Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0014378

Physical Location & Seq

Genomic Coordinates Forward (+)

2171794 .. 2174102

Gene Structure 2309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g02440.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1398 bp

ATGAACATGTGGAACAAATTGTTCGGAACATCAAGATCAAACTGCCTCCCACACCAGAATCAAGTTCTTGAGAGCGACGCAGTGCAGCGTGCGAATCTGAGCTGCAACGTTTGTCTGGAGGAAACCAAAGTATGTACGTGTGACCAAAGCTTCGAGAGCGGCAAGAGAGTCACGGGTGGTGTTGAGCACCATGCAGAGGCCAACAATTCAGTTACTCAGTCTGTTGTCAACATGAGTGGGATGCTCATAGGTTTGGGACAGTTATCAACTCCATATGCCTTAGAAAATGGGGGTTGGTCTTCTGCATTCCTATTGATAGGACTTGGGGTAATATGTGCATATTGTTCCCATATCCTTGGAAAATGTCTGGACAAACATCCCAAGTCAAGAAGCTACACAGATATTGGACACAATGCATTTGGATCCAGAGGAAAAATTATAGCAGCATCCTTCATTTACGTGGAGATTTTCATGGCCCTTGTGTCCTACACCATCTCTCTGCATGACAATCTAGCCACAGTGCTCTCCGGGATTCAACTCAAGGTTTCGTGGGCTAAGTTACAGAAATCTCAGCTCTTAACCTTGATTGCTGTCTTCGTAGCTCTCCCTAGTCTTTGGTTGAGAGATCTCTCTTCCATATCTTTCCTTTCCTTCGGCGGAGTTCTCATGTCACTCGTCATTTTTATATCAGTGGCATGCACCGCCATTTTCGGAGGGGTGAAATTGAACCACACCATACCTGCCCTCCAGATTCATAACATTCCTGCAATATCTGGCCTTTATAGCTTCAGCTTTGCAGGACATGTTGTTTTCCCCAATTTATACAAGGCCATGAAAGACCCATCCAAGTTCACCAAGGTATCAATAATAAGCTTCACTCTAGTGACAATACTTTACGCATCCCTAGCATTCACGGGAGCCAAGTTGTATGGTCCTCAGGTGAATCCTCAAATCACTCTGAGCATGCCTCCACATCTTATAGTGACAAAGATTGCACTGTGGGCAACTGTGCTGACACCAATGACCAAATATGCTCTTGAATTTGCACCAATGGCTATCCAGCTTGAGCATAACCTTCCTCCCTCTTTGAGCTCCAGAACAAAGTTTCTCATCCGGGGCAGCGTCGGTTCAGTCCTACTTCTGGTGATTCTAGCACTAGCTCTCTCTGTTCCGTATTTTGGGTATGTTCTCAGCCTCACTGGATCACTTGTGAGTGTTGGCATTTGTATCATTTTGCCCTGTGCCTTCTACCTCAAGATATGCTGGGGTCAAATTTCAAGGCCTCTCATGGTCCTCAACCTCACCCTAATTGCATTTGGCACCCTTCTTGGGATAGTTGGAACCATTTCCTCATCAAGGTTGCTCTTTAAAAGCCTGAGCAGAGCTCACTCGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0022857 GO:0034220 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04721 ko04723 ko04727 ko05032 ko05033 map04721 map04723 map04727 map05032 map05033

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

466

Amino Acids

50.26

Weight (kDa)

9.32

Isoelectric Point (pI)

