Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0016306

Physical Location & Seq

Genomic Coordinates Reverse (-)

12206644 .. 12209383

Gene Structure 2740 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g16430.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGGTGATATTTCGTATTCCAATGGAACCAACAACGGGAATGGGAATGGGAATGTGCATGTGAATGGAAATGGAGTGAATGGCAAGGGCCATTCAGTGCTGAATGGATACAGGAAGAGCTGTTGGTATGAGGAAGAAATTGAAGAAAATTTGAGATGGAGCTTTGCTCTTAATAGTATATTGCATACAGGAGCAACTCCATTTCAAGACATTGCATTGCTGGACACAAAGCCATTTGGAAAGGCTTTAGTAATTGATGGAAAGCTTCAAAGCGCTGAGACGGATGAATTTATCTACCACGAATGTCTTGTCCACCCATCACTTCTCCATCATTCAAATCCAAAGAGCATCTTCATCATGGGAGGAGGTGAAGGCTCAACTGCAAGAGAACTTCTGAGGCACAGGACTGTGGAGAAGGTTGTCATGTGTGACATTGATGAGGAGGTGGTAGAGTTCTGCAAGTCATATTTGACTGTAAACAGTGAAGCTTTCTGTGATCCAAGACTGGAGCTCATCATCAATGATGCCAGGGCTGAGCTAGAACACAGAGAAGAGCAGTACGATGTGATCATTGGTGACCTAGCAGACCCAATAGAAGGAGGCCCATGTTATAAACTCTACACCAAATCCTTCTATGAGTTTACTGTCAAACCAAGACTCACCAAAGAAGGCATTTTTGTCACACAGGCAGGTCCTGCTGGAATTTTCAGCCACACAGAAGTATTCTCCTGCATTTACAATACTTTGAGGCAGGTCTTCAAATATGTTGTGCCTTATTCAGCTCATATTCCTTCTTATGCTGATACTTGGGGATGGATCCTGGCTTCAGATACCCCTTTTGAGCTTAGTGCCGAGGAACTAGACCTCAGAATTAAACAAAGGATCGATCGTCATCGAAACAGGGGAGAACAGATACCTAGATGGAAAAACATTTTCATCAGCTTCTACCTTGAGCAAAGCTGTTCGGAAATCGATGGTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0008150 GO:0009888 GO:0009914 GO:0009926 GO:0009987 GO:0010087 GO:0010089 GO:0010487 GO:0010817 GO:0016740 GO:0016765 GO:0016768 GO:0030154 GO:0032502 GO:0044424 GO:0044464 GO:0048759 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0060918 GO:0065007 GO:0065008 GO:1905177

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Spermine_synt_N Spermine_synth

Protein Analysis

328

Amino Acids

37.07

Weight (kDa)

5.2

Isoelectric Point (pI)

