MD13G1279400.v1.1

Amino acid transporter

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Reverse (-)
39331671 .. 39334001
2331 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1279400.v1.1.491

Sequence Viewer

Length: 1563 bp
ATGTGGAACAAATTGTTTGGAAAATCAAAATCAAACTGCCTCCCACACCAAAATCAAGTTATTGTGAGCGATGCATTGCGGCGTGCGAAGTTGGCTTTGCAACAGCTGAGCTGCAATGTATGTCTGGAGGAAAACAAAGTTTGTAAGTGCGACCAATGCTTTGAGAGCTGCAAGAGAGTCGCGGGTGCTGATGAGCACCATGCAGAGGCCAACAATTCTGTTACTCATTCTGTGATCAACATGACAGGGATGCTCATAGCGTTTAATATGTTACTATCAACTGTGATTTTAGAAAATTTATCAAATACAAACATATTAGTGGCTCGACTAAAAATATTACCGACCAAAAAAAAAAACAAAAAGACTTCAACAAATATCGTAAATAATTACTTTTTGCATGCTTTTTGTGTTGCAGGTTTGGGACAGTTATCAACTCCATATGCCTTAGAAACTGGGGGTTGGTCTTCTGCATTCCTATTAATAGGACTTGGGATAATATGTGCATATTGTTCTCATCTCCTTGGAAAATGTCTTGACAAACATCCCAAGTCAAGAACCTACACAGATATTGGATACAACGCATTTGGATCCAAAGGAAAAATTCTAGCAGCATACTTCATTTACATGGAGATCTTCATGGCTCTTGTATCCTACACCATCTCTTTGCATGACAATCTAGCCACAGTGTTCCCCGGGATCCAACTCAAGGTTTCGTGGGCTAAGTTACCAAAATCTCAGCTCTTAACCTTCATCGCCATCTTGGTAGCTCTCCCCAGTCTTTGGTTGAGAGATCTCTCTTCTATATCTTTCCTTTCCTTCGGTGGTGTTCTCATGTCACTCGTCATTTTTATATCAGTGGCATGCACCGCCATTTTTGGAGGGGTGAAATCGAACCACACCATACCAGCCCTCCAGATTCATAACATTCCTGCAATATCTGGCCTTTGTATCTTCAGCTTTGCAGGACATATTGTTTTCCCCAACTTATACAAGGCCATGAAAGACCCATCCAAGTTCACCAAGGTATCAATAATAAGCTTCACTTTAGTGACAATGCTTTACACATCCCTAGCATTCATGGGAGCCAAGTTGTTTGGTCCTCAGGTGAATCCTCAAATCACTCTAAGCATGCCTCCACATCTTATTGTGACAAAGATTGCTTTGTGGGCAACTGTGCTGACACCAATGACCAAATATGCTCTTGAATTTGCACCGATGGCTATCCAGCTTGAGCATAACCTTCCTCAATCTTTGAGTTCCAGAACAAAGTTGCTCATCCGGGGCAGCATTGGTTCAGTGCTACTTCTATTGATTCTAGTACTAGCTCTCTCTGTCCCATATTTTGAGTATGTTCTCAGCCTCACTGGATCGCTTGTAAGTATTGGCATTTGTGTCATTTTCCCTTGTGCCTTCTACCTCAAGATATGCTGGGGTCAAATTTCAAGGCCTCTCCTGGTCCTCAACCTCACTCTAATTGCATTTGGCCCCCTCCTTGGTACAGTTGGAACCATTTCCTCATCAAAGTTGCTCCTAATACACCTCAGCAGAGCTCACTCAGCCTGA

Protein Analysis

521

Amino Acids

56.84

Weight (kDa)

9.45

Isoelectric Point (pI)