38.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014378)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16740
fragaria_vesca	FvH4_4g12300
malus_domestica	MD04G1027800.v1.1 MD13G1279400.v1.1
prunus_persica	Prupe.1G177200_v2.0.a1
pyrus_communis	pycom04g02440 pycom13g29390
rosa_chinensis	RchiOBHm_Chr4g0410371
rosa_laevigata	RLG00000008434
rosa_multiflora	Rmu_sc0002111.1_g000022
rosa_roxburghii	Rroxscaffold_5G00355180
rosa_rugosa	Rorug04G0102200
rosa_samantha	Rh4AG160300 Rh4BG159300 Rh4CG172400 Rh4DG155200
rosa_wichuraiana	Rw4G013360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	748
AccB1I	GGYRCC	1 cut(s)	1319
AccBSI	CCGCTC	1 cut(s)	159
AciI	CCGC	3 cut(s)	159, 657, 702
AclI	AACGTT	1 cut(s)	108
AclWI	GGATC	3 cut(s)	417, 430, 1210
AcsI	RAATTY	2 cut(s)	1040, 1272
AcuI	CTGAAG	1 cut(s)	772
AfaI	GTAC	1 cut(s)	136
AfiI	CCNNNNNNNGG	5 cut(s)	196, 1141, 1178, 1329, 1356
AflIII	ACRYGT	3 cut(s)	6, 137, 802
AgsI	TTSAA	4 cut(s)	536, 727, 1040, 1278
AleI	CACNNNNGTG	1 cut(s)	881
Alw21I	GWGCWC	4 cut(s)	189, 525, 1094, 1387
AlwI	GGATC	3 cut(s)	417, 430, 1210
AoxI	GGCC	6 cut(s)	198, 474, 775, 828, 1280, 1392
ApeKI	GCWGC	4 cut(s)	85, 102, 443, 1119
ApoI	RAATTY	2 cut(s)	1040, 1272
ArsI	GACNNNNNNTTYG	2 cut(s)	134, 166
Asp700I	GAANNNNTTC	1 cut(s)	1345
AspS9I	GGNCC	3 cut(s)	475, 932, 1291
AsuC2I	CCSGG	2 cut(s)	529, 1115
AsuHPI	GGTGA	5 cut(s)	730, 844, 952, 1156, 1294
AvaII	GGWCC	2 cut(s)	932, 1291
AxyI	CCTNAGG	1 cut(s)	936
BaeI	ACNNNNGTAYC	2 cut(s)	843, 876
BamHI	GGATCC	1 cut(s)	422
BanI	GGYRCC	1 cut(s)	1319
BanII	GRGCYC	2 cut(s)	1094, 1387
BbsI	GAAGAC	2 cut(s)	291, 586
Bbv12I	GWGCWC	4 cut(s)	189, 525, 1094, 1387
BbvI	GCAGC	4 cut(s)	89, 97, 455, 1131
BccI	CCATC	2 cut(s)	500, 850
BcnI	CCSGG	2 cut(s)	529, 1115
BfaI	CTAG	6 cut(s)	512, 609, 881, 905, 1151, 1157
BfuAI	ACCTGC	1 cut(s)	748
BglII	AGATCT	1 cut(s)	625
BisI	GCNGC	5 cut(s)	86, 103, 160, 444, 1120
BlsI	GCNGC	5 cut(s)	87, 104, 161, 445, 1121
Bme1390I	CCNGG	2 cut(s)	529, 1115
Bme18I	GGWCC	2 cut(s)	932, 1291
BmgT120I	GGNCC	3 cut(s)	475, 932, 1291
BmiI	GGNNCC	4 cut(s)	424, 919, 1321, 1342
BmrFI	CCNGG	2 cut(s)	529, 1115
BmsI	GCATC	3 cut(s)	231, 455, 908
BpiI	GAAGAC	2 cut(s)	291, 586
BplI	GAGNNNNNCTC	3 cut(s)	952, 984, 1369
BpmI	CTGGAG	3 cut(s)	137, 731, 1078
Bpu10I	CCTNAGC	1 cut(s)	1376
BpuEI	CTTGAG	4 cut(s)	89, 524, 1085, 1238
BpuMI	CCSGG	2 cut(s)	529, 1115
BsaAI	YACGTR	2 cut(s)	138, 460
BsaJI	CCNNGG	3 cut(s)	355, 855, 1114
BsaXI	ACNNNNNCTCC	2 cut(s)	729, 759
Bsc4I	CCNNNNNNNGG	5 cut(s)	196, 1141, 1178, 1329, 1356
Bse1I	ACTGG	1 cut(s)	1204
Bse21I	CCTNAGG	1 cut(s)	936
