Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0016306

Physical Location & Seq

Genomic Coordinates Reverse (-)

23754390 .. 23757216

Gene Structure 2827 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007976

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGGTGACATTACTTATTCCAATAGCAATGGAAATGGAGTGAATGGGAATGGGAATGGGTATGTAGTGAATGGAGTAAATGGAAATGGAAATGGAGTGAATGGAAAATTCCATCCAGTACTGAATGGCTACCGGAAGAGCTGCTGGTACGAGGAAGAAATCGAAGAAAACTTAAGATGGAGCTTTGCTCTTAATAGTATTCTGCATACAGGAGCTACTCCATTCCAAGACATTGCTTTGTTGGACACAAAGCCCTTTGGAAAGGCTTTGGTCATTGATGGAAAGCTTCAAAGTGCTGAGACTGATGAATTTATCTACCATGAATGTCTTTGCCATCCAGCACTTCTTCATCATCCAAATCCAACCAACATCTTCATCATGGGAGGAGGCGAAGGTTCCACTGCCAGAGAACTTCTGAGACACAAGACTGTGGAGAAGGTTGTCATGTGTGACATTGATGAGGAGGTGGTGGAGTTCTGCAAATCCTTTTTGGATGTAAACAGAGAAGCTTTCTGTGATGCAAGACTCAAGCTCATCATCAATGATGCCAGGGCTGAGCTAGAACACACAGAAAACCACTATGATGTGATCATTGGAGATCTTGCAGACCCGATAGAAGGAGGGCCATGTTATAAACTCTACACCAAATCTTTCTATGAGTTGATTGTCAAACCTAGACTCACCAAGGATGGCATTTTTGTCACACAGAAATCTATTTCCCTTTTTGCAATTATATTTCACTACCCTTTCTTATCAGCTCTTTGTTTTGCAGATGTTGTGCCTTATTCAGCTCATATTCCTTCTTATGCCGATACTTGGGGATGGATCATGGCTTCAGATACCCCATTTGTGCTTAGTGCTGATGAACTAGACATGAGAACTAAACTGAGGATCAATGGGGAGAACAGATACCTAGATGGGAAAACCTTTTCATCAGCCTCTACCTTAAGCAAAGCCGTTCGTAACTCGATGGAAAATGAGACTCATGTATACACTGAAGGAACTGCAAGGTTCATATATGGTCATGGTCATAATAGTGCCCAAAATCACAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0008150 GO:0009888 GO:0009914 GO:0009926 GO:0009987 GO:0010087 GO:0010089 GO:0010487 GO:0010817 GO:0016740 GO:0016765 GO:0016768 GO:0030154 GO:0032502 GO:0044424 GO:0044464 GO:0048759 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0060918 GO:0065007 GO:0065008 GO:1905177

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Spermine_synt_N Spermine_synth

Protein Analysis

352

Amino Acids

39.2

Weight (kDa)

5.42

Isoelectric Point (pI)