35.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 137 - 504 1.9e-60 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014378)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G16740
fragaria_vesca FvH4_4g12300
malus_domestica MD04G1027800.v1.1 MD13G1279400.v1.1
prunus_persica Prupe.1G177200_v2.0.a1
pyrus_communis pycom04g02440 pycom13g29390
rosa_chinensis RchiOBHm_Chr4g0410371
rosa_laevigata RLG00000008434
rosa_multiflora Rmu_sc0002111.1_g000022
rosa_roxburghii Rroxscaffold_5G00355180
rosa_rugosa Rorug04G0102200
rosa_samantha Rh4AG160300 Rh4BG159300 Rh4CG172400 Rh4DG155200
rosa_wichuraiana Rw4G013360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 404
AccB7I CCANNNNNTGG 1 cut(s) 780
AccII CGCG 1 cut(s) 182
AciI CCGC 3 cut(s) 79, 182, 867
AclWI GGATC 5 cut(s) 582, 595, 691, 704, 1375
AcsI RAATTY 4 cut(s) 295, 600, 1205, 1437
AcuI CTGAAG 1 cut(s) 937
AfaI GTAC 2 cut(s) 1320, 1498
AfiI CCNNNNNNNGG 4 cut(s) 205, 706, 780, 1493
AgsI TTSAA 3 cut(s) 369, 1205, 1443
AjnI CCWGG 1 cut(s) 1452
AleI CACNNNNGTG 1 cut(s) 1046
Alw21I GWGCWC 2 cut(s) 198, 1552
AlwI GGATC 5 cut(s) 582, 595, 691, 704, 1375
Ama87I CYCGRG 1 cut(s) 692
AoxI GGCC 5 cut(s) 207, 940, 993, 1445, 1483
ApeKI GCWGC 4 cut(s) 111, 168, 608, 1284
ApoI RAATTY 4 cut(s) 295, 600, 1205, 1437
ArsI GACNNNNNNTTYG 2 cut(s) 143, 175
AseI ATTAAT 1 cut(s) 479
Asp700I GAANNNNTTC 1 cut(s) 1510
AspS9I GGNCC 3 cut(s) 1097, 1456, 1484
AsuC2I CCSGG 3 cut(s) 693, 694, 1280
AsuHPI GGTGA 3 cut(s) 895, 1009, 1117
AvaI CYCGRG 1 cut(s) 692
AvaII GGWCC 2 cut(s) 1097, 1456
AxyI CCTNAGG 1 cut(s) 1101
BaeI ACNNNNGTAYC 2 cut(s) 1008, 1041
BamHI GGATCC 2 cut(s) 587, 696
BanII GRGCYC 1 cut(s) 1552
BbsI GAAGAC 1 cut(s) 456
Bbv12I GWGCWC 2 cut(s) 198, 1552
BbvCI CCTCAGC 1 cut(s) 1541
BbvI GCAGC 4 cut(s) 98, 155, 620, 1296
BccI CCATC 4 cut(s) 665, 764, 1015, 1210
BcgI CGANNNNNNTGC 2 cut(s) 160, 194
BciT130I CCWGG 1 cut(s) 1454
BciVI GTATCC 2 cut(s) 566, 658
BclI TGATCA 1 cut(s) 234
BcnI CCSGG 3 cut(s) 693, 694, 1280
BfaI CTAG 5 cut(s) 605, 677, 1070, 1316, 1322
BfuAI ACCTGC 1 cut(s) 404
BfuI GTATCC 2 cut(s) 566, 658
BglII AGATCT 2 cut(s) 630, 790
BisI GCNGC 5 cut(s) 80, 112, 169, 609, 1285
BlpI GCTNAGC 1 cut(s) 107
