Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0016306

Physical Location & Seq

Genomic Coordinates Forward (+)

38994220 .. 38997155

Gene Structure 2936 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G017350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGGTGACATTTCTTATTCCAATGGCAATGGAAATGGAGTGAATGGGAATGGGAATGGGTATGTAGTGAATGGAATAGGGAATGGAGTAAATGGAAATGAAAATGGAGTGAATGGAAAATTCCATCCAGTACTGAATGGCTACCGGAAGAGCTGCTGGTACGAGGAAGAAATCGAAGAAAACTTAAGATGGAGCTTTGCTCTTAATAGTATCCTGCATACAGGAGCTACTCCATTCCAAGACATTGCTTTGTTGGATACAAAGCCCTTCGGAAAGGCTTTGGTCATTGATGGAAAGCTTCAAAGTGCTGAGACTGATGAATTTATCTACCATGAATGTCTTTGCCATCCAGCACTTCTTCATCATCCAAATCCAACCAACATCTTCATCATGGGAGGAGGCGAAGGCTCCACTGCCAGAGAACTTCTGAGACACAAGACTGTGGAGAAGGTTGTCATGTGTGACATTGATGAGGAGGTGGTGGAGTTCTGCAAATCATTTTTGGATGTAAACAGAGAAGCTTTCTGTGATGCAAGACTCAAGCTCATCATCAATGATGCCAGGGCTGAGCTAGAACACACAGAAAACCACTATGATGTGATCATTGGAGATCTTGCAGACCCAATAGAAGGAGGACCATGTTATAAACTCTACACCAAATCTTTCTATGAGTTAATTGTCAAACCTAGACTCACTAAGGATGGCATTTTTGTCACACAGGCTGGTCCTGCTGGAATATTCAGCCACACTGAAGTATTCTCTTGCATCTACAATACTTTAAGGCAGGTCTTCAAATATGTTGTGCCTTATTCAGCTCATATTCCTTCTTATGCTGATACTTGGGGATGGATCATGGCTTCAGATACCCCATTTGTCCTTGGTGCTGATGAACTAGACATGAGAACTAAACTGAGGATCAATGGGGAGAACAGATACCTAGATGGGAAAACCTTTTCATCAGCCTCTACCTTAAGCAAAGCCGTTCGTAAATCGACGGAAAATGAGACTCATGTATATACAGAAGGAACTGCAAGGTTCATATATGGTCATGGTCATAATAGTGCCCAAAAACACAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0008150 GO:0009888 GO:0009914 GO:0009926 GO:0009987 GO:0010087 GO:0010089 GO:0010487 GO:0010817 GO:0016740 GO:0016765 GO:0016768 GO:0030154 GO:0032502 GO:0044424 GO:0044464 GO:0048759 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0060918 GO:0065007 GO:0065008 GO:1905177

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Spermine_synt_N Spermine_synth

Protein Analysis

359

Amino Acids

39.99

Weight (kDa)

5.59

Isoelectric Point (pI)

