC	1 cut(s)	317
PdmI	GAANNNNTTC	1 cut(s)	1357
PfeI	GAWTC	2 cut(s)	955, 1159
PkrI	GCNGC	5 cut(s)	105, 108, 116, 173, 457
PleI	GAGTC	2 cut(s)	68, 188
PpsI	GAGTC	2 cut(s)	68, 188
Psp124BI	GAGCTC	2 cut(s)	1106, 1399
PspN4I	GGNNCC	5 cut(s)	436, 931, 946, 1216, 1354
PspPI	GGNCC	3 cut(s)	487, 564, 944
PsrI	GAACNNNNNNTAC	2 cut(s)	1123, 1155
PstNI	CAGNNNCTG	1 cut(s)	109
PsuI	RGATCY	5 cut(s)	477, 637, 850, 1214, 1269
PvuII	CAGCTG	1 cut(s)	109
RsaI	GTAC	1 cut(s)	1132
RsaNI	GTAC	1 cut(s)	1131
RseI	CAYNNNNRTG	1 cut(s)	701
SacI	GAGCTC	2 cut(s)	1106, 1399
SaqAI	TTAA	5 cut(s)	33, 323, 552, 590, 1308
SatI	GCNGC	5 cut(s)	104, 107, 115, 172, 456
Sau3AI	GATC	8 cut(s)	154, 237, 477, 637, 850, 1119, 1214, 1269
Sau96I	GGNCC	3 cut(s)	487, 564, 944
SchI	GAGTC	2 cut(s)	68, 189
SduI	GDGCHC	4 cut(s)	201, 1083, 1106, 1399
SfaNI	GCATC	2 cut(s)	91, 243
SfcI	CTRYAG	1 cut(s)	876
SinI	GGWCC	1 cut(s)	944
SmiMI	CAYNNNNRTG	1 cut(s)	701
SmlI	CTYRAG	2 cut(s)	1076, 1265
SmoI	CTYRAG	2 cut(s)	1076, 1265
SphI	GCATGC	2 cut(s)	711, 979
Sse9I	AATT	5 cut(s)	217, 548, 829, 1002, 1052
SseBI	AGGCCT	1 cut(s)	1294
SspI	AATATT	1 cut(s)	772
SspMI	CTAG	4 cut(s)	69, 621, 917, 1163
SstI	GAGCTC	2 cut(s)	1106, 1399
StuI	AGGCCT	1 cut(s)	1294
StyI	CCWWGG	1 cut(s)	867
TaaI	ACNGT	3 cut(s)	532, 1021, 1135
TasI	AATT	5 cut(s)	217, 548, 829, 1002, 1052
TfiI	GAWTC	2 cut(s)	955, 1159
Tru1I	TTAA	5 cut(s)	33, 323, 552, 590, 1308
Tru9I	TTAA	5 cut(s)	33, 323, 552, 590, 1308
TscAI	CASTG	2 cut(s)	537, 708
TseFI	GTSAC	3 cut(s)	71, 994, 1024
TseI	GCWGC	5 cut(s)	103, 106, 114, 171, 455
Tsp45I	GTSAC	3 cut(s)	71, 994, 1024
TspDTI	ATGAA	5 cut(s)	472, 651, 755, 860, 913
TspRI	CASTG	2 cut(s)	537, 708
VpaK11BI	GGWCC	1 cut(s)	944
XapI	RAATTY	1 cut(s)	1052
XceI	RCATGY	2 cut(s)	711, 979
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1045
XmnI	GAANNNNTTC	1 cut(s)	1357
XspI	CTAG	4 cut(s)	69, 621, 917, 1163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.