BseDI	CCNNGG	3 cut(s)	355, 855, 1114
BseGI	GGATG	6 cut(s)	246, 376, 446, 842, 899, 1110
BseLI	CCNNNNNNNGG	5 cut(s)	196, 1141, 1178, 1329, 1356
BseMII	CTCAG	7 cut(s)	89, 230, 584, 950, 950, 1204, 1367
BseNI	ACTGG	1 cut(s)	1204
BseXI	GCAGC	4 cut(s)	89, 97, 455, 1131
BseYI	CCCAGC	1 cut(s)	1263
BsgI	GTGCAG	1 cut(s)	104
BshFI	GGCC	6 cut(s)	200, 476, 777, 830, 1282, 1394
BshNI	GGYRCC	1 cut(s)	1319
BsiHKAI	GWGCWC	4 cut(s)	189, 525, 1094, 1387
BsiSI	CCGG	2 cut(s)	528, 1114
BslFI	GGGAC	1 cut(s)	270
BslI	CCNNNNNNNGG	5 cut(s)	196, 1141, 1178, 1329, 1356
BsmFI	GGGAC	1 cut(s)	270
BsmI	GAATGC	2 cut(s)	305, 908
BsnI	GGCC	6 cut(s)	200, 476, 777, 830, 1282, 1394
Bsp1286I	GDGCHC	4 cut(s)	189, 525, 1094, 1387
Bsp143I	GATC	4 cut(s)	35, 422, 625, 1202
BspACI	CCGC	3 cut(s)	159, 657, 702
BspANI	GGCC	6 cut(s)	200, 476, 777, 830, 1282, 1394
BspCNI	CTCAG	7 cut(s)	90, 229, 583, 949, 951, 1203, 1368
BspLI	GGNNCC	4 cut(s)	424, 919, 1321, 1342
BspMI	ACCTGC	1 cut(s)	748
BspPI	GGATC	3 cut(s)	417, 430, 1210
BspT107I	GGYRCC	1 cut(s)	1319
BsrBI	CCGCTC	1 cut(s)	159
BsrI	ACTGG	1 cut(s)	1204
BssECI	CCNNGG	3 cut(s)	355, 855, 1114
BssMI	GATC	4 cut(s)	35, 422, 625, 1202
BssT1I	CCWWGG	2 cut(s)	355, 855
Bst4CI	ACNGT	4 cut(s)	261, 520, 999, 1009
Bst6I	CTCTTC	1 cut(s)	637
BstBAI	YACGTR	2 cut(s)	138, 460
BstC8I	GCNNGC	3 cut(s)	90, 697, 965
BstDEI	CTNAG	9 cut(s)	98, 216, 280, 555, 570, 936, 959, 1190, 1376
BstENI	CCTNNNNNAGG	1 cut(s)	1354
BstF5I	GGATG	6 cut(s)	246, 376, 446, 842, 899, 1110
BstKTI	GATC	4 cut(s)	38, 425, 628, 1205
BstMBI	GATC	4 cut(s)	35, 422, 625, 1202
BstMWI	GCNNNNNNNGC	7 cut(s)	156, 701, 783, 905, 1001, 1052, 1391
BstNSI	RCATGY	4 cut(s)	10, 699, 806, 967
BstSCI	CCNGG	2 cut(s)	527, 1113
BstV1I	GCAGC	4 cut(s)	89, 97, 455, 1131
BstV2I	GAAGAC	2 cut(s)	291, 586
BstX2I	RGATCY	2 cut(s)	422, 625
BstXI	CCANNNNNNTGG	1 cut(s)	356
BstYI	RGATCY	2 cut(s)	422, 625
Bsu36I	CCTNAGG	1 cut(s)	936
BsuRI	GGCC	6 cut(s)	200, 476, 777, 830, 1282, 1394
BtsCI	GGATG	6 cut(s)	246, 376, 446, 842, 899, 1110
BtsI	GCAGTG	1 cut(s)	87
BtsIMutI	CAGTG	5 cut(s)	87, 525, 696, 995, 1197
BveI	ACCTGC	1 cut(s)	748
Cac8I	GCNNGC	3 cut(s)	90, 697, 965
Cfr13I	GGNCC	3 cut(s)	475, 932, 1291
CseI	GACGC	2 cut(s)	86, 1111
Csp6I	GTAC	1 cut(s)	135
CspCI	CAANNNNNGTGG	2 cut(s)	217, 252
CviQI	GTAC	1 cut(s)	135
DdeI	CTNAG	9 cut(s)	98, 216, 280, 555, 570, 936, 959, 1190, 1376
DpnI	GATC	4 cut(s)	37, 424, 627, 1204
DpnII	GATC	4 cut(s)	35, 422, 625, 1202
DraI	TTTAAA	1 cut(s)	1369
Eam1104I	CTCTTC	1 cut(s)	637
EarI	CTCTTC	1 cut(s)	637
EciI	GGCGGA	1 cut(s)	672
