Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0016306

Physical Location & Seq

Genomic Coordinates Reverse (-)

897629 .. 901003

Gene Structure 3375 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G011700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGGTGACATTTCTTATTCCAATGGAACCAACAATGGCAATGGCAATGGGAATGGGAATGGGAATGGGAATGGGAATGGAGTAAATGGAAAAGCTCATTCAGTTCTGAATGGATACAGGAAGAGCTGTTGGTATGAGGAAGAAATTGAAGAAAATTTAAGATGGAGCTTTGCTCTTAATAGTATCTTGCATACAGGAGCTACTCCATACCAAGACATTGCATTGTTGGACACCAAACCCTTTGGAAAGGCTTTAGTCATTGATGGAAAGCTTCAAAGTGCTGAGACTGATGAATTTATCTACCATGAATGTCTTGTTCATCCACCACTTCTTCATCATCCCAATCCAAAGAGCATCTTCATCATGGGAGGAGGTGAAGGCTCCACTGCAAGAGAACTGCTGAGACACAGGACTGTGGAGAAGGTTGTCATGTGTGACATTGATGAGGAGGTGGTAGAGTTCTGTAAGTCATATTTGATTGTAAACAGTGAAGCTTTCTGTGATCCAAGACTGGAGCTCATCATCAATGATGCCAGGGCTGAGCTAGAACACAGAGAAGAGCAGTATGATGTGATAATTGGGGACCTTGCAGACCCAATAGAAGGAGGCCCATGCTATAAACTCTACACCAAATCCTTTTATGAGCTGATTGTCAAGCCTAGGCTCAGCAAGGAAGGCATTTTTGTCACACAGGCAGGTCCTGCTGGAATTTTCAGCCATACAGAAGTGTTTTCTTGCATTTACAATACTTTGAGGCAGGTCTTTAAATATGTTGTGCCTTATTCAGCTCATGTTCCTTCATATGCTGATATTTGGGGATGGATCATGGCTTCAGATACCCCTTTTGAGCTAAGTGCTGATGAATTAGACCTCAGAATTAAACAGAGGATCATAGGGGAGAACAGATACCTAGATGGAAAAACCTTATCATCAGCCTCAACCTTGAGCAAAGCTGTCCGGCAATCGATGGACAACGAGACTCATGTATACACAGAAGGAACGGCAAGGTTCATATATGGCCATGGCCATGGCAGTGCCTACAAACAAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0008150 GO:0009888 GO:0009914 GO:0009926 GO:0009987 GO:0010087 GO:0010089 GO:0010487 GO:0010817 GO:0016740 GO:0016765 GO:0016768 GO:0030154 GO:0032502 GO:0044424 GO:0044464 GO:0048759 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0060918 GO:0065007 GO:0065008 GO:1905177

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Spermine_synt_N Spermine_synth

Protein Analysis

351

Amino Acids

39.09

Weight (kDa)

5.32

Isoelectric Point (pI)

