Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0016306

Physical Location & Seq

Genomic Coordinates Reverse (-)

18963469 .. 18966441

Gene Structure 2973 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g15320.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGGTGATATTTCTTATGCCAATGGCAATGGGAATGTGAATGGGAATGGGAATGGAGTAGGAGTGAATGGGAATGCAGTGAATGGAAATGGAATGAATAGAAAAGGCCATCCAGTACTGAATGGCTACCGGAAGAGCTGCTGGTATGAGGAAGAAATCGAGGAAAACTTAAGATGGAGCTTTGCTCTTAATAGTATTCTGCATACAGGATCTACTCCATACCAAGACATTGCTTTGTTGGACACAAAGCCCTTTGGAAAGGCTTTGGTCATTGATGGAAAGCTTCAAAGTGCTGAGACTGATGAATTTATCTACCATGAATGTCTTTGCCATCCCGCACTTCTTCATCATGCAAATCCAACCAACATCTTCATCATGGGAGGAGGTGAAGGCTCCACTGCCAGAGAACTTCTGAGACACAAGACTGTGGAGAAGGTTGTCATGTGTGACATTGATGAGGAGGTGGTGGACTTCTGCAAATCATATTTGGATGTAAACAAAGAAGCTTTCTGTGATGCAAGACTCAAGCTCATCATCAATGATGCCAGGGCTGAGCTAGAACACACAGAAAACCACTATGATGTGATCATTGGAGATCTTGCAGACCCAATAGAAGGAGGACCTTGTTATAAACTCTACACCAAATCTTTCTATGAGTTAATTGTCAAACCTAGACTCACCAAGGATGGCATTTTTGTCACACAGGCTGGTCCTGCTGGAATTTTCAGCCACACAGAAGTTTTCTCTTGCATCTACAATACTCTAAGGCAGGTCTTCAAATATGTTGTGCCTTATTCAGCTCATATTCCTTCTTATGCTGATACTTGGGGATGGATCATGGCTTCAGATAACCCATTTGTGCTTAGTGCTGATGAACTAGACCTGAAAACTAAATTGAGGATCAATGGGGAGAACAGATACCTAGATGGGAAAACATTTACATCAGCCTCTACCTTGAGCAAAGCCATTCGCAAATCGATGGAAAATGAGACTCATGTATACACAGAAGGAACTGCAAGGTTCATATATGGTCATGGTCATAATAGTGCCCAAAAACACAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0008150 GO:0009888 GO:0009914 GO:0009926 GO:0009987 GO:0010087 GO:0010089 GO:0010487 GO:0010817 GO:0016740 GO:0016765 GO:0016768 GO:0030154 GO:0032502 GO:0044424 GO:0044464 GO:0048759 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0060918 GO:0065007 GO:0065008 GO:1905177

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Spermine_synt_N Spermine_synth

Protein Analysis

355

Amino Acids

39.48

Weight (kDa)

5.75

Isoelectric Point (pI)