38.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016306)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15320 FvH4_4g15320
malus_domestica	MD13G1191500.v1.1 MD16G1191600.v1.1
prunus_persica	Prupe.1G011700_v2.0.a1
pyrus_communis	pycom13g16430 pycom16g16140
rosa_chinensis	RchiOBHm_Chr4g0416531
rosa_laevigata	RLG00000007976
rosa_roxburghii	Rroxscaffold_5G00360410
rosa_rugosa	Rorug04G0142400
rosa_samantha	Rh4AG205000 Rh4BG202700 Rh4DG202200
rosa_wichuraiana	Rw4G017350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	612
Acc36I	ACCTGC	2 cut(s)	680, 742
AclWI	GGATC	4 cut(s)	491, 811, 824, 890
AcsI	RAATTY	3 cut(s)	148, 287, 702
AcuI	CTGAAG	1 cut(s)	810
AfaI	GTAC	1 cut(s)	560
AfeI	AGCGCT	1 cut(s)	274
AfiI	CCNNNNNNNGG	2 cut(s)	36, 596
AgsI	TTSAA	5 cut(s)	143, 206, 269, 336, 760
AjnI	CCWGG	2 cut(s)	527, 819
Alw21I	GWGCWC	1 cut(s)	513
Alw26I	GTCTC	1 cut(s)	272
AlwI	GGATC	4 cut(s)	491, 811, 824, 890
AlwNI	CAGNNNCTG	1 cut(s)	695
Aor51HI	AGCGCT	1 cut(s)	274
AoxI	GGCC	2 cut(s)	88, 601
ApoI	RAATTY	3 cut(s)	148, 287, 702
ArsI	GACNNNNNNTTYG	2 cut(s)	294, 326
AspLEI	GCGC	1 cut(s)	275
AspS9I	GGNCC	3 cut(s)	88, 602, 692
AsuHPI	GGTGA	4 cut(s)	17, 380, 587, 652
AvaII	GGWCC	1 cut(s)	692
BamHI	GGATCC	1 cut(s)	816
BanII	GRGCYC	1 cut(s)	513
BbsI	GAAGAC	1 cut(s)	748
Bbv12I	GWGCWC	1 cut(s)	513
BccI	CCATC	7 cut(s)	150, 251, 325, 336, 807, 915, 968
BciT130I	CCWGG	2 cut(s)	529, 821
BciVI	GTATCC	1 cut(s)	101
BclI	TGATCA	1 cut(s)	567
BcoDI	GTCTC	1 cut(s)	272
BfaI	CTAG	4 cut(s)	539, 581, 860, 918
BfoI	RGCGCY	1 cut(s)	276
BfuAI	ACCTGC	2 cut(s)	680, 742
BfuI	GTATCC	1 cut(s)	101
BlpI	GCTNAGC	1 cut(s)	534
Bme1390I	CCNGG	2 cut(s)	529, 821
Bme18I	GGWCC	1 cut(s)	692
BmgT120I	GGNCC	3 cut(s)	88, 602, 692
BmiI	GGNNCC	2 cut(s)	28, 818
BmrFI	CCNGG	2 cut(s)	529, 821
BmsI	GCATC	2 cut(s)	357, 514
BpiI	GAAGAC	1 cut(s)	748
BplI	GAGNNNNNCTC	2 cut(s)	151, 183
BpmI	CTGGAG	1 cut(s)	527
Bpu1102I	GCTNAGC	1 cut(s)	534
BpuEI	CTTGAG	1 cut(s)	971
Bsa29I	ATCGAT	2 cut(s)	885, 972
BsaBI	GATNNNNATC	1 cut(s)	891
BsaJI	CCNNGG	2 cut(s)	528, 852
Bsc4I	CCNNNNNNNGG	2 cut(s)	36, 596
Bse1I	ACTGG	1 cut(s)	510
Bse3DI	GCAATG	2 cut(s)	210, 215
Bse8I	GATNNNNATC	1 cut(s)	891
BseBI	CCWGG	2 cut(s)	529, 821
BseCI	ATCGAT	2 cut(s)	885, 972
BseDI	CCNNGG	2 cut(s)	528, 852
BseGI	GGATG	2 cut(s)	289, 818
BseJI	GATNNNNATC	1 cut(s)	891
BseLI	CCNNNNNNNGG	2 cut(s)	36, 596
BseMI	GCAATG	2 cut(s)	210, 215
BseMII	CTCAG	4 cut(s)	267, 386, 525, 880
BseNI	ACTGG	1 cut(s)	510
BseRI	GAGGAG	2 cut(s)	378, 455
Bsh1285I	CGRYCG	1 cut(s)	889
BshFI	GGCC	2 cut(s)	90, 603
BshVI	ATCGAT	2 cut(s)	885, 972
BsiEI	CGRYCG	1 cut(s)	889
BsiHKAI	GWGCWC	1 cut(s)	513
BslI	CCNNNNNNNGG	2 cut(s)	36, 596
BsmAI	GTCTC	1 cut(s)	272
BsmBI	CGTCTC	1 cut(s)	272
BsnI	GGCC	2 cut(s)	90, 603
Bsp1286I	GDGCHC	1 cut(s)	513