BlsI GCNGC 5 cut(s) 81, 113, 170, 610, 1286
BmcAI AGTACT 1 cut(s) 1320
Bme1390I CCNGG 4 cut(s) 693, 694, 1280, 1454
Bme18I GGWCC 2 cut(s) 1097, 1456
BmeT110I CYCGRG 1 cut(s) 692
BmgT120I GGNCC 3 cut(s) 1097, 1456, 1484
BmiI GGNNCC 5 cut(s) 589, 698, 1084, 1486, 1507
BmrFI CCNGG 4 cut(s) 693, 694, 1280, 1454
BmrI ACTGGG 2 cut(s) 462, 768
BmsI GCATC 2 cut(s) 61, 240
BmuI ACTGGG 2 cut(s) 462, 768
BpiI GAAGAC 1 cut(s) 456
BpmI CTGGAG 2 cut(s) 146, 896
Bpu10I CCTNAGC 1 cut(s) 1541
Bpu1102I GCTNAGC 1 cut(s) 107
BpuEI CTTGAG 3 cut(s) 689, 1250, 1403
BpuMI CCSGG 3 cut(s) 693, 694, 1280
BsaBI GATNNNNATC 1 cut(s) 1220
BsaJI CCNNGG 6 cut(s) 520, 691, 692, 1020, 1279, 1492
BsaXI ACNNNNNCTCC 2 cut(s) 894, 924
Bsc4I CCNNNNNNNGG 4 cut(s) 205, 706, 780, 1493
Bse1I ACTGG 3 cut(s) 457, 774, 1369
Bse21I CCTNAGG 1 cut(s) 1101
Bse3DI GCAATG 2 cut(s) 74, 121
Bse8I GATNNNNATC 1 cut(s) 1220
BseBI CCWGG 1 cut(s) 1454
BseDI CCNNGG 6 cut(s) 520, 691, 692, 1020, 1279, 1492
BseGI GGATG 5 cut(s) 255, 541, 1007, 1064, 1275
BseJI GATNNNNATC 1 cut(s) 1220
BseLI CCNNNNNNNGG 4 cut(s) 205, 706, 780, 1493
BseMI GCAATG 2 cut(s) 74, 121
BseMII CTCAG 5 cut(s) 98, 749, 1115, 1369, 1555
BseNI ACTGG 3 cut(s) 457, 774, 1369
BseXI GCAGC 4 cut(s) 98, 155, 620, 1296
BseYI CCCAGC 1 cut(s) 1428
Bsh1236I CGCG 1 cut(s) 182
BshFI GGCC 5 cut(s) 209, 942, 995, 1447, 1485
BsiHKAI GWGCWC 2 cut(s) 198, 1552
BsiHKCI CYCGRG 1 cut(s) 692
BsiSI CCGG 2 cut(s) 693, 1279
BslFI GGGAC 2 cut(s) 435, 1319
BslI CCNNNNNNNGG 4 cut(s) 205, 706, 780, 1493
BsmFI GGGAC 2 cut(s) 435, 1319
BsmI GAATGC 2 cut(s) 470, 1073
BsnI GGCC 5 cut(s) 209, 942, 995, 1447, 1485
BsoBI CYCGRG 1 cut(s) 692
Bsp1286I GDGCHC 2 cut(s) 198, 1552
Bsp143I GATC 6 cut(s) 234, 587, 630, 696, 790, 1367
Bsp1720I GCTNAGC 1 cut(s) 107
BspACI CCGC 3 cut(s) 79, 182, 867
BspANI GGCC 5 cut(s) 209, 942, 995, 1447, 1485
BspCNI CTCAG 5 cut(s) 99, 748, 1114, 1368, 1554
BspFNI CGCG 1 cut(s) 182
BspLI GGNNCC 5 cut(s) 589, 698, 1084, 1486, 1507
BspMI ACCTGC 1 cut(s) 404
BspPI GGATC 5 cut(s) 582, 595, 691, 704, 1375
BsrDI GCAATG 2 cut(s) 74, 121
BsrI ACTGG 3 cut(s) 457, 774, 1369
BssECI CCNNGG 6 cut(s) 520, 691, 692, 1020, 1279, 1492
BssMI GATC 6 cut(s) 234, 587, 630, 696, 790, 1367
