Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002111.1

Orthogroup ID

OG0014378

Physical Location & Seq

Genomic Coordinates Forward (+)

99978 .. 102163

Gene Structure 2186 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002111.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1401 bp

atgttcaagtggtttcaatcaaagtgtcttccgcaccaaaaccaagttgctagtgattcggtgcatggcaggaacttggctctgaatgaactaggctgcagtgtttgcctggaggaaaacaaagtgtgcaaatgtgagcaaagtttcgagagctgtaagaaagtcgactcatcatcagatgttagcgataagcaacatggagagtccaataattctgttactcatgctgtgatcaacatgactgggatgctcataggtttggggcagttatcaactccatatgccatagaatctggagggtgggtttctgcattcttaatgataggacttggtgttgtatgtgcttattgttctcatctactagggaaatgcctagacaaacatcccaagtcaagaagctacacagatattggacagaatgcatttggaaccaaaggaaaactcctagcagcaaccttcatttacttggagatcttcatggcccttgtgtcctacaccatctcattgcatgacaacataaacagagttttctcggggacccaagttcagattccatgggccaagttatcgagatctcagctcctgacgttggtggcggttctgattgctctgccaagtctgtggttgagagatctctcttccatatcattcctttcctttggtggtgttctcatgtcagttgccattttttcatcagtggcatgcacaggcatttttggaggggtgaaagctaatcatagtataccagtccttcagattcaaaacattcctgcaatatctggcctatatatcttcagctatgcaggacatattgtctttcctaatttatacaaggccatgaaagatccttccaagttcaccaaggtatctataataagcttcagcttggtcactctgctttacggcgctctagccttcatgggtgccaagttttttggtccccaagtaaatccacaaatcactctaagcatgcctccccatcttattgttacaaagattgcactatgggccacagtgctcacaccaatgaccaaatatgctttggaatttgcaccaatggcaatccagctggagcataatctcccagattccatgagttcaagaacaaagttgattgtgagaggtactgttggttcctttctacttctggtgattctcgcactagctctgtcagttccatattttcagtatgttctcagcctcactggatcccttgtaagcattgctatttgtgtcattttcccttgtgccttctacctcaagatctgttgggctcagatatcaaggcctcttctggtcctaaacttcaccttgattgcatttgggtttgttcttggagtgtttggaaccatttcctcatcaaagttgctcatgcagaatctaagcagactcactgattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0022857 GO:0034220 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04721 ko04723 ko04727 ko05032 ko05033 map04721 map04723 map04727 map05032 map05033

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

466

Amino Acids

50.79

Weight (kDa)

9.08

Isoelectric Point (pI)

