Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0016306

Physical Location & Seq

Genomic Coordinates Reverse (-)

12076511 .. 12078352

Gene Structure 1842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g16140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGATCAATGATAACAAATTAAATTGCAGCAAATTACTCATTCCATTTTCTCTTCTGTATTTGCAGGCTTTAGTGATTGATGGAAAGCTTCAAAGTGCTGAGACAGATGAATTTATCTACCATGAATGTCTTGTGCACCCGCCACTTCTTCATCATCCCAAGTACCTAAATTCTCTGTTCCATATCAATAAAATTTATGTCGTTTCGCCGAGTCCAAAGAGCATCTTCATCATGGGAGGAGGTGAAGGCTCCACTGCAAGAGAACTTCTGAGACACAGGACTGTGGAGAAGGTTGTCATGTGTGACATTGATGAGGAGGTGGTAGGGTTCTGCAAGTCATATTTGATTGTAAACAGTGAAGCTTTCTGTGATCCAAGATTGGAGCTCATCATCAATGATGCCAGGGCTGAGCTAGAACACAGAGAAGAGCAGTATGATGTGATCATTGGTGACCTTGCAGACCCAATAGAAGGAGGTCCATGTTATAAACTCTACACCAAATCCTTCTATGAATTAATTGTCAAGCCTAGACTCAGCAAGGAAGGCATTTTTGTCACACAGGCAGGTCCTGCTGGAATTTTCAGCCATACAGAAGTTTTCTCCTGCATTTACAATACTTTGAGGCAGGTCTTCAGATATGTTGTGCCTTATTCAGCTCATATTCCTTCTTATGCCGATATATGGGGATGGATCATGGCCTCAGATACCCCTATTGAGCTGAGTGCTGATGAATTAGACCTCAGAATTAAACAGAGGATCACAGGGGAGAACAGATACCTAGATGGAAAAACATTTTCATCAGCCTCTACCTTGAGCAAAGCTGTTCGGAAATCGATGGTCAATGAGACTCATGTGTATACAGAAGGAACGGCAAGGTTCATATATGGCCATGGCCATGGCACTGCCTACAAACTCGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0008150 GO:0009888 GO:0009914 GO:0009926 GO:0009987 GO:0010087 GO:0010089 GO:0010487 GO:0010817 GO:0016740 GO:0016765 GO:0016768 GO:0030154 GO:0032502 GO:0044424 GO:0044464 GO:0048759 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0060918 GO:0065007 GO:0065008 GO:1905177

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Spermine_synt_N Spermine_synth

Protein Analysis

307

Amino Acids

34.69

Weight (kDa)

5.85

Isoelectric Point (pI)