25.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016306)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15320 FvH4_4g15320
malus_domestica	MD13G1191500.v1.1 MD16G1191600.v1.1
prunus_persica	Prupe.1G011700_v2.0.a1
pyrus_communis	pycom13g16430 pycom16g16140
rosa_chinensis	RchiOBHm_Chr4g0416531
rosa_laevigata	RLG00000007976
rosa_roxburghii	Rroxscaffold_5G00360410
rosa_rugosa	Rorug04G0142400
rosa_samantha	Rh4AG205000 Rh4BG202700 Rh4DG202200
rosa_wichuraiana	Rw4G017350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	686, 748
AccI	GTMKAC	1 cut(s)	987
AclWI	GGATC	3 cut(s)	497, 830, 896
AcoI	YGGCCR	2 cut(s)	1018, 1024
AcsI	RAATTY	3 cut(s)	154, 293, 708
AcuI	CTGAAG	1 cut(s)	816
AfiI	CCNNNNNNNGG	1 cut(s)	602
AgsI	TTSAA	2 cut(s)	149, 275
AjnI	CCWGG	1 cut(s)	533
Alw21I	GWGCWC	1 cut(s)	519
Alw26I	GTCTC	3 cut(s)	278, 397, 971
AlwI	GGATC	3 cut(s)	497, 830, 896
AlwNI	CAGNNNCTG	1 cut(s)	701
AoxI	GGCC	3 cut(s)	607, 1018, 1024
ApoI	RAATTY	3 cut(s)	154, 293, 708
AspA2I	CCTAGG	1 cut(s)	659
AspS9I	GGNCC	3 cut(s)	583, 608, 698
AsuHPI	GGTGA	2 cut(s)	17, 386
AvaII	GGWCC	2 cut(s)	583, 698
AvrII	CCTAGG	1 cut(s)	659
BalI	TGGCCA	2 cut(s)	1020, 1026
BanII	GRGCYC	1 cut(s)	519
Bbv12I	GWGCWC	1 cut(s)	519
BccI	CCATC	5 cut(s)	156, 257, 813, 908, 961
BceAI	ACGGC	1 cut(s)	1017
BciT130I	CCWGG	1 cut(s)	535
BciVI	GTATCC	1 cut(s)	107
BcoDI	GTCTC	3 cut(s)	278, 397, 971
BfaI	CTAG	3 cut(s)	545, 660, 911
BfuAI	ACCTGC	2 cut(s)	686, 748
BfuI	GTATCC	1 cut(s)	107
BlnI	CCTAGG	1 cut(s)	659
BlpI	GCTNAGC	2 cut(s)	540, 665
Bme1390I	CCNGG	1 cut(s)	535
Bme18I	GGWCC	2 cut(s)	583, 698
BmgT120I	GGNCC	3 cut(s)	583, 608, 698
BmiI	GGNNCC	3 cut(s)	28, 382, 584
BmrFI	CCNGG	1 cut(s)	535
BmsI	GCATC	2 cut(s)	363, 520
BplI	GAGNNNNNCTC	2 cut(s)	157, 189
BpmI	CTGGAG	1 cut(s)	533
Bpu1102I	GCTNAGC	2 cut(s)	540, 665
BpuEI	CTTGAG	1 cut(s)	964
Bsa29I	ATCGAT	1 cut(s)	965
BsaJI	CCNNGG	4 cut(s)	534, 659, 1021, 1027
Bsc4I	CCNNNNNNNGG	1 cut(s)	602
Bse1I	ACTGG	1 cut(s)	516
Bse3DI	GCAATG	3 cut(s)	46, 52, 216
BseBI	CCWGG	1 cut(s)	535
BseCI	ATCGAT	1 cut(s)	965
BseDI	CCNNGG	4 cut(s)	534, 659, 1021, 1027
BseGI	GGATG	3 cut(s)	319, 337, 824
BseLI	CCNNNNNNNGG	1 cut(s)	602
BseMI	GCAATG	3 cut(s)	46, 52, 216
BseMII	CTCAG	5 cut(s)	273, 392, 531, 679, 886
BseNI	ACTGG	1 cut(s)	516
BseRI	GAGGAG	2 cut(s)	384, 461
BshFI	GGCC	3 cut(s)	609, 1020, 1026
BshVI	ATCGAT	1 cut(s)	965
BsiHKAI	GWGCWC	1 cut(s)	519
BsiSI	CCGG	1 cut(s)	958
BslFI	GGGAC	1 cut(s)	596
BslI	CCNNNNNNNGG	1 cut(s)	602
BsmAI	GTCTC	3 cut(s)	278, 397, 971
BsmFI	GGGAC	1 cut(s)	596
BsnI	GGCC	3 cut(s)	609, 1020, 1026
Bsp1286I	GDGCHC	1 cut(s)	519
Bsp143I	GATC	3 cut(s)	502, 822, 888
Bsp1720I	GCTNAGC	2 cut(s)	540, 665
Bsp19I	CCATGG	2 cut(s)	1021, 1027
BspANI	GGCC	3 cut(s)	609, 1020, 1026
BspCNI	CTCAG	5 cut(s)	274, 393, 532, 678, 885