36.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014378)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16740
fragaria_vesca	FvH4_4g12300
malus_domestica	MD04G1027800.v1.1 MD13G1279400.v1.1
prunus_persica	Prupe.1G177200_v2.0.a1
pyrus_communis	pycom04g02440 pycom13g29390
rosa_chinensis	RchiOBHm_Chr4g0410371
rosa_laevigata	RLG00000008434
rosa_multiflora	Rmu_sc0002111.1_g000022
rosa_roxburghii	Rroxscaffold_5G00355180
rosa_rugosa	Rorug04G0102200
rosa_samantha	Rh4AG160300 Rh4BG159300 Rh4CG172400 Rh4DG155200
rosa_wichuraiana	Rw4G013360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	923
AccI	GTMKAC	2 cut(s)	165, 742
AciI	CCGC	2 cut(s)	32, 596
AclWI	GGATC	3 cut(s)	839, 1203, 1216
AcsI	RAATTY	1 cut(s)	1046
AcuI	CTGAAG	3 cut(s)	737, 778, 865
AfaI	GTAC	1 cut(s)	1126
AfiI	CCNNNNNNNGG	1 cut(s)	589
AgsI	TTSAA	4 cut(s)	7, 17, 761, 1101
AhdI	GACNNNNNGTC	1 cut(s)	812
AjnI	CCWGG	1 cut(s)	108
AjuI	GAANNNNNNNTTGG	2 cut(s)	534, 566
AluBI	AGCT	9 cut(s)	153, 399, 580, 731, 798, 879, 885, 1069, 1166
AluI	AGCT	9 cut(s)	153, 399, 580, 731, 798, 879, 885, 1069, 1166
Alw21I	GWGCWC	1 cut(s)	1020
AlwI	GGATC	3 cut(s)	839, 1203, 1216
AlwNI	CAGNNNCTG	1 cut(s)	583
Ama87I	CYCGRG	1 cut(s)	532
AoxI	GGCC	6 cut(s)	480, 558, 781, 834, 1008, 1286
ApeKI	GCWGC	2 cut(s)	96, 449
ApoI	RAATTY	1 cut(s)	1046
Asp700I	GAANNNNTTC	1 cut(s)	1351
AspLEI	GCGC	1 cut(s)	908
AspS9I	GGNCC	6 cut(s)	481, 537, 558, 938, 1008, 1297
AsuHPI	GGTGA	4 cut(s)	736, 850, 1162, 1300
AvaI	CYCGRG	1 cut(s)	532
AvaII	GGWCC	3 cut(s)	537, 938, 1297
BaeI	ACNNNNGTAYC	2 cut(s)	849, 882
BamHI	GGATCC	1 cut(s)	1208
BanI	GGYRCC	1 cut(s)	923
BanII	GRGCYC	1 cut(s)	1276
BbsI	GAAGAC	1 cut(s)	20
Bbv12I	GWGCWC	1 cut(s)	1020
BbvI	GCAGC	2 cut(s)	83, 461
BccI	CCATC	2 cut(s)	506, 987
BceAI	ACGGC	1 cut(s)	919
BciT130I	CCWGG	1 cut(s)	110
BclI	TGATCA	1 cut(s)	231
BfaI	CTAG	7 cut(s)	51, 92, 362, 374, 446, 911, 1163
BfmI	CTRYAG	1 cut(s)	97
BfoI	RGCGCY	1 cut(s)	909
BglII	AGATCT	4 cut(s)	471, 572, 631, 1263
BisI	GCNGC	2 cut(s)	97, 450
BlsI	GCNGC	2 cut(s)	98, 451
Bme1390I	CCNGG	1 cut(s)	110
Bme18I	GGWCC	3 cut(s)	537, 938, 1297
BmeRI	GACNNNNNGTC	1 cut(s)	812
BmeT110I	CYCGRG	1 cut(s)	532
BmgT120I	GGNCC	6 cut(s)	481, 537, 558, 938, 1008, 1297
BmiI	GGNNCC	8 cut(s)	430, 538, 539, 925, 940, 1135, 1210, 1348
BmrFI	CCNGG	1 cut(s)	110
BmrI	ACTGGG	1 cut(s)	252
BmsI	GCATC	1 cut(s)	237
BmuI	ACTGGG	1 cut(s)	252
BpiI	GAAGAC	1 cut(s)	20
BpmI	CTGGAG	3 cut(s)	131, 315, 1091
BpuEI	CTTGAG	1 cut(s)	1244
BsaJI	CCNNGG	2 cut(s)	554, 861
BsaXI	ACNNNNNCTCC	2 cut(s)	288, 318
Bsc4I	CCNNNNNNNGG	1 cut(s)	589
Bse1I	ACTGG	3 cut(s)	247, 746, 1210