33.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Spermine_synth	PF01564	37 - 233	8.3e-41	Spermine/spermidine synthase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016306)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15320 FvH4_4g15320
malus_domestica	MD13G1191500.v1.1 MD16G1191600.v1.1
prunus_persica	Prupe.1G011700_v2.0.a1
pyrus_communis	pycom13g16430 pycom16g16140
rosa_chinensis	RchiOBHm_Chr4g0416531
rosa_laevigata	RLG00000007976
rosa_roxburghii	Rroxscaffold_5G00360410
rosa_rugosa	Rorug04G0142400
rosa_samantha	Rh4AG205000 Rh4BG202700 Rh4DG202200
rosa_wichuraiana	Rw4G017350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	486
Acc36I	ACCTGC	2 cut(s)	554, 616
AccI	GTMKAC	1 cut(s)	857
AciI	CCGC	1 cut(s)	140
AclWI	GGATC	3 cut(s)	365, 698, 764
AcoI	YGGCCR	2 cut(s)	886, 892
AcsI	RAATTY	4 cut(s)	110, 169, 192, 576
AcuI	CTGAAG	1 cut(s)	616
AfaI	GTAC	1 cut(s)	164
AfiI	CCNNNNNNNGG	2 cut(s)	470, 681
AgsI	TTSAA	1 cut(s)	92
AjnI	CCWGG	1 cut(s)	401
AluBI	AGCT	7 cut(s)	88, 362, 385, 412, 656, 718, 821
AluI	AGCT	7 cut(s)	88, 362, 385, 412, 656, 718, 821
Alw21I	GWGCWC	2 cut(s)	138, 387
Alw26I	GTCTC	3 cut(s)	95, 265, 839
Alw44I	GTGCAC	1 cut(s)	134
AlwI	GGATC	3 cut(s)	365, 698, 764
AlwNI	CAGNNNCTG	1 cut(s)	569
Ama87I	CYCGRG	1 cut(s)	914
AoxI	GGCC	3 cut(s)	696, 886, 892
ApaLI	GTGCAC	1 cut(s)	134
ApeKI	GCWGC	1 cut(s)	27
ApoI	RAATTY	4 cut(s)	110, 169, 192, 576
AseI	ATTAAT	1 cut(s)	515
AspS9I	GGNCC	2 cut(s)	476, 566
AsuHPI	GGTGA	2 cut(s)	254, 461
AvaI	CYCGRG	1 cut(s)	914
AvaII	GGWCC	2 cut(s)	476, 566
BaeGI	GKGCMC	1 cut(s)	138
BalI	TGGCCA	2 cut(s)	888, 894
BanII	GRGCYC	1 cut(s)	387
BbsI	GAAGAC	1 cut(s)	622
Bbv12I	GWGCWC	2 cut(s)	138, 387
BbvI	GCAGC	1 cut(s)	39
BccI	CCATC	4 cut(s)	74, 681, 776, 829
BceAI	ACGGC	1 cut(s)	885
BciT130I	CCWGG	1 cut(s)	403
BclI	TGATCA	2 cut(s)	3, 441
BcoDI	GTCTC	3 cut(s)	95, 265, 839
BfaI	CTAG	3 cut(s)	413, 528, 779
BfuAI	ACCTGC	2 cut(s)	554, 616
BisI	GCNGC	1 cut(s)	28
BlpI	GCTNAGC	1 cut(s)	408
BlsI	GCNGC	1 cut(s)	29
Bme1390I	CCNGG	1 cut(s)	403
Bme18I	GGWCC	2 cut(s)	476, 566
BmeT110I	CYCGRG	1 cut(s)	914
BmgT120I	GGNCC	2 cut(s)	476, 566
BmiI	GGNNCC	1 cut(s)	250
BmrFI	CCNGG	1 cut(s)	403
BmsI	GCATC	2 cut(s)	231, 388
BpiI	GAAGAC	1 cut(s)	622
Bpu1102I	GCTNAGC	1 cut(s)	408
BpuEI	CTTGAG	1 cut(s)	832