28.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Spermine_synt_N	PF17284	49 - 100	1.2e-12	Spermidine synthase tetramerisation domain
Spermine_synth	PF01564	103 - 277	6.2e-41	Spermine/spermidine synthase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016306)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15320 FvH4_4g15320
malus_domestica	MD13G1191500.v1.1 MD16G1191600.v1.1
prunus_persica	Prupe.1G011700_v2.0.a1
pyrus_communis	pycom13g16430 pycom16g16140
rosa_chinensis	RchiOBHm_Chr4g0416531
rosa_laevigata	RLG00000007976
rosa_roxburghii	Rroxscaffold_5G00360410
rosa_rugosa	Rorug04G0142400
rosa_samantha	Rh4AG205000 Rh4BG202700 Rh4DG202200
rosa_wichuraiana	Rw4G017350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	633
AccI	GTMKAC	1 cut(s)	990
AclWI	GGATC	2 cut(s)	833, 899
AcsI	RAATTY	2 cut(s)	107, 308
AcuI	CTGAAG	2 cut(s)	819, 1017
AfaI	GTAC	2 cut(s)	120, 149
AfiI	CCNNNNNNNGG	2 cut(s)	617, 816
AflII	CTTAAG	2 cut(s)	172, 946
AgsI	TTSAA	1 cut(s)	290
AjnI	CCWGG	1 cut(s)	548
AluBI	AGCT	9 cut(s)	141, 183, 215, 286, 509, 532, 559, 758, 791
AluI	AGCT	9 cut(s)	141, 183, 215, 286, 509, 532, 559, 758, 791
Alw26I	GTCTC	3 cut(s)	293, 412, 974
AlwI	GGATC	2 cut(s)	833, 899
AoxI	GGCC	1 cut(s)	623
ApeKI	GCWGC	1 cut(s)	141
ApoI	RAATTY	2 cut(s)	107, 308
AspS9I	GGNCC	1 cut(s)	623
AsuHPI	GGTGA	2 cut(s)	17, 673
BaeGI	GKGCMC	1 cut(s)	1042
BbvI	GCAGC	1 cut(s)	128
BccI	CCATC	8 cut(s)	120, 171, 272, 342, 683, 816, 911, 964
BceAI	ACGGC	1 cut(s)	941
BciT130I	CCWGG	1 cut(s)	550
BclI	TGATCA	1 cut(s)	588
BcoDI	GTCTC	3 cut(s)	293, 412, 974
BfaI	CTAG	4 cut(s)	560, 675, 869, 914
BfrI	CTTAAG	2 cut(s)	172, 946
BglII	AGATCT	1 cut(s)	598
BisI	GCNGC	1 cut(s)	142
BlpI	GCTNAGC	1 cut(s)	555
BlsI	GCNGC	1 cut(s)	143
BmcAI	AGTACT	1 cut(s)	120
Bme1390I	CCNGG	1 cut(s)	550
BmgT120I	GGNCC	1 cut(s)	623
BmiI	GGNNCC	1 cut(s)	397
BmrFI	CCNGG	1 cut(s)	550
BmsI	GCATC	2 cut(s)	508, 535
BplI	GAGNNNNNCTC	2 cut(s)	172, 204
Bpu1102I	GCTNAGC	1 cut(s)	555
BpuEI	CTTGAG	1 cut(s)	512
BsaJI	CCNNGG	2 cut(s)	549, 684
BsaWI	WCCGGW	1 cut(s)	132
Bsc4I	CCNNNNNNNGG	2 cut(s)	617, 816
Bse1I	ACTGG	1 cut(s)	116
Bse3DI	GCAATG	2 cut(s)	34, 231
BseBI	CCWGG	1 cut(s)	550
BseDI	CCNNGG	2 cut(s)	549, 684
BseGI	GGATG	6 cut(s)	112, 334, 352, 499, 694, 827
BseLI	CCNNNNNNNGG	2 cut(s)	617, 816
BseMI	GCAATG	2 cut(s)	34, 231
BseMII	CTCAG	4 cut(s)	288, 407, 546, 878
BseNI	ACTGG	1 cut(s)	116
BseRI	GAGGAG	2 cut(s)	399, 476
BseSI	GKGCMC	1 cut(s)	1042
BseXI	GCAGC	1 cut(s)	128
BshFI	GGCC	1 cut(s)	625
BsiSI	CCGG	1 cut(s)	133
BslI	CCNNNNNNNGG	2 cut(s)	617, 816