Bse3DI	GCAATG	2 cut(s)	503, 1221
BseBI	CCWGG	1 cut(s)	110
BseDI	CCNNGG	2 cut(s)	554, 861
BseGI	GGATG	2 cut(s)	252, 382
BseLI	CCNNNNNNNGG	1 cut(s)	589
BseMI	GCAATG	2 cut(s)	503, 1221
BseMII	CTCAG	3 cut(s)	590, 1210, 1289
BseNI	ACTGG	3 cut(s)	247, 746, 1210
BseXI	GCAGC	2 cut(s)	83, 461
BshFI	GGCC	6 cut(s)	482, 560, 783, 836, 1010, 1288
BshNI	GGYRCC	1 cut(s)	923
BsiHKAI	GWGCWC	1 cut(s)	1020
BsiHKCI	CYCGRG	1 cut(s)	532
BslFI	GGGAC	2 cut(s)	550, 924
BslI	CCNNNNNNNGG	1 cut(s)	589
BsmFI	GGGAC	2 cut(s)	550, 924
BsmI	GAATGC	2 cut(s)	311, 424
BsnI	GGCC	6 cut(s)	482, 560, 783, 836, 1010, 1288
BsoBI	CYCGRG	1 cut(s)	532
Bsp1286I	GDGCHC	2 cut(s)	1020, 1276
Bsp143I	GATC	7 cut(s)	231, 471, 572, 631, 844, 1208, 1263
Bsp19I	CCATGG	1 cut(s)	554
BspACI	CCGC	2 cut(s)	32, 596
BspANI	GGCC	6 cut(s)	482, 560, 783, 836, 1010, 1288
BspCNI	CTCAG	3 cut(s)	589, 1209, 1288
BspLI	GGNNCC	8 cut(s)	430, 538, 539, 925, 940, 1135, 1210, 1348
BspMAI	CTGCAG	1 cut(s)	101
BspPI	GGATC	3 cut(s)	839, 1203, 1216
BspT107I	GGYRCC	1 cut(s)	923
BsrDI	GCAATG	2 cut(s)	503, 1221
BsrI	ACTGG	3 cut(s)	247, 746, 1210
BssECI	CCNNGG	2 cut(s)	554, 861
BssMI	GATC	7 cut(s)	231, 471, 572, 631, 844, 1208, 1263
BssNAI	GTATAC	1 cut(s)	743
BssT1I	CCWWGG	2 cut(s)	554, 861
Bst1107I	GTATAC	1 cut(s)	743
Bst2UI	CCWGG	1 cut(s)	110
Bst4CI	ACNGT	2 cut(s)	1015, 1129
Bst6I	CTCTTC	2 cut(s)	643, 1296
BstAPI	GCANNNNNTGC	1 cut(s)	105
BstC8I	GCNNGC	2 cut(s)	703, 971
BstDEI	CTNAG	5 cut(s)	576, 965, 1196, 1275, 1382
BstDSI	CCRYGG	1 cut(s)	554
BstF5I	GGATG	2 cut(s)	252, 382
BstH2I	RGCGCY	1 cut(s)	909
BstHHI	GCGC	1 cut(s)	908
BstKTI	GATC	7 cut(s)	234, 474, 575, 634, 847, 1211, 1266
BstMBI	GATC	7 cut(s)	231, 471, 572, 631, 844, 1208, 1263
BstMWI	GCNNNNNNNGC	3 cut(s)	105, 1007, 1058
BstNI	CCWGG	1 cut(s)	110
BstNSI	RCATGY	2 cut(s)	705, 973
BstSCI	CCNGG	1 cut(s)	108
BstSFI	CTRYAG	1 cut(s)	97
BstV1I	GCAGC	2 cut(s)	83, 461
BstV2I	GAAGAC	1 cut(s)	20
BstX2I	RGATCY	6 cut(s)	471, 572, 631, 844, 1208, 1263
BstXI	CCANNNNNNTGG	1 cut(s)	621
BstYI	RGATCY	6 cut(s)	471, 572, 631, 844, 1208, 1263
BstZ17I	GTATAC	1 cut(s)	743
BsuRI	GGCC	6 cut(s)	482, 560, 783, 836, 1010, 1288
BtgI	CCRYGG	1 cut(s)	554
BtsCI	GGATG	2 cut(s)	252, 382
BtsI	GCAGTG	1 cut(s)	106
BtsIMutI	CAGTG	5 cut(s)	106, 702, 1020, 1203, 1392
Cac8I	GCNNGC	2 cut(s)	703, 971
CaiI	CAGNNNCTG	1 cut(s)	583
CfoI	GCGC	1 cut(s)	908
Cfr13I	GGNCC	6 cut(s)	481, 537, 558, 938, 1008, 1297
Csp6I	GTAC	1 cut(s)	1125
CviQI	GTAC	1 cut(s)	1125
DdeI	CTNAG	5 cut(s)	576, 965, 1196, 1275, 1382
DpnI	GATC	7 cut(s)	233, 473, 574, 633, 846, 1210, 1265