Bsa29I	ATCGAT	1 cut(s)	833
BsaJI	CCNNGG	3 cut(s)	402, 889, 895
Bsc4I	CCNNNNNNNGG	2 cut(s)	470, 681
BseBI	CCWGG	1 cut(s)	403
BseCI	ATCGAT	1 cut(s)	833
BseDI	CCNNGG	3 cut(s)	402, 889, 895
BseGI	GGATG	2 cut(s)	154, 692
BseLI	CCNNNNNNNGG	2 cut(s)	470, 681
BseMII	CTCAG	7 cut(s)	90, 260, 399, 547, 710, 714, 754
BseRI	GAGGAG	2 cut(s)	252, 329
BseSI	GKGCMC	1 cut(s)	138
BseXI	GCAGC	1 cut(s)	39
BshFI	GGCC	3 cut(s)	698, 888, 894
BshVI	ATCGAT	1 cut(s)	833
BsiHKAI	GWGCWC	2 cut(s)	138, 387
BsiHKCI	CYCGRG	1 cut(s)	914
BslI	CCNNNNNNNGG	2 cut(s)	470, 681
BsmAI	GTCTC	3 cut(s)	95, 265, 839
BsnI	GGCC	3 cut(s)	698, 888, 894
BsoBI	CYCGRG	1 cut(s)	914
Bsp1286I	GDGCHC	2 cut(s)	138, 387
Bsp143I	GATC	5 cut(s)	3, 370, 441, 690, 756
Bsp1720I	GCTNAGC	1 cut(s)	408
Bsp19I	CCATGG	2 cut(s)	889, 895
BspACI	CCGC	1 cut(s)	140
BspANI	GGCC	3 cut(s)	698, 888, 894
BspCNI	CTCAG	7 cut(s)	91, 261, 400, 546, 711, 713, 753
BspDI	ATCGAT	1 cut(s)	833
BspLI	GGNNCC	1 cut(s)	250
BspMI	ACCTGC	2 cut(s)	554, 616
BspPI	GGATC	3 cut(s)	365, 698, 764
BspQI	GCTCTTC	1 cut(s)	420
BssECI	CCNNGG	3 cut(s)	402, 889, 895
BssMI	GATC	5 cut(s)	3, 370, 441, 690, 756
BssNAI	GTATAC	1 cut(s)	858
BssT1I	CCWWGG	2 cut(s)	889, 895
Bst1107I	GTATAC	1 cut(s)	858
Bst2UI	CCWGG	1 cut(s)	403
Bst4CI	ACNGT	2 cut(s)	283, 356
Bst6I	CTCTTC	2 cut(s)	57, 420
BstAPI	GCANNNNNTGC	1 cut(s)	569
BstC8I	GCNNGC	1 cut(s)	66
BstDEI	CTNAG	7 cut(s)	99, 269, 408, 533, 700, 719, 740
BstDSI	CCRYGG	2 cut(s)	889, 895
BstEII	GGTNACC	1 cut(s)	449
BstF5I	GGATG	2 cut(s)	154, 692
BstKTI	GATC	5 cut(s)	6, 373, 444, 693, 759
BstMAI	GTCTC	3 cut(s)	95, 265, 839
BstMBI	GATC	5 cut(s)	3, 370, 441, 690, 756
BstMWI	GCNNNNNNNGC	2 cut(s)	543, 569
BstNI	CCWGG	1 cut(s)	403
BstPI	GGTNACC	1 cut(s)	449
BstSCI	CCNGG	1 cut(s)	401
BstSLI	GKGCMC	1 cut(s)	138
BstV1I	GCAGC	1 cut(s)	39
BstV2I	GAAGAC	1 cut(s)	622
BstXI	CCANNNNNNTGG	1 cut(s)	896
BstZ17I	GTATAC	1 cut(s)	858
Bsu15I	ATCGAT	1 cut(s)	833
BsuRI	GGCC	3 cut(s)	698, 888, 894
BsuTUI	ATCGAT	1 cut(s)	833
BtgI	CCRYGG	2 cut(s)	889, 895
BtsCI	GGATG	2 cut(s)	154, 692
BtsI	GCAGTG	2 cut(s)	252, 900
BtsIMutI	CAGTG	3 cut(s)	252, 361, 900
BveI	ACCTGC	2 cut(s)	554, 616
Cac8I	GCNNGC	1 cut(s)	66
CaiI	CAGNNNCTG	1 cut(s)	569
Cfr13I	GGNCC	2 cut(s)	476, 566
ClaI	ATCGAT	1 cut(s)	833
Csp6I	GTAC	1 cut(s)	163