BspDI	ATCGAT	1 cut(s)	965
BspLI	GGNNCC	3 cut(s)	28, 382, 584
BspMI	ACCTGC	2 cut(s)	686, 748
BspPI	GGATC	3 cut(s)	497, 830, 896
BspQI	GCTCTTC	2 cut(s)	116, 552
BsrDI	GCAATG	3 cut(s)	46, 52, 216
BsrI	ACTGG	1 cut(s)	516
BssECI	CCNNGG	4 cut(s)	534, 659, 1021, 1027
BssMI	GATC	3 cut(s)	502, 822, 888
BssNAI	GTATAC	1 cut(s)	988
BssT1I	CCWWGG	3 cut(s)	659, 1021, 1027
Bst1107I	GTATAC	1 cut(s)	988
Bst2UI	CCWGG	1 cut(s)	535
Bst4CI	ACNGT	2 cut(s)	415, 488
Bst6I	CTCTTC	2 cut(s)	116, 552
BstAPI	GCANNNNNTGC	1 cut(s)	701
BstDEI	CTNAG	6 cut(s)	282, 401, 540, 665, 851, 872
BstDSI	CCRYGG	2 cut(s)	1021, 1027
BstF5I	GGATG	3 cut(s)	319, 337, 824
BstKTI	GATC	3 cut(s)	505, 825, 891
BstMAI	GTCTC	3 cut(s)	278, 397, 971
BstMBI	GATC	3 cut(s)	502, 822, 888
BstMWI	GCNNNNNNNGC	2 cut(s)	675, 701
BstNI	CCWGG	1 cut(s)	535
BstSCI	CCNGG	1 cut(s)	533
BstXI	CCANNNNNNTGG	1 cut(s)	1028
BstZ17I	GTATAC	1 cut(s)	988
Bsu15I	ATCGAT	1 cut(s)	965
BsuI	GTATCC	1 cut(s)	107
BsuRI	GGCC	3 cut(s)	609, 1020, 1026
BsuTUI	ATCGAT	1 cut(s)	965
BtgI	CCRYGG	2 cut(s)	1021, 1027
BtsCI	GGATG	3 cut(s)	319, 337, 824
BtsI	GCAGTG	2 cut(s)	384, 1039
BtsIMutI	CAGTG	3 cut(s)	384, 493, 1039
BveI	ACCTGC	2 cut(s)	686, 748
CaiI	CAGNNNCTG	1 cut(s)	701
Cfr13I	GGNCC	3 cut(s)	583, 608, 698
ClaI	ATCGAT	1 cut(s)	965
CviAII	CATG	9 cut(s)	305, 364, 430, 612, 791, 826, 983, 1022, 1028
DdeI	CTNAG	6 cut(s)	282, 401, 540, 665, 851, 872
DpnI	GATC	3 cut(s)	504, 824, 890
DpnII	GATC	3 cut(s)	502, 822, 888
DraI	TTTAAA	1 cut(s)	766
EaeI	YGGCCR	2 cut(s)	1018, 1024
Eam1104I	CTCTTC	2 cut(s)	116, 552
EarI	CTCTTC	2 cut(s)	116, 552
Ecl136II	GAGCTC	1 cut(s)	517
Eco130I	CCWWGG	3 cut(s)	659, 1021, 1027
Eco24I	GRGCYC	1 cut(s)	519
Eco47I	GGWCC	2 cut(s)	583, 698
Eco53kI	GAGCTC	1 cut(s)	517
Eco57I	CTGAAG	1 cut(s)	816
EcoICRI	GAGCTC	1 cut(s)	517
EcoO109I	RGGNCCY	2 cut(s)	583, 698
EcoRII	CCWGG	1 cut(s)	533
EcoT14I	CCWWGG	3 cut(s)	659, 1021, 1027
EcoT38I	GRGCYC	1 cut(s)	519
ErhI	CCWWGG	3 cut(s)	659, 1021, 1027
FaeI	CATG	9 cut(s)	308, 367, 433, 615, 794, 829, 986, 1025, 1031
FalI	AAGNNNNNCTT	2 cut(s)	341, 373
FaqI	GGGAC	1 cut(s)	596
FatI	CATG	9 cut(s)	304, 363, 429, 611, 790, 825, 982, 1021, 1027
FauNDI	CATATG	1 cut(s)	802
FblI	GTMKAC	1 cut(s)	987
FokI	GGATG	3 cut(s)	306, 324, 831
FriOI	GRGCYC	1 cut(s)	519
FspBI	CTAG	3 cut(s)	545, 660, 911
GsuI	CTGGAG	1 cut(s)	533
HaeIII	GGCC	3 cut(s)	609, 1020, 1026
HapII	CCGG	1 cut(s)	958
Hin1II	CATG	9 cut(s)	308, 367, 433, 615, 794, 829, 986, 1025, 1031
HindIII	AAGCTT	2 cut(s)	269, 492
HinfI	GANTC	1 cut(s)	979
HpaII	CCGG	1 cut(s)	958
HphI	GGTGA	2 cut(s)	17, 386
Hpy166II	GTNNAC	2 cut(s)	484, 988
Hpy188I	TCNGA	3 cut(s)	108, 835, 875
Hpy8I	GTNNAC	2 cut(s)	484, 988
HpyAV	CCTTC	6 cut(s)	371, 415, 596, 668, 807, 989
HpyCH4III	ACNGT	2 cut(s)	415, 488
HpyCH4V	TGCA	5 cut(s)	190, 221, 389, 590, 738