BsmAI	GTCTC	3 cut(s)	293, 412, 974
BsnI	GGCC	1 cut(s)	625
Bsp1286I	GDGCHC	1 cut(s)	1042
Bsp143I	GATC	4 cut(s)	588, 598, 825, 891
Bsp1720I	GCTNAGC	1 cut(s)	555
BspANI	GGCC	1 cut(s)	625
BspCNI	CTCAG	4 cut(s)	289, 408, 547, 879
BspLI	GGNNCC	1 cut(s)	397
BspPI	GGATC	2 cut(s)	833, 899
BspQI	GCTCTTC	1 cut(s)	131
BspTI	CTTAAG	2 cut(s)	172, 946
BsrDI	GCAATG	2 cut(s)	34, 231
BsrI	ACTGG	1 cut(s)	116
BssECI	CCNNGG	2 cut(s)	549, 684
BssMI	GATC	4 cut(s)	588, 598, 825, 891
BssNAI	GTATAC	1 cut(s)	991
BssT1I	CCWWGG	1 cut(s)	684
Bst1107I	GTATAC	1 cut(s)	991
Bst2UI	CCWGG	1 cut(s)	550
Bst4CI	ACNGT	1 cut(s)	430
Bst6I	CTCTTC	1 cut(s)	131
BstAFI	CTTAAG	2 cut(s)	172, 946
BstDEI	CTNAG	5 cut(s)	297, 416, 555, 854, 887
BstF5I	GGATG	6 cut(s)	112, 334, 352, 499, 694, 827
BstKTI	GATC	4 cut(s)	591, 601, 828, 894
BstMAI	GTCTC	3 cut(s)	293, 412, 974
BstMBI	GATC	4 cut(s)	588, 598, 825, 891
BstNI	CCWGG	1 cut(s)	550
BstSCI	CCNGG	1 cut(s)	548
BstSLI	GKGCMC	1 cut(s)	1042
BstV1I	GCAGC	1 cut(s)	128
BstX2I	RGATCY	1 cut(s)	598
BstYI	RGATCY	1 cut(s)	598
BstZ17I	GTATAC	1 cut(s)	991
BsuRI	GGCC	1 cut(s)	625
BtsCI	GGATG	6 cut(s)	112, 334, 352, 499, 694, 827
BtsI	GCAGTG	1 cut(s)	399
BtsIMutI	CAGTG	2 cut(s)	399, 993
Cfr13I	GGNCC	1 cut(s)	623
Csp6I	GTAC	2 cut(s)	119, 148
CviAII	CATG	8 cut(s)	320, 379, 445, 627, 829, 874, 986, 1025
CviQI	GTAC	2 cut(s)	119, 148
DdeI	CTNAG	5 cut(s)	297, 416, 555, 854, 887
DpnI	GATC	4 cut(s)	590, 600, 827, 893
DpnII	GATC	4 cut(s)	588, 598, 825, 891
Eam1104I	CTCTTC	1 cut(s)	131
EarI	CTCTTC	1 cut(s)	131
Eco130I	CCWWGG	1 cut(s)	684
Eco57I	CTGAAG	2 cut(s)	819, 1017
EcoRII	CCWGG	1 cut(s)	548
EcoT14I	CCWWGG	1 cut(s)	684
ErhI	CCWWGG	1 cut(s)	684
FaeI	CATG	8 cut(s)	323, 382, 448, 630, 832, 877, 989, 1028
FatI	CATG	8 cut(s)	319, 378, 444, 626, 828, 873, 985, 1024
FbaI	TGATCA	1 cut(s)	588
FblI	GTMKAC	1 cut(s)	990
Fnu4HI	GCNGC	1 cut(s)	142
FokI	GGATG	6 cut(s)	99, 321, 339, 506, 701, 834
Fsp4HI	GCNGC	1 cut(s)	142
FspBI	CTAG	4 cut(s)	560, 675, 869, 914
GluI	GCNGC	1 cut(s)	142
HaeIII	GGCC	1 cut(s)	625
HapII	CCGG	1 cut(s)	133
Hin1II	CATG	8 cut(s)	323, 382, 448, 630, 832, 877, 989, 1028
HindIII	AAGCTT	2 cut(s)	284, 507
HinfI	GANTC	3 cut(s)	525, 678, 982
HpaII	CCGG	1 cut(s)	133
HphI	GGTGA	2 cut(s)	17, 673
Hpy166II	GTNNAC	2 cut(s)	499, 991
Hpy188I	TCNGA	2 cut(s)	417, 838
Hpy8I	GTNNAC	2 cut(s)	499, 991
HpyAV	CCTTC	5 cut(s)	386, 430, 611, 810, 992
HpyCH4III	ACNGT	1 cut(s)	430
HpyCH4V	TGCA	7 cut(s)	205, 480, 521, 605, 728, 770, 1007
HpyF3I	CTNAG	5 cut(s)	297, 416, 555, 854, 887