26.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Spermine_synt_N	PF17284	53 - 104	1.2e-12	Spermidine synthase tetramerisation domain
Spermine_synth	PF01564	107 - 285	3.1e-46	Spermine/spermidine synthase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016306)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15320 FvH4_4g15320
malus_domestica	MD13G1191500.v1.1 MD16G1191600.v1.1
prunus_persica	Prupe.1G011700_v2.0.a1
pyrus_communis	pycom13g16430 pycom16g16140
rosa_chinensis	RchiOBHm_Chr4g0416531
rosa_laevigata	RLG00000007976
rosa_roxburghii	Rroxscaffold_5G00360410
rosa_rugosa	Rorug04G0142400
rosa_samantha	Rh4AG205000 Rh4BG202700 Rh4DG202200
rosa_wichuraiana	Rw4G017350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	645
Acc36I	ACCTGC	1 cut(s)	775
AclWI	GGATC	2 cut(s)	857, 923
AcsI	RAATTY	2 cut(s)	119, 320
AcuI	CTGAAG	2 cut(s)	771, 843
AfaI	GTAC	2 cut(s)	132, 161
AfiI	CCNNNNNNNGG	1 cut(s)	629
AflII	CTTAAG	2 cut(s)	184, 970
AgsI	TTSAA	2 cut(s)	302, 793
AjnI	CCWGG	1 cut(s)	560
AluBI	AGCT	8 cut(s)	153, 195, 227, 298, 521, 544, 571, 815
AluI	AGCT	8 cut(s)	153, 195, 227, 298, 521, 544, 571, 815
Alw26I	GTCTC	3 cut(s)	305, 424, 998
AlwI	GGATC	2 cut(s)	857, 923
ApeKI	GCWGC	1 cut(s)	153
ApoI	RAATTY	2 cut(s)	119, 320
AspS9I	GGNCC	2 cut(s)	635, 725
AsuHPI	GGTGA	1 cut(s)	17
AvaII	GGWCC	2 cut(s)	635, 725
BaeGI	GKGCMC	1 cut(s)	1066
BbsI	GAAGAC	1 cut(s)	781
BbvI	GCAGC	1 cut(s)	140
BccI	CCATC	7 cut(s)	132, 183, 284, 354, 695, 840, 935
BceAI	ACGGC	1 cut(s)	965
BciT130I	CCWGG	1 cut(s)	562
BciVI	GTATCC	2 cut(s)	221, 250
BclI	TGATCA	1 cut(s)	600
BcoDI	GTCTC	3 cut(s)	305, 424, 998
BfaI	CTAG	4 cut(s)	572, 687, 893, 938
BfrI	CTTAAG	2 cut(s)	184, 970
BfuAI	ACCTGC	1 cut(s)	775
BfuI	GTATCC	2 cut(s)	221, 250
BglII	AGATCT	1 cut(s)	610
BisI	GCNGC	1 cut(s)	154
BlpI	GCTNAGC	1 cut(s)	567
BlsI	GCNGC	1 cut(s)	155
BmcAI	AGTACT	1 cut(s)	132
Bme1390I	CCNGG	1 cut(s)	562
Bme18I	GGWCC	2 cut(s)	635, 725
BmgT120I	GGNCC	2 cut(s)	635, 725
BmiI	GGNNCC	1 cut(s)	409
BmrFI	CCNGG	1 cut(s)	562
BmsI	GCATC	3 cut(s)	520, 547, 774
BpiI	GAAGAC	1 cut(s)	781
BplI	GAGNNNNNCTC	2 cut(s)	184, 216
Bpu1102I	GCTNAGC	1 cut(s)	567
BpuEI	CTTGAG	1 cut(s)	524
BsaJI	CCNNGG	2 cut(s)	561, 877
BsaWI	WCCGGW	1 cut(s)	144
Bsc4I	CCNNNNNNNGG	1 cut(s)	629
Bse1I	ACTGG	1 cut(s)	128
Bse3DI	GCAATG	2 cut(s)	34, 243
BseBI	CCWGG	1 cut(s)	562
BseDI	CCNNGG	2 cut(s)	561, 877
BseGI	GGATG	6 cut(s)	124, 346, 364, 511, 706, 851
BseLI	CCNNNNNNNGG	1 cut(s)	629
BseMI	GCAATG	2 cut(s)	34, 243
BseMII	CTCAG	4 cut(s)	300, 419, 558, 902
BseNI	ACTGG	1 cut(s)	128
BseRI	GAGGAG	2 cut(s)	411, 488
BseSI	GKGCMC	1 cut(s)	1066
BseXI	GCAGC	1 cut(s)	140