CviAII	CATG	8 cut(s)	122, 232, 298, 480, 694, 851, 890, 896
CviQI	GTAC	1 cut(s)	163
DdeI	CTNAG	7 cut(s)	99, 269, 408, 533, 700, 719, 740
DpnI	GATC	5 cut(s)	5, 372, 443, 692, 758
DpnII	GATC	5 cut(s)	3, 370, 441, 690, 756
EaeI	YGGCCR	2 cut(s)	886, 892
Eam1104I	CTCTTC	2 cut(s)	57, 420
EarI	CTCTTC	2 cut(s)	57, 420
Ecl136II	GAGCTC	1 cut(s)	385
Eco130I	CCWWGG	2 cut(s)	889, 895
Eco24I	GRGCYC	1 cut(s)	387
Eco47I	GGWCC	2 cut(s)	476, 566
Eco53kI	GAGCTC	1 cut(s)	385
Eco57I	CTGAAG	1 cut(s)	616
Eco88I	CYCGRG	1 cut(s)	914
Eco91I	GGTNACC	1 cut(s)	449
EcoICRI	GAGCTC	1 cut(s)	385
EcoO109I	RGGNCCY	1 cut(s)	566
EcoO65I	GGTNACC	1 cut(s)	449
EcoRII	CCWGG	1 cut(s)	401
EcoT14I	CCWWGG	2 cut(s)	889, 895
EcoT38I	GRGCYC	1 cut(s)	387
ErhI	CCWWGG	2 cut(s)	889, 895
FaeI	CATG	8 cut(s)	125, 235, 301, 483, 697, 854, 893, 899
FalI	AAGNNNNNCTT	2 cut(s)	209, 241
FatI	CATG	8 cut(s)	121, 231, 297, 479, 693, 850, 889, 895
FauI	CCCGC	1 cut(s)	147
FbaI	TGATCA	2 cut(s)	3, 441
FblI	GTMKAC	1 cut(s)	857
Fnu4HI	GCNGC	1 cut(s)	28
FokI	GGATG	2 cut(s)	141, 699
FriOI	GRGCYC	1 cut(s)	387
Fsp4HI	GCNGC	1 cut(s)	28
FspBI	CTAG	3 cut(s)	413, 528, 779
GluI	GCNGC	1 cut(s)	28
HaeIII	GGCC	3 cut(s)	698, 888, 894
Hin1II	CATG	8 cut(s)	125, 235, 301, 483, 697, 854, 893, 899
HindIII	AAGCTT	2 cut(s)	86, 360
HinfI	GANTC	3 cut(s)	211, 531, 847
HphI	GGTGA	2 cut(s)	254, 461
Hpy166II	GTNNAC	3 cut(s)	136, 352, 858
Hpy188I	TCNGA	5 cut(s)	270, 635, 703, 743, 828
Hpy8I	GTNNAC	3 cut(s)	136, 352, 858
HpyAV	CCTTC	7 cut(s)	239, 283, 464, 514, 536, 675, 857
HpyCH4III	ACNGT	2 cut(s)	283, 356
HpyCH4V	TGCA	7 cut(s)	27, 64, 136, 257, 333, 458, 606
HpyF10VI	GCNNNNNNNGC	2 cut(s)	543, 569
HpyF3I	CTNAG	7 cut(s)	99, 269, 408, 533, 700, 719, 740
Hsp92II	CATG	8 cut(s)	125, 235, 301, 483, 697, 854, 893, 899
Ksp22I	TGATCA	2 cut(s)	3, 441
Kzo9I	GATC	5 cut(s)	3, 370, 441, 690, 756
LguI	GCTCTTC	1 cut(s)	420
LmnI	GCTCC	2 cut(s)	254, 382
Lsp1109I	GCAGC	1 cut(s)	39
LweI	GCATC	2 cut(s)	231, 388
MaeI	CTAG	3 cut(s)	413, 528, 779
MaeIII	GTNAC	3 cut(s)	302, 449, 553
MalI	GATC	5 cut(s)	5, 372, 443, 692, 758
MboI	GATC	5 cut(s)	3, 370, 441, 690, 756
MboII	GAAGA	5 cut(s)	44, 140, 217, 437, 622
MhlI	GDGCHC	2 cut(s)	138, 387
MlsI	TGGCCA	2 cut(s)	888, 894
MluNI	TGGCCA	2 cut(s)	888, 894
MlyI	GAGTC	3 cut(s)	220, 525, 841