DpnII	GATC	7 cut(s)	231, 471, 572, 631, 844, 1208, 1263
DriI	GACNNNNNGTC	1 cut(s)	812
Eam1104I	CTCTTC	2 cut(s)	643, 1296
Eam1105I	GACNNNNNGTC	1 cut(s)	812
EarI	CTCTTC	2 cut(s)	643, 1296
Eco130I	CCWWGG	2 cut(s)	554, 861
Eco147I	AGGCCT	1 cut(s)	1288
Eco24I	GRGCYC	1 cut(s)	1276
Eco32I	GATATC	1 cut(s)	1281
Eco47I	GGWCC	3 cut(s)	537, 938, 1297
Eco57I	CTGAAG	3 cut(s)	737, 778, 865
Eco88I	CYCGRG	1 cut(s)	532
EcoO109I	RGGNCCY	1 cut(s)	537
EcoRII	CCWGG	1 cut(s)	108
EcoRV	GATATC	1 cut(s)	1281
EcoT14I	CCWWGG	2 cut(s)	554, 861
EcoT22I	ATGCAT	1 cut(s)	424
EcoT38I	GRGCYC	1 cut(s)	1276
ErhI	CCWWGG	2 cut(s)	554, 861
FaqI	GGGAC	2 cut(s)	550, 924
FauNDI	CATATG	1 cut(s)	280
FbaI	TGATCA	1 cut(s)	231
FblI	GTMKAC	2 cut(s)	165, 742
Fnu4HI	GCNGC	2 cut(s)	97, 450
FokI	GGATG	2 cut(s)	259, 369
FriOI	GRGCYC	1 cut(s)	1276
Fsp4HI	GCNGC	2 cut(s)	97, 450
FspBI	CTAG	7 cut(s)	51, 92, 362, 374, 446, 911, 1163
GlaI	GCGC	1 cut(s)	907
GluI	GCNGC	2 cut(s)	97, 450
GsuI	CTGGAG	3 cut(s)	131, 315, 1091
HaeII	RGCGCY	1 cut(s)	909
HaeIII	GGCC	6 cut(s)	482, 560, 783, 836, 1010, 1288
HhaI	GCGC	1 cut(s)	908
Hin6I	GCGC	1 cut(s)	906
HinP1I	GCGC	1 cut(s)	906
HincII	GTYRAC	1 cut(s)	166
HindII	GTYRAC	1 cut(s)	166
HindIII	AAGCTT	1 cut(s)	877
HphI	GGTGA	4 cut(s)	736, 850, 1162, 1300
Hpy166II	GTNNAC	3 cut(s)	166, 743, 858
Hpy188I	TCNGA	6 cut(s)	84, 178, 549, 603, 756, 1278
Hpy188III	TCNNGA	7 cut(s)	148, 294, 393, 570, 583, 1101, 1261
Hpy8I	GTNNAC	3 cut(s)	166, 743, 858
HpyAV	CCTTC	5 cut(s)	466, 761, 858, 925, 1261
HpyCH4III	ACNGT	2 cut(s)	1015, 1129
HpyCH4IV	ACGT	1 cut(s)	587
HpyF10VI	GCNNNNNNNGC	3 cut(s)	105, 1007, 1058
HpyF3I	CTNAG	5 cut(s)	576, 965, 1196, 1275, 1382
HpySE526I	ACGT	1 cut(s)	587
HspAI	GCGC	1 cut(s)	906
KflI	GGGWCCC	1 cut(s)	537
Ksp22I	TGATCA	1 cut(s)	231
Kzo9I	GATC	7 cut(s)	231, 471, 572, 631, 844, 1208, 1263
LmnI	GCTCC	2 cut(s)	585, 1072
Lsp1109I	GCAGC	2 cut(s)	83, 461
LweI	GCATC	1 cut(s)	237
MaeI	CTAG	7 cut(s)	51, 92, 362, 374, 446, 911, 1163
MaeII	ACGT	1 cut(s)	587
MaeIII	GTNAC	3 cut(s)	217, 889, 988
MalI	GATC	7 cut(s)	233, 473, 574, 633, 846, 1210, 1265
MboI	GATC	7 cut(s)	231, 471, 572, 631, 844, 1208, 1263
MboII	GAAGA	5 cut(s)	20, 466, 630, 784, 1283
MflI	RGATCY	6 cut(s)	471, 572, 631, 844, 1208, 1263
MhlI	GDGCHC	2 cut(s)	1020, 1276
MluCI	AATT	3 cut(s)	211, 823, 1046
MlyI	GAGTC	3 cut(s)	161, 212, 1383
MnlI	CCTC	9 cut(s)	106, 290, 713, 984, 1115, 1211, 1268, 1299, 1366
Mph1103I	ATGCAT	1 cut(s)	424
MroXI	GAANNNNTTC	1 cut(s)	1351
MseI	TTAA	1 cut(s)	317
MslI	CAYNNNNRTG	1 cut(s)	1025
MspA1I	CMGCKG	1 cut(s)	1069
MspR9I	CCNGG	1 cut(s)	110
Mva1269I	GAATGC	2 cut(s)	311, 424
MvaI	CCWGG	1 cut(s)	110