BsiSI	CCGG	1 cut(s)	145
BslI	CCNNNNNNNGG	1 cut(s)	629
BsmAI	GTCTC	3 cut(s)	305, 424, 998
Bsp1286I	GDGCHC	1 cut(s)	1066
Bsp143I	GATC	4 cut(s)	600, 610, 849, 915
Bsp1720I	GCTNAGC	1 cut(s)	567
BspCNI	CTCAG	4 cut(s)	301, 420, 559, 903
BspLI	GGNNCC	1 cut(s)	409
BspMI	ACCTGC	1 cut(s)	775
BspPI	GGATC	2 cut(s)	857, 923
BspQI	GCTCTTC	1 cut(s)	143
BspTI	CTTAAG	2 cut(s)	184, 970
BsrDI	GCAATG	2 cut(s)	34, 243
BsrI	ACTGG	1 cut(s)	128
BssECI	CCNNGG	2 cut(s)	561, 877
BssMI	GATC	4 cut(s)	600, 610, 849, 915
BssT1I	CCWWGG	1 cut(s)	877
Bst2UI	CCWGG	1 cut(s)	562
Bst4CI	ACNGT	1 cut(s)	442
Bst6I	CTCTTC	1 cut(s)	143
BstAFI	CTTAAG	2 cut(s)	184, 970
BstDEI	CTNAG	5 cut(s)	309, 428, 567, 696, 911
BstF5I	GGATG	6 cut(s)	124, 346, 364, 511, 706, 851
BstKTI	GATC	4 cut(s)	603, 613, 852, 918
BstMAI	GTCTC	3 cut(s)	305, 424, 998
BstMBI	GATC	4 cut(s)	600, 610, 849, 915
BstMWI	GCNNNNNNNGC	1 cut(s)	728
BstNI	CCWGG	1 cut(s)	562
BstSCI	CCNGG	1 cut(s)	560
BstSLI	GKGCMC	1 cut(s)	1066
BstV1I	GCAGC	1 cut(s)	140
BstV2I	GAAGAC	1 cut(s)	781
BstX2I	RGATCY	1 cut(s)	610
BstYI	RGATCY	1 cut(s)	610
BsuI	GTATCC	2 cut(s)	221, 250
BtsCI	GGATG	6 cut(s)	124, 346, 364, 511, 706, 851
BtsI	GCAGTG	1 cut(s)	411
BtsIMutI	CAGTG	2 cut(s)	411, 747
BveI	ACCTGC	1 cut(s)	775
Cfr13I	GGNCC	2 cut(s)	635, 725
Csp6I	GTAC	2 cut(s)	131, 160
CviAII	CATG	8 cut(s)	332, 391, 457, 639, 853, 898, 1010, 1049
CviQI	GTAC	2 cut(s)	131, 160
DdeI	CTNAG	5 cut(s)	309, 428, 567, 696, 911
DpnI	GATC	4 cut(s)	602, 612, 851, 917
DpnII	GATC	4 cut(s)	600, 610, 849, 915
Eam1104I	CTCTTC	1 cut(s)	143
EarI	CTCTTC	1 cut(s)	143
Eco130I	CCWWGG	1 cut(s)	877
Eco47I	GGWCC	2 cut(s)	635, 725
Eco57I	CTGAAG	2 cut(s)	771, 843
EcoRII	CCWGG	1 cut(s)	560
EcoT14I	CCWWGG	1 cut(s)	877
ErhI	CCWWGG	1 cut(s)	877
FaeI	CATG	8 cut(s)	335, 394, 460, 642, 856, 901, 1013, 1052
FatI	CATG	8 cut(s)	331, 390, 456, 638, 852, 897, 1009, 1048
FbaI	TGATCA	1 cut(s)	600
Fnu4HI	GCNGC	1 cut(s)	154
FokI	GGATG	6 cut(s)	111, 333, 351, 518, 713, 858
Fsp4HI	GCNGC	1 cut(s)	154
FspBI	CTAG	4 cut(s)	572, 687, 893, 938
GluI	GCNGC	1 cut(s)	154
HapII	CCGG	1 cut(s)	145
Hin1II	CATG	8 cut(s)	335, 394, 460, 642, 856, 901, 1013, 1052
HindIII	AAGCTT	2 cut(s)	296, 519
HinfI	GANTC	3 cut(s)	537, 690, 1006
HpaII	CCGG	1 cut(s)	145
HphI	GGTGA	1 cut(s)	17
Hpy166II	GTNNAC	1 cut(s)	511
Hpy188I	TCNGA	3 cut(s)	272, 429, 862
Hpy8I	GTNNAC	1 cut(s)	511
Hpy99I	CGWCG	1 cut(s)	997
HpyAV	CCTTC	6 cut(s)	277, 398, 442, 623, 834, 1016
HpyCH4III	ACNGT	1 cut(s)	442
HpyCH4V	TGCA	6 cut(s)	217, 492, 533, 617, 765, 1031
HpyF10VI	GCNNNNNNNGC	1 cut(s)	728
HpyF3I	CTNAG	5 cut(s)	309, 428, 567, 696, 911
Hsp92II	CATG	8 cut(s)	335, 394, 460, 642, 856, 901, 1013, 1052