28.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Spermine_synt_N	PF17284	48 - 99	4.5e-13	Spermidine synthase tetramerisation domain
Spermine_synth	PF01564	102 - 283	2.4e-46	Spermine/spermidine synthase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016306)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15320 FvH4_4g15320
malus_domestica	MD13G1191500.v1.1 MD16G1191600.v1.1
prunus_persica	Prupe.1G011700_v2.0.a1
pyrus_communis	pycom13g16430 pycom16g16140
rosa_chinensis	RchiOBHm_Chr4g0416531
rosa_laevigata	RLG00000007976
rosa_roxburghii	Rroxscaffold_5G00360410
rosa_rugosa	Rorug04G0142400
rosa_samantha	Rh4AG205000 Rh4BG202700 Rh4DG202200
rosa_wichuraiana	Rw4G017350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	630
Acc36I	ACCTGC	1 cut(s)	760
AccI	GTMKAC	1 cut(s)	999
AciI	CCGC	1 cut(s)	336
AclWI	GGATC	3 cut(s)	217, 842, 908
AcsI	RAATTY	2 cut(s)	305, 720
AcuI	CTGAAG	1 cut(s)	828
AfaI	GTAC	1 cut(s)	117
AfiI	CCNNNNNNNGG	1 cut(s)	614
AflII	CTTAAG	1 cut(s)	169
AgsI	TTSAA	2 cut(s)	287, 778
AjnI	CCWGG	1 cut(s)	545
AluBI	AGCT	7 cut(s)	138, 180, 283, 506, 529, 556, 800
AluI	AGCT	7 cut(s)	138, 180, 283, 506, 529, 556, 800
Alw26I	GTCTC	3 cut(s)	290, 409, 983
AlwI	GGATC	3 cut(s)	217, 842, 908
AoxI	GGCC	1 cut(s)	106
ApeKI	GCWGC	1 cut(s)	138
ApoI	RAATTY	2 cut(s)	305, 720
AspS9I	GGNCC	2 cut(s)	620, 710
AsuHPI	GGTGA	3 cut(s)	17, 398, 670
AvaII	GGWCC	2 cut(s)	620, 710
BaeGI	GKGCMC	1 cut(s)	1051
BbsI	GAAGAC	1 cut(s)	766
BbvI	GCAGC	1 cut(s)	125
BccI	CCATC	8 cut(s)	117, 168, 269, 339, 680, 825, 920, 973
BciT130I	CCWGG	1 cut(s)	547
BclI	TGATCA	1 cut(s)	585
BcoDI	GTCTC	3 cut(s)	290, 409, 983
BfaI	CTAG	4 cut(s)	557, 672, 878, 923
BfrI	CTTAAG	1 cut(s)	169
BfuAI	ACCTGC	1 cut(s)	760
BglII	AGATCT	1 cut(s)	595
BisI	GCNGC	1 cut(s)	139
BlpI	GCTNAGC	1 cut(s)	552
BlsI	GCNGC	1 cut(s)	140
BmcAI	AGTACT	1 cut(s)	117
Bme1390I	CCNGG	1 cut(s)	547
Bme18I	GGWCC	2 cut(s)	620, 710
BmgT120I	GGNCC	2 cut(s)	620, 710
BmiI	GGNNCC	1 cut(s)	394
BmrFI	CCNGG	1 cut(s)	547
BmsI	GCATC	3 cut(s)	505, 532, 759
BpiI	GAAGAC	1 cut(s)	766
BplI	GAGNNNNNCTC	2 cut(s)	169, 201
Bpu1102I	GCTNAGC	1 cut(s)	552
BpuEI	CTTGAG	2 cut(s)	509, 976
Bsa29I	ATCGAT	1 cut(s)	977
BsaJI	CCNNGG	2 cut(s)	546, 681
BsaWI	WCCGGW	1 cut(s)	129
BsaXI	ACNNNNNCTCC	2 cut(s)	48, 78
Bsc4I	CCNNNNNNNGG	1 cut(s)	614
Bse1I	ACTGG	1 cut(s)	113
Bse3DI	GCAATG	2 cut(s)	34, 228
BseBI	CCWGG	1 cut(s)	547
BseCI	ATCGAT	1 cut(s)	977
BseDI	CCNNGG	2 cut(s)	546, 681
BseGI	GGATG	5 cut(s)	109, 331, 496, 691, 836
BseLI	CCNNNNNNNGG	1 cut(s)	614
BseMI	GCAATG	2 cut(s)	34, 228
BseMII	CTCAG	3 cut(s)	285, 404, 543
BseNI	ACTGG	1 cut(s)	113
BseRI	GAGGAG	2 cut(s)	396, 473
BseSI	GKGCMC	1 cut(s)	1051
BseXI	GCAGC	1 cut(s)	125
BshFI	GGCC	1 cut(s)	108
BshVI	ATCGAT	1 cut(s)	977
BsiSI	CCGG	1 cut(s)	130
BslI	CCNNNNNNNGG	1 cut(s)	614
BsmAI	GTCTC	3 cut(s)	290, 409, 983