Bsp143I	GATC	5 cut(s)	496, 567, 816, 882, 886
Bsp1720I	GCTNAGC	1 cut(s)	534
BspANI	GGCC	2 cut(s)	90, 603
BspCNI	CTCAG	4 cut(s)	268, 387, 526, 879
BspDI	ATCGAT	2 cut(s)	885, 972
BspLI	GGNNCC	2 cut(s)	28, 818
BspMI	ACCTGC	2 cut(s)	680, 742
BspPI	GGATC	4 cut(s)	491, 811, 824, 890
BspQI	GCTCTTC	2 cut(s)	110, 546
BsrDI	GCAATG	2 cut(s)	210, 215
BsrI	ACTGG	1 cut(s)	510
BssECI	CCNNGG	2 cut(s)	528, 852
BssMI	GATC	5 cut(s)	496, 567, 816, 882, 886
Bst2UI	CCWGG	2 cut(s)	529, 821
Bst4CI	ACNGT	4 cut(s)	409, 475, 482, 646
Bst6I	CTCTTC	2 cut(s)	110, 546
BstAPI	GCANNNNNTGC	1 cut(s)	695
BstDEI	CTNAG	5 cut(s)	276, 395, 534, 845, 866
BstEII	GGTNACC	1 cut(s)	575
BstF5I	GGATG	2 cut(s)	289, 818
BstH2I	RGCGCY	1 cut(s)	276
BstHHI	GCGC	1 cut(s)	275
BstKTI	GATC	5 cut(s)	499, 570, 819, 885, 889
BstMAI	GTCTC	1 cut(s)	272
BstMBI	GATC	5 cut(s)	496, 567, 816, 882, 886
BstMCI	CGRYCG	1 cut(s)	889
BstMWI	GCNNNNNNNGC	1 cut(s)	695
BstNI	CCWGG	2 cut(s)	529, 821
BstNSI	RCATGY	1 cut(s)	62
BstPI	GGTNACC	1 cut(s)	575
BstSCI	CCNGG	2 cut(s)	527, 819
BstV2I	GAAGAC	1 cut(s)	748
BstX2I	RGATCY	1 cut(s)	816
BstYI	RGATCY	1 cut(s)	816
Bsu15I	ATCGAT	2 cut(s)	885, 972
BsuI	GTATCC	1 cut(s)	101
BsuRI	GGCC	2 cut(s)	90, 603
BsuTUI	ATCGAT	2 cut(s)	885, 972
BtsCI	GGATG	2 cut(s)	289, 818
BtsIMutI	CAGTG	2 cut(s)	102, 487
BveI	ACCTGC	2 cut(s)	680, 742
CaiI	CAGNNNCTG	1 cut(s)	695
CfoI	GCGC	1 cut(s)	275
Cfr13I	GGNCC	3 cut(s)	88, 602, 692
ClaI	ATCGAT	2 cut(s)	885, 972
Csp6I	GTAC	1 cut(s)	559
CviAII	CATG	4 cut(s)	59, 358, 424, 606
CviQI	GTAC	1 cut(s)	559
DdeI	CTNAG	5 cut(s)	276, 395, 534, 845, 866
DpnI	GATC	5 cut(s)	498, 569, 818, 884, 888
DpnII	GATC	5 cut(s)	496, 567, 816, 882, 886
Eam1104I	CTCTTC	2 cut(s)	110, 546
EarI	CTCTTC	2 cut(s)	110, 546
Ecl136II	GAGCTC	1 cut(s)	511
Eco24I	GRGCYC	1 cut(s)	513
Eco47I	GGWCC	1 cut(s)	692
Eco47III	AGCGCT	1 cut(s)	274
Eco53kI	GAGCTC	1 cut(s)	511
Eco57I	CTGAAG	1 cut(s)	810
Eco91I	GGTNACC	1 cut(s)	575
EcoICRI	GAGCTC	1 cut(s)	511
EcoO109I	RGGNCCY	1 cut(s)	692
EcoO65I	GGTNACC	1 cut(s)	575
EcoRII	CCWGG	2 cut(s)	527, 819
EcoT38I	GRGCYC	1 cut(s)	513
Esp3I	CGTCTC	1 cut(s)	272
FaeI	CATG	4 cut(s)	62, 361, 427, 609
FalI	AAGNNNNNCTT	2 cut(s)	335, 367
FatI	CATG	4 cut(s)	58, 357, 423, 605
FbaI	TGATCA	1 cut(s)	567
FokI	GGATG	2 cut(s)	296, 825
FriOI	GRGCYC	1 cut(s)	513
FspBI	CTAG	4 cut(s)	539, 581, 860, 918
GlaI	GCGC	1 cut(s)	274
GsuI	CTGGAG	1 cut(s)	527
HaeII	RGCGCY	1 cut(s)	276
HaeIII	GGCC	2 cut(s)	90, 603
HhaI	GCGC	1 cut(s)	275
Hin1II	CATG	4 cut(s)	62, 361, 427, 609
Hin6I	GCGC	1 cut(s)	273
HinP1I	GCGC	1 cut(s)	273
HindIII	AAGCTT	2 cut(s)	263, 486
HinfI	GANTC	1 cut(s)	657
HphI	GGTGA	4 cut(s)	17, 380, 587, 652
Hpy166II	GTNNAC	3 cut(s)	313, 478, 642
Hpy188I	TCNGA	4 cut(s)	396, 829, 869, 967
Hpy188III	TCNNGA	1 cut(s)	206
Hpy8I	GTNNAC	3 cut(s)	313, 478, 642