Ecl136II	GAGCTC	2 cut(s)	1092, 1385
Eco130I	CCWWGG	2 cut(s)	355, 855
Eco147I	AGGCCT	1 cut(s)	1282
Eco24I	GRGCYC	2 cut(s)	1094, 1387
Eco47I	GGWCC	2 cut(s)	932, 1291
Eco53kI	GAGCTC	2 cut(s)	1092, 1385
Eco57I	CTGAAG	1 cut(s)	772
Eco81I	CCTNAGG	1 cut(s)	936
EcoICRI	GAGCTC	2 cut(s)	1092, 1385
EcoNI	CCTNNNNNAGG	1 cut(s)	1354
EcoT14I	CCWWGG	2 cut(s)	355, 855
EcoT22I	ATGCAT	1 cut(s)	418
EcoT38I	GRGCYC	2 cut(s)	1094, 1387
ErhI	CCWWGG	2 cut(s)	355, 855
FaqI	GGGAC	1 cut(s)	270
FauNDI	CATATG	1 cut(s)	274
Fnu4HI	GCNGC	5 cut(s)	86, 103, 160, 444, 1120
FokI	GGATG	6 cut(s)	253, 363, 433, 829, 886, 1097
FriOI	GRGCYC	2 cut(s)	1094, 1387
Fsp4HI	GCNGC	5 cut(s)	86, 103, 160, 444, 1120
FspBI	CTAG	6 cut(s)	512, 609, 881, 905, 1151, 1157
GluI	GCNGC	5 cut(s)	86, 103, 160, 444, 1120
GsaI	CCCAGC	1 cut(s)	1267
GsuI	CTGGAG	3 cut(s)	137, 731, 1078
HaeIII	GGCC	6 cut(s)	200, 476, 777, 830, 1282, 1394
HapII	CCGG	2 cut(s)	528, 1114
HgaI	GACGC	2 cut(s)	86, 1111
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HindIII	AAGCTT	2 cut(s)	148, 871
HinfI	GANTC	7 cut(s)	58, 94, 168, 532, 751, 943, 1147
HpaII	CCGG	2 cut(s)	528, 1114
HphI	GGTGA	5 cut(s)	730, 844, 952, 1156, 1294
Hpy166II	GTNNAC	2 cut(s)	229, 852
Hpy188I	TCNGA	4 cut(s)	26, 99, 713, 960
Hpy8I	GTNNAC	2 cut(s)	229, 852
Hpy99I	CGWCG	2 cut(s)	80, 1127
HpyAV	CCTTC	5 cut(s)	460, 661, 1085, 1255, 1334
HpyCH4III	ACNGT	4 cut(s)	261, 520, 999, 1009
HpyCH4IV	ACGT	3 cut(s)	108, 137, 459
HpyF10VI	GCNNNNNNNGC	7 cut(s)	156, 701, 783, 905, 1001, 1052, 1391
HpyF3I	CTNAG	9 cut(s)	98, 216, 280, 555, 570, 936, 959, 1190, 1376
HpySE526I	ACGT	3 cut(s)	108, 137, 459
Kzo9I	GATC	4 cut(s)	35, 422, 625, 1202
LmnI	GCTCC	2 cut(s)	917, 1097
Lsp1109I	GCAGC	4 cut(s)	89, 97, 455, 1131
LweI	GCATC	3 cut(s)	231, 455, 908
MaeI	CTAG	6 cut(s)	512, 609, 881, 905, 1151, 1157
MaeII	ACGT	3 cut(s)	108, 137, 459
MaeIII	GTNAC	7 cut(s)	140, 169, 211, 558, 669, 883, 982
MalI	GATC	4 cut(s)	37, 424, 627, 1204
MbiI	CCGCTC	1 cut(s)	159
MboI	GATC	4 cut(s)	35, 422, 625, 1202
MboII	GAAGA	3 cut(s)	291, 586, 624
MflI	RGATCY	2 cut(s)	422, 625
MhlI	GDGCHC	4 cut(s)	189, 525, 1094, 1387
MluCI	AATT	8 cut(s)	17, 205, 435, 722, 817, 1040, 1272, 1308
MlyI	GAGTC	1 cut(s)	177
MmeI	TCCRAC	1 cut(s)	1318
Mph1103I	ATGCAT	1 cut(s)	418
MroXI	GAANNNNTTC	1 cut(s)	1345
MseI	TTAA	2 cut(s)	578, 1368
MslI	CAYNNNNRTG	2 cut(s)	458, 881
MspI	CCGG	2 cut(s)	528, 1114
MspR9I	CCNGG	2 cut(s)	529, 1115
Mva1269I	GAATGC	2 cut(s)	305, 908
MwoI	GCNNNNNNNGC	7 cut(s)	156, 701, 783, 905, 1001, 1052, 1391
NciI	CCSGG	2 cut(s)	529, 1115
NdeI	CATATG	1 cut(s)	274
NdeII	GATC	4 cut(s)	35, 422, 625, 1202