MwoI	GCNNNNNNNGC	3 cut(s)	105, 1007, 1058
NcoI	CCATGG	1 cut(s)	554
NdeI	CATATG	1 cut(s)	280
NdeII	GATC	7 cut(s)	231, 471, 572, 631, 844, 1208, 1263
NlaIV	GGNNCC	8 cut(s)	430, 538, 539, 925, 940, 1135, 1210, 1348
NmuCI	GTSAC	1 cut(s)	889
NsiI	ATGCAT	1 cut(s)	424
NspI	RCATGY	2 cut(s)	705, 973
PaeI	GCATGC	2 cut(s)	705, 973
PceI	AGGCCT	1 cut(s)	1288
PctI	GAATGC	2 cut(s)	311, 424
PdmI	GAANNNNTTC	1 cut(s)	1351
PfeI	GAWTC	7 cut(s)	56, 290, 550, 757, 1088, 1153, 1378
PkrI	GCNGC	2 cut(s)	98, 451
PleI	GAGTC	3 cut(s)	161, 211, 1383
PpsI	GAGTC	3 cut(s)	161, 211, 1383
PpuMI	RGGWCCY	1 cut(s)	537
Psp5II	RGGWCCY	1 cut(s)	537
Psp6I	CCWGG	1 cut(s)	108
PspGI	CCWGG	1 cut(s)	108
PspN4I	GGNNCC	8 cut(s)	430, 538, 539, 925, 940, 1135, 1210, 1348
PspPI	GGNCC	6 cut(s)	481, 537, 558, 938, 1008, 1297
PspPPI	RGGWCCY	1 cut(s)	537
PsrI	GAACNNNNNNTAC	2 cut(s)	1117, 1149
PstI	CTGCAG	1 cut(s)	101
PstNI	CAGNNNCTG	1 cut(s)	583
PsuI	RGATCY	6 cut(s)	471, 572, 631, 844, 1208, 1263
PvuII	CAGCTG	1 cut(s)	1069
RsaI	GTAC	1 cut(s)	1126
RsaNI	GTAC	1 cut(s)	1125
RseI	CAYNNNNRTG	1 cut(s)	1025
SalI	GTCGAC	1 cut(s)	164
SaqAI	TTAA	1 cut(s)	317
SatI	GCNGC	2 cut(s)	97, 450
Sau3AI	GATC	7 cut(s)	231, 471, 572, 631, 844, 1208, 1263
Sau96I	GGNCC	6 cut(s)	481, 537, 558, 938, 1008, 1297
SchI	GAGTC	3 cut(s)	161, 212, 1383
ScrFI	CCNGG	1 cut(s)	110
SduI	GDGCHC	2 cut(s)	1020, 1276
SfaNI	GCATC	1 cut(s)	237
SfcI	CTRYAG	1 cut(s)	97
SinI	GGWCC	3 cut(s)	537, 938, 1297
SmiMI	CAYNNNNRTG	1 cut(s)	1025
SmlI	CTYRAG	1 cut(s)	1259
SmoI	CTYRAG	1 cut(s)	1259
SphI	GCATGC	2 cut(s)	705, 973
Sse9I	AATT	3 cut(s)	211, 823, 1046
SseBI	AGGCCT	1 cut(s)	1288
SsiI	CCGC	2 cut(s)	32, 596
SspMI	CTAG	7 cut(s)	51, 92, 362, 374, 446, 911, 1163
StuI	AGGCCT	1 cut(s)	1288
StyD4I	CCNGG	1 cut(s)	108
StyI	CCWWGG	2 cut(s)	554, 861
TaaI	ACNGT	2 cut(s)	1015, 1129
TaiI	ACGT	1 cut(s)	590
TaqI	TCGA	3 cut(s)	147, 165, 569
TasI	AATT	3 cut(s)	211, 823, 1046
TfiI	GAWTC	7 cut(s)	56, 290, 550, 757, 1088, 1153, 1378
Tru1I	TTAA	1 cut(s)	317
Tru9I	TTAA	1 cut(s)	317
TscAI	CASTG	5 cut(s)	106, 702, 1020, 1210, 1399
TseFI	GTSAC	1 cut(s)	889
TseI	GCWGC	2 cut(s)	96, 449
Tsp45I	GTSAC	1 cut(s)	889
TspDTI	ATGAA	6 cut(s)	102, 448, 466, 681, 854, 907
TspRI	CASTG	5 cut(s)	106, 702, 1020, 1210, 1399
VpaK11BI	GGWCC	3 cut(s)	537, 938, 1297
XapI	RAATTY	1 cut(s)	1046
XceI	RCATGY	2 cut(s)	705, 973
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1039
XmiI	GTMKAC	2 cut(s)	165, 742
XmnI	GAANNNNTTC	1 cut(s)	1351
XspI	CTAG	7 cut(s)	51, 92, 362, 374, 446, 911, 1163
Zsp2I	ATGCAT	1 cut(s)	424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.