Mox20I	TGGCCA	2 cut(s)	888, 894
MscI	TGGCCA	2 cut(s)	888, 894
MseI	TTAA	3 cut(s)	20, 515, 747
MslI	CAYNNNNRTG	1 cut(s)	894
Msp20I	TGGCCA	2 cut(s)	888, 894
MspR9I	CCNGG	1 cut(s)	403
MvaI	CCWGG	1 cut(s)	403
MwoI	GCNNNNNNNGC	2 cut(s)	543, 569
NcoI	CCATGG	2 cut(s)	889, 895
NdeII	GATC	5 cut(s)	3, 370, 441, 690, 756
NlaIII	CATG	8 cut(s)	125, 235, 301, 483, 697, 854, 893, 899
NlaIV	GGNNCC	1 cut(s)	250
NmeAIII	GCCGAG	1 cut(s)	234
NmuCI	GTSAC	3 cut(s)	302, 449, 553
PaeR7I	CTCGAG	1 cut(s)	914
PciSI	GCTCTTC	1 cut(s)	420
PkrI	GCNGC	1 cut(s)	29
PleI	GAGTC	3 cut(s)	219, 525, 841
PpsI	GAGTC	3 cut(s)	219, 525, 841
PpuMI	RGGWCCY	1 cut(s)	566
PshBI	ATTAAT	1 cut(s)	515
PsiI	TTATAA	1 cut(s)	486
Psp124BI	GAGCTC	1 cut(s)	387
Psp5II	RGGWCCY	1 cut(s)	566
Psp6I	CCWGG	1 cut(s)	401
PspEI	GGTNACC	1 cut(s)	449
PspGI	CCWGG	1 cut(s)	401
PspN4I	GGNNCC	1 cut(s)	250
PspPI	GGNCC	2 cut(s)	476, 566
PspPPI	RGGWCCY	1 cut(s)	566
PspXI	VCTCGAGB	1 cut(s)	914
PstNI	CAGNNNCTG	1 cut(s)	569
RsaI	GTAC	1 cut(s)	164
RsaNI	GTAC	1 cut(s)	163
RseI	CAYNNNNRTG	1 cut(s)	894
SacI	GAGCTC	1 cut(s)	387
SapI	GCTCTTC	1 cut(s)	420
SaqAI	TTAA	3 cut(s)	20, 515, 747
SatI	GCNGC	1 cut(s)	28
Sau3AI	GATC	5 cut(s)	3, 370, 441, 690, 756
Sau96I	GGNCC	2 cut(s)	476, 566
SchI	GAGTC	3 cut(s)	220, 525, 841
ScrFI	CCNGG	1 cut(s)	403
SduI	GDGCHC	2 cut(s)	138, 387
SfaNI	GCATC	2 cut(s)	231, 388
Sfr274I	CTCGAG	1 cut(s)	914
SinI	GGWCC	2 cut(s)	476, 566
SlaI	CTCGAG	1 cut(s)	914
SmiMI	CAYNNNNRTG	1 cut(s)	894
SmlI	CTYRAG	2 cut(s)	811, 914
SmoI	CTYRAG	2 cut(s)	811, 914
SsiI	CCGC	1 cut(s)	140
SspMI	CTAG	3 cut(s)	413, 528, 779
SstI	GAGCTC	1 cut(s)	387
StyD4I	CCNGG	1 cut(s)	401
StyI	CCWWGG	2 cut(s)	889, 895
TaaI	ACNGT	2 cut(s)	283, 356
TaqI	TCGA	2 cut(s)	833, 915
Tru1I	TTAA	3 cut(s)	20, 515, 747
Tru9I	TTAA	3 cut(s)	20, 515, 747
TscAI	CASTG	3 cut(s)	259, 361, 907
TseFI	GTSAC	3 cut(s)	302, 449, 553
TseI	GCWGC	1 cut(s)	27
Tsp45I	GTSAC	3 cut(s)	302, 449, 553
TspDTI	ATGAA	8 cut(s)	123, 138, 140, 217, 525, 744, 786, 868
TspRI	CASTG	3 cut(s)	259, 361, 907
VneI	GTGCAC	1 cut(s)	134
VpaK11BI	GGWCC	2 cut(s)	476, 566
VspI	ATTAAT	1 cut(s)	515
XapI	RAATTY	4 cut(s)	110, 169, 192, 576
XhoI	CTCGAG	1 cut(s)	914
XmiI	GTMKAC	1 cut(s)	857
XspI	CTAG	3 cut(s)	413, 528, 779

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.