HpyAV	CCTTC	6 cut(s)	365, 409, 590, 640, 662, 801
HpyCH4III	ACNGT	4 cut(s)	409, 475, 482, 646
HpyCH4V	TGCA	6 cut(s)	58, 184, 215, 383, 459, 732
HpyF10VI	GCNNNNNNNGC	1 cut(s)	695
HpyF3I	CTNAG	5 cut(s)	276, 395, 534, 845, 866
Hsp92II	CATG	4 cut(s)	62, 361, 427, 609
HspAI	GCGC	1 cut(s)	273
Ksp22I	TGATCA	1 cut(s)	567
Kzo9I	GATC	5 cut(s)	496, 567, 816, 882, 886
LguI	GCTCTTC	2 cut(s)	110, 546
LmnI	GCTCC	3 cut(s)	159, 191, 508
LweI	GCATC	2 cut(s)	357, 514
MaeI	CTAG	4 cut(s)	539, 581, 860, 918
MaeIII	GTNAC	3 cut(s)	428, 575, 679
MalI	GATC	5 cut(s)	498, 569, 818, 884, 888
MboI	GATC	5 cut(s)	496, 567, 816, 882, 886
MboII	GAAGA	6 cut(s)	127, 146, 155, 343, 563, 748
MflI	RGATCY	1 cut(s)	816
MhlI	GDGCHC	1 cut(s)	513
MluCI	AATT	6 cut(s)	138, 148, 252, 287, 702, 870
MlyI	GAGTC	1 cut(s)	651
MseI	TTAA	2 cut(s)	171, 873
MslI	CAYNNNNRTG	1 cut(s)	63
MspR9I	CCNGG	2 cut(s)	529, 821
MvaI	CCWGG	2 cut(s)	529, 821
MwoI	GCNNNNNNNGC	1 cut(s)	695
NdeII	GATC	5 cut(s)	496, 567, 816, 882, 886
NlaIII	CATG	4 cut(s)	62, 361, 427, 609
NlaIV	GGNNCC	2 cut(s)	28, 818
NmeAIII	GCCGAG	1 cut(s)	877
NmuCI	GTSAC	3 cut(s)	428, 575, 679
NspI	RCATGY	1 cut(s)	62
PciSI	GCTCTTC	2 cut(s)	110, 546
Ple19I	CGATCG	1 cut(s)	889
PleI	GAGTC	1 cut(s)	651
PpsI	GAGTC	1 cut(s)	651
PpuMI	RGGWCCY	1 cut(s)	692
PsiI	TTATAA	1 cut(s)	612
Psp124BI	GAGCTC	1 cut(s)	513
Psp5II	RGGWCCY	1 cut(s)	692
Psp6I	CCWGG	2 cut(s)	527, 819
PspEI	GGTNACC	1 cut(s)	575
PspGI	CCWGG	2 cut(s)	527, 819
PspN4I	GGNNCC	2 cut(s)	28, 818
PspPI	GGNCC	3 cut(s)	88, 602, 692
PspPPI	RGGWCCY	1 cut(s)	692
PstNI	CAGNNNCTG	1 cut(s)	695
PsuI	RGATCY	1 cut(s)	816
PvuI	CGATCG	1 cut(s)	889
RsaI	GTAC	1 cut(s)	560
RsaNI	GTAC	1 cut(s)	559
RseI	CAYNNNNRTG	1 cut(s)	63
SacI	GAGCTC	1 cut(s)	513
SapI	GCTCTTC	2 cut(s)	110, 546
SaqAI	TTAA	2 cut(s)	171, 873
Sau3AI	GATC	5 cut(s)	496, 567, 816, 882, 886
Sau96I	GGNCC	3 cut(s)	88, 602, 692
SchI	GAGTC	1 cut(s)	651
ScrFI	CCNGG	2 cut(s)	529, 821
SduI	GDGCHC	1 cut(s)	513
SfaNI	GCATC	2 cut(s)	357, 514
SinI	GGWCC	1 cut(s)	692
SmiMI	CAYNNNNRTG	1 cut(s)	63
SmlI	CTYRAG	1 cut(s)	950
SmoI	CTYRAG	1 cut(s)	950
Sse9I	AATT	6 cut(s)	138, 148, 252, 287, 702, 870
SspMI	CTAG	4 cut(s)	539, 581, 860, 918
SstI	GAGCTC	1 cut(s)	513
StyD4I	CCNGG	2 cut(s)	527, 819
TaaI	ACNGT	4 cut(s)	409, 475, 482, 646
TaqI	TCGA	3 cut(s)	885, 895, 972
TasI	AATT	6 cut(s)	138, 148, 252, 287, 702, 870
Tru1I	TTAA	2 cut(s)	171, 873
Tru9I	TTAA	2 cut(s)	171, 873
TscAI	CASTG	2 cut(s)	102, 487
TseFI	GTSAC	3 cut(s)	428, 575, 679
Tsp45I	GTSAC	3 cut(s)	428, 575, 679
TspDTI	ATGAA	3 cut(s)	300, 343, 925
TspGWI	ACGGA	1 cut(s)	296
TspRI	CASTG	2 cut(s)	102, 487
VpaK11BI	GGWCC	1 cut(s)	692
XapI	RAATTY	3 cut(s)	148, 287, 702
XceI	RCATGY	1 cut(s)	62
XspI	CTAG	4 cut(s)	539, 581, 860, 918

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.