BsmI	GAATGC	1 cut(s)	79
BsnI	GGCC	1 cut(s)	108
Bsp1286I	GDGCHC	1 cut(s)	1051
Bsp143I	GATC	5 cut(s)	209, 585, 595, 834, 900
Bsp1720I	GCTNAGC	1 cut(s)	552
BspACI	CCGC	1 cut(s)	336
BspANI	GGCC	1 cut(s)	108
BspCNI	CTCAG	3 cut(s)	286, 405, 544
BspDI	ATCGAT	1 cut(s)	977
BspLI	GGNNCC	1 cut(s)	394
BspMI	ACCTGC	1 cut(s)	760
BspPI	GGATC	3 cut(s)	217, 842, 908
BspQI	GCTCTTC	1 cut(s)	128
BspTI	CTTAAG	1 cut(s)	169
BsrDI	GCAATG	2 cut(s)	34, 228
BsrI	ACTGG	1 cut(s)	113
BssECI	CCNNGG	2 cut(s)	546, 681
BssMI	GATC	5 cut(s)	209, 585, 595, 834, 900
BssNAI	GTATAC	1 cut(s)	1000
BssT1I	CCWWGG	1 cut(s)	681
Bst1107I	GTATAC	1 cut(s)	1000
Bst2UI	CCWGG	1 cut(s)	547
Bst4CI	ACNGT	1 cut(s)	427
Bst6I	CTCTTC	1 cut(s)	128
BstAFI	CTTAAG	1 cut(s)	169
BstDEI	CTNAG	5 cut(s)	294, 413, 552, 764, 863
BstF5I	GGATG	5 cut(s)	109, 331, 496, 691, 836
BstKTI	GATC	5 cut(s)	212, 588, 598, 837, 903
BstMAI	GTCTC	3 cut(s)	290, 409, 983
BstMBI	GATC	5 cut(s)	209, 585, 595, 834, 900
BstMWI	GCNNNNNNNGC	1 cut(s)	713
BstNI	CCWGG	1 cut(s)	547
BstSCI	CCNGG	1 cut(s)	545
BstSLI	GKGCMC	1 cut(s)	1051
BstV1I	GCAGC	1 cut(s)	125
BstV2I	GAAGAC	1 cut(s)	766
BstX2I	RGATCY	2 cut(s)	209, 595
BstYI	RGATCY	2 cut(s)	209, 595
BstZ17I	GTATAC	1 cut(s)	1000
Bsu15I	ATCGAT	1 cut(s)	977
BsuRI	GGCC	1 cut(s)	108
BsuTUI	ATCGAT	1 cut(s)	977
BtsCI	GGATG	5 cut(s)	109, 331, 496, 691, 836
BtsI	GCAGTG	2 cut(s)	84, 396
BtsIMutI	CAGTG	2 cut(s)	84, 396
BveI	ACCTGC	1 cut(s)	760
Cfr13I	GGNCC	2 cut(s)	620, 710
ClaI	ATCGAT	1 cut(s)	977
Csp6I	GTAC	1 cut(s)	116
CviAII	CATG	7 cut(s)	317, 350, 376, 442, 838, 995, 1034
CviQI	GTAC	1 cut(s)	116
DdeI	CTNAG	5 cut(s)	294, 413, 552, 764, 863
DpnI	GATC	5 cut(s)	211, 587, 597, 836, 902
DpnII	GATC	5 cut(s)	209, 585, 595, 834, 900
Eam1104I	CTCTTC	1 cut(s)	128
EarI	CTCTTC	1 cut(s)	128
Eco130I	CCWWGG	1 cut(s)	681
Eco47I	GGWCC	2 cut(s)	620, 710
Eco57I	CTGAAG	1 cut(s)	828
EcoO109I	RGGNCCY	1 cut(s)	620
EcoRII	CCWGG	1 cut(s)	545
EcoT14I	CCWWGG	1 cut(s)	681
ErhI	CCWWGG	1 cut(s)	681
FaeI	CATG	7 cut(s)	320, 353, 379, 445, 841, 998, 1037
FatI	CATG	7 cut(s)	316, 349, 375, 441, 837, 994, 1033
FauI	CCCGC	1 cut(s)	343
FbaI	TGATCA	1 cut(s)	585
FblI	GTMKAC	1 cut(s)	999
Fnu4HI	GCNGC	1 cut(s)	139
FokI	GGATG	5 cut(s)	96, 318, 503, 698, 843
Fsp4HI	GCNGC	1 cut(s)	139
FspBI	CTAG	4 cut(s)	557, 672, 878, 923
GluI	GCNGC	1 cut(s)	139
HaeIII	GGCC	1 cut(s)	108
HapII	CCGG	1 cut(s)	130
Hin1II	CATG	7 cut(s)	320, 353, 379, 445, 841, 998, 1037
HindIII	AAGCTT	2 cut(s)	281, 504
HinfI	GANTC	3 cut(s)	522, 675, 991
HpaII	CCGG	1 cut(s)	130
HphI	GGTGA	3 cut(s)	17, 398, 670
Hpy166II	GTNNAC	3 cut(s)	469, 496, 1000
Hpy188I	TCNGA	2 cut(s)	414, 847
Hpy8I	GTNNAC	3 cut(s)	469, 496, 1000
HpyAV	CCTTC	5 cut(s)	383, 427, 608, 819, 1001
HpyCH4III	ACNGT	1 cut(s)	427
HpyCH4V	TGCA	8 cut(s)	77, 202, 353, 477, 518, 602, 750, 1016
HpyF10VI	GCNNNNNNNGC	1 cut(s)	713