BssT1I CCWWGG 3 cut(s) 520, 1020, 1492
Bst2UI CCWGG 1 cut(s) 1454
Bst4CI ACNGT 5 cut(s) 283, 426, 685, 1174, 1501
Bst6I CTCTTC 1 cut(s) 802
BstC8I GCNNGC 4 cut(s) 84, 399, 862, 1130
BstDEI CTNAG 9 cut(s) 107, 445, 720, 735, 1101, 1124, 1355, 1541, 1555
BstF5I GGATG 5 cut(s) 255, 541, 1007, 1064, 1275
BstFNI CGCG 1 cut(s) 182
BstKTI GATC 6 cut(s) 237, 590, 633, 699, 793, 1370
BstMBI GATC 6 cut(s) 234, 587, 630, 696, 790, 1367
BstMWI GCNNNNNNNGC 7 cut(s) 92, 156, 165, 866, 1166, 1217, 1556
BstNI CCWGG 1 cut(s) 1454
BstNSI RCATGY 3 cut(s) 401, 864, 1132
BstSCI CCNGG 4 cut(s) 691, 692, 1278, 1452
BstUI CGCG 1 cut(s) 182
BstV1I GCAGC 4 cut(s) 98, 155, 620, 1296
BstV2I GAAGAC 1 cut(s) 456
BstX2I RGATCY 4 cut(s) 587, 630, 696, 790
BstYI RGATCY 4 cut(s) 587, 630, 696, 790
Bsu36I CCTNAGG 1 cut(s) 1101
BsuI GTATCC 2 cut(s) 566, 658
BsuRI GGCC 5 cut(s) 209, 942, 995, 1447, 1485
BtgZI GCGATG 2 cut(s) 84, 736
BtsCI GGATG 5 cut(s) 255, 541, 1007, 1064, 1275
BtsIMutI CAGTG 4 cut(s) 690, 861, 1302, 1362
BveI ACCTGC 1 cut(s) 404
Cac8I GCNNGC 4 cut(s) 84, 399, 862, 1130
Cfr13I GGNCC 3 cut(s) 1097, 1456, 1484
Cfr9I CCCGGG 1 cut(s) 692
Csp6I GTAC 2 cut(s) 1319, 1497
CviQI GTAC 2 cut(s) 1319, 1497
DdeI CTNAG 9 cut(s) 107, 445, 720, 735, 1101, 1124, 1355, 1541, 1555
DpnI GATC 6 cut(s) 236, 589, 632, 698, 792, 1369
DpnII GATC 6 cut(s) 234, 587, 630, 696, 790, 1367
Eam1104I CTCTTC 1 cut(s) 802
EarI CTCTTC 1 cut(s) 802
Ecl136II GAGCTC 1 cut(s) 1550
Eco130I CCWWGG 3 cut(s) 520, 1020, 1492
Eco147I AGGCCT 1 cut(s) 1447
Eco24I GRGCYC 1 cut(s) 1552
Eco47I GGWCC 2 cut(s) 1097, 1456
Eco53kI GAGCTC 1 cut(s) 1550
Eco57I CTGAAG 1 cut(s) 937
Eco81I CCTNAGG 1 cut(s) 1101
Eco88I CYCGRG 1 cut(s) 692
EcoICRI GAGCTC 1 cut(s) 1550
EcoRII CCWGG 1 cut(s) 1452
EcoT14I CCWWGG 3 cut(s) 520, 1020, 1492
EcoT22I ATGCAT 1 cut(s) 76
EcoT38I GRGCYC 1 cut(s) 1552
ErhI CCWWGG 3 cut(s) 520, 1020, 1492
FalI AAGNNNNNCTT 2 cut(s) 1027, 1059
FaqI GGGAC 2 cut(s) 435, 1319
FauI CCCGC 1 cut(s) 175
FauNDI CATATG 1 cut(s) 439
FbaI TGATCA 1 cut(s) 234
Fnu4HI GCNGC 5 cut(s) 80, 112, 169, 609, 1285
FokI GGATG 5 cut(s) 262, 528, 994, 1051, 1262
FriOI GRGCYC 1 cut(s) 1552
Fsp4HI GCNGC 5 cut(s) 80, 112, 169, 609, 1285
FspBI CTAG 5 cut(s) 605, 677, 1070, 1316, 1322