Ksp22I	TGATCA	1 cut(s)	600
Kzo9I	GATC	4 cut(s)	600, 610, 849, 915
LguI	GCTCTTC	1 cut(s)	143
LmnI	GCTCC	3 cut(s)	192, 224, 413
Lsp1109I	GCAGC	1 cut(s)	140
LweI	GCATC	3 cut(s)	520, 547, 774
MaeI	CTAG	4 cut(s)	572, 687, 893, 938
MaeIII	GTNAC	3 cut(s)	5, 461, 712
MalI	GATC	4 cut(s)	602, 612, 851, 917
MboI	GATC	4 cut(s)	600, 610, 849, 915
MboII	GAAGA	6 cut(s)	160, 179, 188, 350, 376, 781
MflI	RGATCY	1 cut(s)	610
MhlI	GDGCHC	1 cut(s)	1066
MluCI	AATT	4 cut(s)	119, 320, 675, 1075
MlyI	GAGTC	3 cut(s)	531, 684, 1000
MmeI	TCCRAC	2 cut(s)	234, 398
MnlI	CCTC	8 cut(s)	157, 389, 392, 466, 469, 626, 906, 973
MseI	TTAA	6 cut(s)	185, 204, 674, 779, 971, 1078
MslI	CAYNNNNRTG	2 cut(s)	594, 1059
MspCI	CTTAAG	2 cut(s)	184, 970
MspI	CCGG	1 cut(s)	145
MspR9I	CCNGG	1 cut(s)	562
MvaI	CCWGG	1 cut(s)	562
MwoI	GCNNNNNNNGC	1 cut(s)	728
NdeII	GATC	4 cut(s)	600, 610, 849, 915
NlaIII	CATG	8 cut(s)	335, 394, 460, 642, 856, 901, 1013, 1052
NlaIV	GGNNCC	1 cut(s)	409
NmuCI	GTSAC	3 cut(s)	5, 461, 712
PciSI	GCTCTTC	1 cut(s)	143
PkrI	GCNGC	1 cut(s)	155
PleI	GAGTC	3 cut(s)	531, 684, 1000
PpsI	GAGTC	3 cut(s)	531, 684, 1000
PsiI	TTATAA	1 cut(s)	645
Psp6I	CCWGG	1 cut(s)	560
PspGI	CCWGG	1 cut(s)	560
PspN4I	GGNNCC	1 cut(s)	409
PspPI	GGNCC	2 cut(s)	635, 725
PsuI	RGATCY	1 cut(s)	610
RsaI	GTAC	2 cut(s)	132, 161
RsaNI	GTAC	2 cut(s)	131, 160
RseI	CAYNNNNRTG	2 cut(s)	594, 1059
SapI	GCTCTTC	1 cut(s)	143
SaqAI	TTAA	6 cut(s)	185, 204, 674, 779, 971, 1078
SatI	GCNGC	1 cut(s)	154
Sau3AI	GATC	4 cut(s)	600, 610, 849, 915
Sau96I	GGNCC	2 cut(s)	635, 725
ScaI	AGTACT	1 cut(s)	132
SchI	GAGTC	3 cut(s)	531, 684, 1000
ScrFI	CCNGG	1 cut(s)	562
SduI	GDGCHC	1 cut(s)	1066
SfaNI	GCATC	3 cut(s)	520, 547, 774
SinI	GGWCC	2 cut(s)	635, 725
SmiMI	CAYNNNNRTG	2 cut(s)	594, 1059
SmlI	CTYRAG	3 cut(s)	184, 539, 970
SmoI	CTYRAG	3 cut(s)	184, 539, 970
Sse9I	AATT	4 cut(s)	119, 320, 675, 1075
SspI	AATATT	1 cut(s)	738
SspMI	CTAG	4 cut(s)	572, 687, 893, 938
StyD4I	CCNGG	1 cut(s)	560
StyI	CCWWGG	1 cut(s)	877
TaaI	ACNGT	1 cut(s)	442
TaqI	TCGA	2 cut(s)	174, 992
TasI	AATT	4 cut(s)	119, 320, 675, 1075
TatI	WGTACW	1 cut(s)	130
Tru1I	TTAA	6 cut(s)	185, 204, 674, 779, 971, 1078
Tru9I	TTAA	6 cut(s)	185, 204, 674, 779, 971, 1078
TscAI	CASTG	2 cut(s)	418, 754
TseFI	GTSAC	3 cut(s)	5, 461, 712
TseI	GCWGC	1 cut(s)	153
Tsp45I	GTSAC	3 cut(s)	5, 461, 712
TspDTI	ATGAA	8 cut(s)	114, 333, 348, 350, 376, 903, 945, 1027
TspGWI	ACGGA	1 cut(s)	1010
TspRI	CASTG	2 cut(s)	418, 754
Vha464I	CTTAAG	2 cut(s)	184, 970
VpaK11BI	GGWCC	2 cut(s)	635, 725
XapI	RAATTY	2 cut(s)	119, 320
XspI	CTAG	4 cut(s)	572, 687, 893, 938
ZrmI	AGTACT	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.