Hsp92II	CATG	8 cut(s)	323, 382, 448, 630, 832, 877, 989, 1028
Ksp22I	TGATCA	1 cut(s)	588
Kzo9I	GATC	4 cut(s)	588, 598, 825, 891
LguI	GCTCTTC	1 cut(s)	131
LmnI	GCTCC	2 cut(s)	180, 212
LpnPI	CCDG	8 cut(s)	129, 130, 146, 195, 351, 418, 535, 562
Lsp1109I	GCAGC	1 cut(s)	128
LweI	GCATC	2 cut(s)	508, 535
MaeI	CTAG	4 cut(s)	560, 675, 869, 914
MaeIII	GTNAC	4 cut(s)	5, 449, 700, 962
MalI	GATC	4 cut(s)	590, 600, 827, 893
MboI	GATC	4 cut(s)	588, 598, 825, 891
MboII	GAAGA	5 cut(s)	148, 167, 176, 338, 364
MflI	RGATCY	1 cut(s)	598
MhlI	GDGCHC	1 cut(s)	1042
MluCI	AATT	4 cut(s)	107, 308, 729, 1051
MlyI	GAGTC	3 cut(s)	519, 672, 976
MmeI	TCCRAC	2 cut(s)	222, 386
MnlI	CCTC	8 cut(s)	145, 377, 380, 454, 457, 614, 882, 949
MseI	TTAA	4 cut(s)	173, 192, 947, 1054
MslI	CAYNNNNRTG	2 cut(s)	582, 1035
MspCI	CTTAAG	2 cut(s)	172, 946
MspI	CCGG	1 cut(s)	133
MspR9I	CCNGG	1 cut(s)	550
MvaI	CCWGG	1 cut(s)	550
NdeII	GATC	4 cut(s)	588, 598, 825, 891
NlaIII	CATG	8 cut(s)	323, 382, 448, 630, 832, 877, 989, 1028
NlaIV	GGNNCC	1 cut(s)	397
NmuCI	GTSAC	3 cut(s)	5, 449, 700
PciSI	GCTCTTC	1 cut(s)	131
PkrI	GCNGC	1 cut(s)	143
PleI	GAGTC	3 cut(s)	519, 672, 976
PpsI	GAGTC	3 cut(s)	519, 672, 976
PsiI	TTATAA	1 cut(s)	633
Psp6I	CCWGG	1 cut(s)	548
PspGI	CCWGG	1 cut(s)	548
PspN4I	GGNNCC	1 cut(s)	397
PspPI	GGNCC	1 cut(s)	623
PsuI	RGATCY	1 cut(s)	598
RsaI	GTAC	2 cut(s)	120, 149
RsaNI	GTAC	2 cut(s)	119, 148
RseI	CAYNNNNRTG	2 cut(s)	582, 1035
SapI	GCTCTTC	1 cut(s)	131
SaqAI	TTAA	4 cut(s)	173, 192, 947, 1054
SatI	GCNGC	1 cut(s)	142
Sau3AI	GATC	4 cut(s)	588, 598, 825, 891
Sau96I	GGNCC	1 cut(s)	623
ScaI	AGTACT	1 cut(s)	120
SchI	GAGTC	3 cut(s)	519, 672, 976
ScrFI	CCNGG	1 cut(s)	550
SduI	GDGCHC	1 cut(s)	1042
SfaNI	GCATC	2 cut(s)	508, 535
SmiMI	CAYNNNNRTG	2 cut(s)	582, 1035
SmlI	CTYRAG	3 cut(s)	172, 527, 946
SmoI	CTYRAG	3 cut(s)	172, 527, 946
Sse9I	AATT	4 cut(s)	107, 308, 729, 1051
SspMI	CTAG	4 cut(s)	560, 675, 869, 914
StyD4I	CCNGG	1 cut(s)	548
StyI	CCWWGG	1 cut(s)	684
TaaI	ACNGT	1 cut(s)	430
TaqI	TCGA	2 cut(s)	162, 968
TasI	AATT	4 cut(s)	107, 308, 729, 1051
TatI	WGTACW	1 cut(s)	118
Tru1I	TTAA	4 cut(s)	173, 192, 947, 1054
Tru9I	TTAA	4 cut(s)	173, 192, 947, 1054
TscAI	CASTG	2 cut(s)	406, 1000
TseFI	GTSAC	3 cut(s)	5, 449, 700
TseI	GCWGC	1 cut(s)	141
Tsp45I	GTSAC	3 cut(s)	5, 449, 700
TspDTI	ATGAA	7 cut(s)	321, 336, 338, 364, 879, 921, 1003
TspRI	CASTG	2 cut(s)	406, 1000
Vha464I	CTTAAG	2 cut(s)	172, 946
XapI	RAATTY	2 cut(s)	107, 308
XmiI	GTMKAC	1 cut(s)	990
XspI	CTAG	4 cut(s)	560, 675, 869, 914
ZrmI	AGTACT	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.