GluI GCNGC 5 cut(s) 80, 112, 169, 609, 1285
GsaI CCCAGC 1 cut(s) 1432
GsuI CTGGAG 2 cut(s) 146, 896
HaeIII GGCC 5 cut(s) 209, 942, 995, 1447, 1485
HapII CCGG 2 cut(s) 693, 1279
HindIII AAGCTT 1 cut(s) 1036
HinfI GANTC 4 cut(s) 177, 916, 1108, 1312
HpaII CCGG 2 cut(s) 693, 1279
HphI GGTGA 3 cut(s) 895, 1009, 1117
Hpy166II GTNNAC 1 cut(s) 1017
Hpy188III TCNNGA 7 cut(s) 125, 533, 552, 913, 1202, 1260, 1420
Hpy8I GTNNAC 1 cut(s) 1017
HpyAV CCTTC 4 cut(s) 757, 826, 1250, 1420
HpyCH4III ACNGT 5 cut(s) 283, 426, 685, 1174, 1501
HpyF10VI GCNNNNNNNGC 7 cut(s) 92, 156, 165, 866, 1166, 1217, 1556
HpyF3I CTNAG 9 cut(s) 107, 445, 720, 735, 1101, 1124, 1355, 1541, 1555
Ksp22I TGATCA 1 cut(s) 234
Kzo9I GATC 6 cut(s) 234, 587, 630, 696, 790, 1367
LmnI GCTCC 2 cut(s) 1082, 1533
Lsp1109I GCAGC 4 cut(s) 98, 155, 620, 1296
LweI GCATC 2 cut(s) 61, 240
MaeI CTAG 5 cut(s) 605, 677, 1070, 1316, 1322
MaeIII GTNAC 6 cut(s) 220, 270, 723, 834, 1048, 1147
MalI GATC 6 cut(s) 236, 589, 632, 698, 792, 1369
MboI GATC 6 cut(s) 234, 587, 630, 696, 790, 1367
MboII GAAGA 4 cut(s) 456, 625, 789, 943
MflI RGATCY 4 cut(s) 587, 630, 696, 790
MhlI GDGCHC 2 cut(s) 198, 1552
MluCI AATT 8 cut(s) 11, 214, 295, 385, 600, 1205, 1437, 1473
MlyI GAGTC 1 cut(s) 186
MmeI TCCRAC 2 cut(s) 724, 1483
Mph1103I ATGCAT 1 cut(s) 76
MroXI GAANNNNTTC 1 cut(s) 1510
MseI TTAA 3 cut(s) 264, 479, 743
MslI CAYNNNNRTG 3 cut(s) 317, 623, 1046
MspA1I CMGCKG 1 cut(s) 106
MspI CCGG 2 cut(s) 693, 1279
MspR9I CCNGG 4 cut(s) 693, 694, 1280, 1454
Mva1269I GAATGC 2 cut(s) 470, 1073
MvaI CCWGG 1 cut(s) 1454
MvnI CGCG 1 cut(s) 182
MwoI GCNNNNNNNGC 7 cut(s) 92, 156, 165, 866, 1166, 1217, 1556
NciI CCSGG 3 cut(s) 693, 694, 1280
NdeI CATATG 1 cut(s) 439
NdeII GATC 6 cut(s) 234, 587, 630, 696, 790, 1367
NlaIV GGNNCC 5 cut(s) 589, 698, 1084, 1486, 1507
NmuCI GTSAC 3 cut(s) 834, 1048, 1147
NsiI ATGCAT 1 cut(s) 76
NspI RCATGY 3 cut(s) 401, 864, 1132
OliI CACNNNNGTG 1 cut(s) 1046
PaeI GCATGC 3 cut(s) 401, 864, 1132
PceI AGGCCT 1 cut(s) 1447
PctI GAATGC 2 cut(s) 470, 1073
PdmI GAANNNNTTC 1 cut(s) 1510
PfeI GAWTC 3 cut(s) 916, 1108, 1312
PflMI CCANNNNNTGG 1 cut(s) 780
PkrI GCNGC 5 cut(s) 81, 113, 170, 610, 1286
PleI GAGTC 1 cut(s) 185
PpsI GAGTC 1 cut(s) 185