HpyF3I	CTNAG	5 cut(s)	294, 413, 552, 764, 863
Hsp92II	CATG	7 cut(s)	320, 353, 379, 445, 841, 998, 1037
Ksp22I	TGATCA	1 cut(s)	585
Kzo9I	GATC	5 cut(s)	209, 585, 595, 834, 900
LguI	GCTCTTC	1 cut(s)	128
LmnI	GCTCC	2 cut(s)	177, 398
Lsp1109I	GCAGC	1 cut(s)	125
LweI	GCATC	3 cut(s)	505, 532, 759
MaeI	CTAG	4 cut(s)	557, 672, 878, 923
MaeIII	GTNAC	2 cut(s)	446, 697
MalI	GATC	5 cut(s)	211, 587, 597, 836, 902
MboI	GATC	5 cut(s)	209, 585, 595, 834, 900
MboII	GAAGA	5 cut(s)	145, 164, 335, 361, 766
MflI	RGATCY	2 cut(s)	209, 595
MhlI	GDGCHC	1 cut(s)	1051
MluCI	AATT	5 cut(s)	305, 660, 720, 893, 1060
MlyI	GAGTC	3 cut(s)	516, 669, 985
MmeI	TCCRAC	2 cut(s)	219, 383
MnlI	CCTC	9 cut(s)	142, 154, 374, 377, 451, 454, 611, 891, 958
MseI	TTAA	4 cut(s)	170, 189, 659, 1063
MslI	CAYNNNNRTG	2 cut(s)	579, 1044
MspCI	CTTAAG	1 cut(s)	169
MspI	CCGG	1 cut(s)	130
MspR9I	CCNGG	1 cut(s)	547
Mva1269I	GAATGC	1 cut(s)	79
MvaI	CCWGG	1 cut(s)	547
MwoI	GCNNNNNNNGC	1 cut(s)	713
NdeII	GATC	5 cut(s)	209, 585, 595, 834, 900
NlaIII	CATG	7 cut(s)	320, 353, 379, 445, 841, 998, 1037
NlaIV	GGNNCC	1 cut(s)	394
NmuCI	GTSAC	2 cut(s)	446, 697
PciSI	GCTCTTC	1 cut(s)	128
PctI	GAATGC	1 cut(s)	79
PkrI	GCNGC	1 cut(s)	140
PleI	GAGTC	3 cut(s)	516, 669, 985
PpsI	GAGTC	3 cut(s)	516, 669, 985
PpuMI	RGGWCCY	1 cut(s)	620
PsiI	TTATAA	1 cut(s)	630
Psp5II	RGGWCCY	1 cut(s)	620
Psp6I	CCWGG	1 cut(s)	545
PspGI	CCWGG	1 cut(s)	545
PspN4I	GGNNCC	1 cut(s)	394
PspPI	GGNCC	2 cut(s)	620, 710
PspPPI	RGGWCCY	1 cut(s)	620
PsuI	RGATCY	2 cut(s)	209, 595
RsaI	GTAC	1 cut(s)	117
RsaNI	GTAC	1 cut(s)	116
RseI	CAYNNNNRTG	2 cut(s)	579, 1044
SapI	GCTCTTC	1 cut(s)	128
SaqAI	TTAA	4 cut(s)	170, 189, 659, 1063
SatI	GCNGC	1 cut(s)	139
Sau3AI	GATC	5 cut(s)	209, 585, 595, 834, 900
Sau96I	GGNCC	2 cut(s)	620, 710
ScaI	AGTACT	1 cut(s)	117
SchI	GAGTC	3 cut(s)	516, 669, 985
ScrFI	CCNGG	1 cut(s)	547
SduI	GDGCHC	1 cut(s)	1051
SfaNI	GCATC	3 cut(s)	505, 532, 759
SinI	GGWCC	2 cut(s)	620, 710
SmiMI	CAYNNNNRTG	2 cut(s)	579, 1044
SmlI	CTYRAG	3 cut(s)	169, 524, 955
SmoI	CTYRAG	3 cut(s)	169, 524, 955
Sse9I	AATT	5 cut(s)	305, 660, 720, 893, 1060
SsiI	CCGC	1 cut(s)	336
SspMI	CTAG	4 cut(s)	557, 672, 878, 923
StyD4I	CCNGG	1 cut(s)	545
StyI	CCWWGG	1 cut(s)	681
TaaI	ACNGT	1 cut(s)	427
TaqI	TCGA	2 cut(s)	159, 977
TasI	AATT	5 cut(s)	305, 660, 720, 893, 1060
TatI	WGTACW	1 cut(s)	115
Tru1I	TTAA	4 cut(s)	170, 189, 659, 1063
Tru9I	TTAA	4 cut(s)	170, 189, 659, 1063
TscAI	CASTG	2 cut(s)	84, 403
TseFI	GTSAC	2 cut(s)	446, 697
TseI	GCWGC	1 cut(s)	138
Tsp45I	GTSAC	2 cut(s)	446, 697
TspDTI	ATGAA	7 cut(s)	110, 318, 333, 335, 361, 888, 1012
TspRI	CASTG	2 cut(s)	84, 403
Vha464I	CTTAAG	1 cut(s)	169
VpaK11BI	GGWCC	2 cut(s)	620, 710
XapI	RAATTY	2 cut(s)	305, 720
XmiI	GTMKAC	1 cut(s)	999
XspI	CTAG	4 cut(s)	557, 672, 878, 923
ZrmI	AGTACT	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.