HpyF10VI	GCNNNNNNNGC	2 cut(s)	675, 701
HpyF3I	CTNAG	6 cut(s)	282, 401, 540, 665, 851, 872
Hsp92II	CATG	9 cut(s)	308, 367, 433, 615, 794, 829, 986, 1025, 1031
Kzo9I	GATC	3 cut(s)	502, 822, 888
LguI	GCTCTTC	2 cut(s)	116, 552
LmnI	GCTCC	4 cut(s)	165, 197, 386, 514
LweI	GCATC	2 cut(s)	363, 520
MaeI	CTAG	3 cut(s)	545, 660, 911
MaeIII	GTNAC	3 cut(s)	5, 434, 685
MalI	GATC	3 cut(s)	504, 824, 890
MboI	GATC	3 cut(s)	502, 822, 888
MboII	GAAGA	6 cut(s)	133, 152, 161, 323, 349, 569
MhlI	GDGCHC	1 cut(s)	519
MlsI	TGGCCA	2 cut(s)	1020, 1026
MluCI	AATT	8 cut(s)	144, 154, 293, 576, 708, 863, 876, 1048
MluNI	TGGCCA	2 cut(s)	1020, 1026
MlyI	GAGTC	1 cut(s)	973
MmeI	TCCRAC	1 cut(s)	207
Mox20I	TGGCCA	2 cut(s)	1020, 1026
MscI	TGGCCA	2 cut(s)	1020, 1026
MseI	TTAA	5 cut(s)	158, 177, 765, 879, 1051
MslI	CAYNNNNRTG	2 cut(s)	1026, 1032
Msp20I	TGGCCA	2 cut(s)	1020, 1026
MspI	CCGG	1 cut(s)	958
MspR9I	CCNGG	1 cut(s)	535
MvaI	CCWGG	1 cut(s)	535
MwoI	GCNNNNNNNGC	2 cut(s)	675, 701
NcoI	CCATGG	2 cut(s)	1021, 1027
NdeI	CATATG	1 cut(s)	802
NdeII	GATC	3 cut(s)	502, 822, 888
NlaIII	CATG	9 cut(s)	308, 367, 433, 615, 794, 829, 986, 1025, 1031
NlaIV	GGNNCC	3 cut(s)	28, 382, 584
NmuCI	GTSAC	3 cut(s)	5, 434, 685
PciSI	GCTCTTC	2 cut(s)	116, 552
PleI	GAGTC	1 cut(s)	973
PpsI	GAGTC	1 cut(s)	973
PpuMI	RGGWCCY	2 cut(s)	583, 698
Psp124BI	GAGCTC	1 cut(s)	519
Psp5II	RGGWCCY	2 cut(s)	583, 698
Psp6I	CCWGG	1 cut(s)	533
PspGI	CCWGG	1 cut(s)	533
PspN4I	GGNNCC	3 cut(s)	28, 382, 584
PspPI	GGNCC	3 cut(s)	583, 608, 698
PspPPI	RGGWCCY	2 cut(s)	583, 698
PstNI	CAGNNNCTG	1 cut(s)	701
RseI	CAYNNNNRTG	2 cut(s)	1026, 1032
SacI	GAGCTC	1 cut(s)	519
SapI	GCTCTTC	2 cut(s)	116, 552
SaqAI	TTAA	5 cut(s)	158, 177, 765, 879, 1051
Sau3AI	GATC	3 cut(s)	502, 822, 888
Sau96I	GGNCC	3 cut(s)	583, 608, 698
SchI	GAGTC	1 cut(s)	973
ScrFI	CCNGG	1 cut(s)	535
SduI	GDGCHC	1 cut(s)	519
SfaNI	GCATC	2 cut(s)	363, 520
SinI	GGWCC	2 cut(s)	583, 698
SmiMI	CAYNNNNRTG	2 cut(s)	1026, 1032
SmlI	CTYRAG	1 cut(s)	943
SmoI	CTYRAG	1 cut(s)	943
Sse9I	AATT	8 cut(s)	144, 154, 293, 576, 708, 863, 876, 1048
SspMI	CTAG	3 cut(s)	545, 660, 911
SstI	GAGCTC	1 cut(s)	519
StyD4I	CCNGG	1 cut(s)	533
StyI	CCWWGG	3 cut(s)	659, 1021, 1027
TaaI	ACNGT	2 cut(s)	415, 488
TaqI	TCGA	1 cut(s)	965
TasI	AATT	8 cut(s)	144, 154, 293, 576, 708, 863, 876, 1048
Tru1I	TTAA	5 cut(s)	158, 177, 765, 879, 1051
Tru9I	TTAA	5 cut(s)	158, 177, 765, 879, 1051
TscAI	CASTG	3 cut(s)	391, 493, 1039
TseFI	GTSAC	3 cut(s)	5, 434, 685
Tsp45I	GTSAC	3 cut(s)	5, 434, 685
TspDTI	ATGAA	8 cut(s)	306, 308, 321, 323, 349, 789, 876, 1000
TspRI	CASTG	3 cut(s)	391, 493, 1039
VpaK11BI	GGWCC	2 cut(s)	583, 698
XapI	RAATTY	3 cut(s)	154, 293, 708
XmaJI	CCTAGG	1 cut(s)	659
XmiI	GTMKAC	1 cut(s)	987
XspI	CTAG	3 cut(s)	545, 660, 911

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.