NlaIV	GGNNCC	4 cut(s)	424, 919, 1321, 1342
NmeAIII	GCCGAG	1 cut(s)	1370
NmuCI	GTSAC	5 cut(s)	140, 169, 669, 883, 982
NsiI	ATGCAT	1 cut(s)	418
NspI	RCATGY	4 cut(s)	10, 699, 806, 967
OliI	CACNNNNGTG	1 cut(s)	881
PaeI	GCATGC	2 cut(s)	699, 967
PceI	AGGCCT	1 cut(s)	1282
PciI	ACATGT	2 cut(s)	6, 802
PctI	GAATGC	2 cut(s)	305, 908
PdmI	GAANNNNTTC	1 cut(s)	1345
PfeI	GAWTC	6 cut(s)	58, 94, 532, 751, 943, 1147
PfoI	TCCNGGA	1 cut(s)	527
PkrI	GCNGC	5 cut(s)	87, 104, 161, 445, 1121
PleI	GAGTC	1 cut(s)	176
PpsI	GAGTC	1 cut(s)	176
Ppu21I	YACGTR	2 cut(s)	138, 460
PscI	ACATGT	2 cut(s)	6, 802
Psp124BI	GAGCTC	2 cut(s)	1094, 1387
Psp1406I	AACGTT	1 cut(s)	108
PspFI	CCCAGC	1 cut(s)	1263
PspN4I	GGNNCC	4 cut(s)	424, 919, 1321, 1342
PspPI	GGNCC	3 cut(s)	475, 932, 1291
PsuI	RGATCY	2 cut(s)	422, 625
RsaI	GTAC	1 cut(s)	136
RsaNI	GTAC	1 cut(s)	135
RseI	CAYNNNNRTG	2 cut(s)	458, 881
SacI	GAGCTC	2 cut(s)	1094, 1387
SaqAI	TTAA	2 cut(s)	578, 1368
SatI	GCNGC	5 cut(s)	86, 103, 160, 444, 1120
Sau3AI	GATC	4 cut(s)	35, 422, 625, 1202
Sau96I	GGNCC	3 cut(s)	475, 932, 1291
SchI	GAGTC	1 cut(s)	177
ScrFI	CCNGG	2 cut(s)	529, 1115
SduI	GDGCHC	4 cut(s)	189, 525, 1094, 1387
SfaNI	GCATC	3 cut(s)	231, 455, 908
SinI	GGWCC	2 cut(s)	932, 1291
SmiMI	CAYNNNNRTG	2 cut(s)	458, 881
SmlI	CTYRAG	4 cut(s)	68, 539, 1064, 1253
SmoI	CTYRAG	4 cut(s)	68, 539, 1064, 1253
SphI	GCATGC	2 cut(s)	699, 967
Sse9I	AATT	8 cut(s)	17, 205, 435, 722, 817, 1040, 1272, 1308
SseBI	AGGCCT	1 cut(s)	1282
SsiI	CCGC	3 cut(s)	159, 657, 702
SspMI	CTAG	6 cut(s)	512, 609, 881, 905, 1151, 1157
SstI	GAGCTC	2 cut(s)	1094, 1387
StuI	AGGCCT	1 cut(s)	1282
StyD4I	CCNGG	2 cut(s)	527, 1113
StyI	CCWWGG	2 cut(s)	355, 855
TaaI	ACNGT	4 cut(s)	261, 520, 999, 1009
TaiI	ACGT	3 cut(s)	111, 140, 462
TaqI	TCGA	1 cut(s)	153
TasI	AATT	8 cut(s)	17, 205, 435, 722, 817, 1040, 1272, 1308
TauI	GCSGC	1 cut(s)	162
TfiI	GAWTC	6 cut(s)	58, 94, 532, 751, 943, 1147
Tru1I	TTAA	2 cut(s)	578, 1368
Tru9I	TTAA	2 cut(s)	578, 1368
TscAI	CASTG	5 cut(s)	87, 525, 696, 1002, 1204
TseFI	GTSAC	5 cut(s)	140, 169, 669, 883, 982
TseI	GCWGC	4 cut(s)	85, 102, 443, 1119
Tsp45I	GTSAC	5 cut(s)	140, 169, 669, 883, 982
TspDTI	ATGAA	5 cut(s)	17, 442, 460, 743, 848
TspGWI	ACGGA	1 cut(s)	1161
TspRI	CASTG	5 cut(s)	87, 525, 696, 1002, 1204
VpaK11BI	GGWCC	2 cut(s)	932, 1291
XagI	CCTNNNNNAGG	1 cut(s)	1354
XapI	RAATTY	2 cut(s)	1040, 1272
XceI	RCATGY	4 cut(s)	10, 699, 806, 967
XmnI	GAANNNNTTC	1 cut(s)	1345
XspI	CTAG	6 cut(s)	512, 609, 881, 905, 1151, 1157
Zsp2I	ATGCAT	1 cut(s)	418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.