PshBI ATTAAT 1 cut(s) 479
Psp124BI GAGCTC 1 cut(s) 1552
Psp6I CCWGG 1 cut(s) 1452
PspFI CCCAGC 1 cut(s) 1428
PspGI CCWGG 1 cut(s) 1452
PspN4I GGNNCC 5 cut(s) 589, 698, 1084, 1486, 1507
PspPI GGNCC 3 cut(s) 1097, 1456, 1484
PsuI RGATCY 4 cut(s) 587, 630, 696, 790
PvuII CAGCTG 1 cut(s) 106
RsaI GTAC 2 cut(s) 1320, 1498
RsaNI GTAC 2 cut(s) 1319, 1497
RseI CAYNNNNRTG 3 cut(s) 317, 623, 1046
SacI GAGCTC 1 cut(s) 1552
SaqAI TTAA 3 cut(s) 264, 479, 743
SatI GCNGC 5 cut(s) 80, 112, 169, 609, 1285
Sau3AI GATC 6 cut(s) 234, 587, 630, 696, 790, 1367
Sau96I GGNCC 3 cut(s) 1097, 1456, 1484
ScaI AGTACT 1 cut(s) 1320
SchI GAGTC 1 cut(s) 186
ScrFI CCNGG 4 cut(s) 693, 694, 1280, 1454
SduI GDGCHC 2 cut(s) 198, 1552
SfaNI GCATC 2 cut(s) 61, 240
SinI GGWCC 2 cut(s) 1097, 1456
SmaI CCCGGG 1 cut(s) 694
SmiMI CAYNNNNRTG 3 cut(s) 317, 623, 1046
SmlI CTYRAG 3 cut(s) 704, 1229, 1418
SmoI CTYRAG 3 cut(s) 704, 1229, 1418
SphI GCATGC 3 cut(s) 401, 864, 1132
Sse9I AATT 8 cut(s) 11, 214, 295, 385, 600, 1205, 1437, 1473
SseBI AGGCCT 1 cut(s) 1447
SsiI CCGC 3 cut(s) 79, 182, 867
SspI AATATT 1 cut(s) 336
SspMI CTAG 5 cut(s) 605, 677, 1070, 1316, 1322
SstI GAGCTC 1 cut(s) 1552
StuI AGGCCT 1 cut(s) 1447
StyD4I CCNGG 4 cut(s) 691, 692, 1278, 1452
StyI CCWWGG 3 cut(s) 520, 1020, 1492
TaaI ACNGT 5 cut(s) 283, 426, 685, 1174, 1501
TaqI TCGA 2 cut(s) 325, 890
TasI AATT 8 cut(s) 11, 214, 295, 385, 600, 1205, 1437, 1473
TatI WGTACW 1 cut(s) 1318
TauI GCSGC 1 cut(s) 82
TfiI GAWTC 3 cut(s) 916, 1108, 1312
Tru1I TTAA 3 cut(s) 264, 479, 743
Tru9I TTAA 3 cut(s) 264, 479, 743
TscAI CASTG 4 cut(s) 690, 861, 1302, 1369
TseFI GTSAC 3 cut(s) 834, 1048, 1147
TseI GCWGC 4 cut(s) 111, 168, 608, 1284
Tsp45I GTSAC 3 cut(s) 834, 1048, 1147
TspDTI ATGAA 6 cut(s) 607, 625, 739, 908, 1013, 1066
TspMI CCCGGG 1 cut(s) 692
TspRI CASTG 4 cut(s) 690, 861, 1302, 1369
Van91I CCANNNNNTGG 1 cut(s) 780
VpaK11BI GGWCC 2 cut(s) 1097, 1456
VspI ATTAAT 1 cut(s) 479
XapI RAATTY 4 cut(s) 295, 600, 1205, 1437
XceI RCATGY 3 cut(s) 401, 864, 1132
XmaI CCCGGG 1 cut(s) 692
XmnI GAANNNNTTC 1 cut(s) 1510
XspI CTAG 5 cut(s) 605, 677, 1070, 1316, 1322
ZrmI AGTACT 1 cut(s) 1320
Zsp2I ATGCAT 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.