FvH4_4g15620

Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0013033
Physical Location & Seq
Forward (+)
19477844 .. 19480118
2275 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g15620.t1

Sequence Viewer

Length: 1074 bp
ATGTTGTTGAGGAGAGCAACCAAATTCGCTTCAGCAGTATTTCCACATTTCATTTCAAAGGCTCCTATTTTTTGCTCAATTCCCATTTTTGATCACACGGCACGAGTTGCATACTACTCTAGTGGCTTTCGCCTCTCTCCATTGTTTCCCTCCGAACCTAAACCCCGGTCGGATAGTTATGATATTGAGCTTGTTGACGATGATTCATGGCAGGTTTCGTCAGGTTTGGTGCTGGCGGAACAAGGAAAGAAGGGGGCTGCATTGGAAGAGAGTTGCTTATCGGATAAAGTGGTTGATGAGCAGGTTGATACTTGCTCTCTACCTGTTGAGGGTGACCCGGATTTCGATGACATTGACAACTTGAGAGTTCGCGGCAGACTGTTCTATAAAATCAACCGCGATTCCAAAGAGTATGAAGAGTATAATTTCGACTTCCATCGTAGGAATAAGTCTTCCAAGAAGAAGGATGATCCAAAGGAGAGTAAAAAGAAGAAGGTTGATCCAAAGGAGAGTAATAGGAAGAGGGATGATGAAAAGGAGAGTAAGCAGAAGGTTAGTGGTTTAAAGGAAAGCAAAAGAGAGAACCCAATTCCTAAGTTTTCCGCCAGAAGTGAGAAACAATGTAGAGTTGTGGACAGCTCTCGGGTTGGTGAAGTGGATGCTGCTTGTGTTGACAAGAAGAAGCTGAGAACTCCGACCTATAATCAGCTCACTGGTCCTTTTCATGAGCCATTTTGTCTTGACGTGTACATATCAAAGGCTTCAGTTCGTGCTTGTATTGTTCACCGGTTCACCAGTAAGGTTGTTGCAGTGGCACATTCCATATCAAAGGACATGAAGTTCGACCTTGGTTCAACTAGGAATCCGGCTGCTTGTGCTGCTGTTGGGGAAGTTCTGGCTCAGAGGGCATTGGGGGATGATATCCATGATGTGATTTATACACCAAGGAAAGGGGAGAAGTTGGAGGGCAAGCTTCAAGTTGTAGTTCAGTCTCTAATTGATAATGGCGTTAATGTTAAGGTGAAGATCAAACAAAGAGCACGGAAGAAACTGACTTCCTTTTCTACAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L18p

Protein Analysis

358

Amino Acids

40.24

Weight (kDa)

9.21

Isoelectric Point (pI)

38.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L18p PF00861 246 - 338 2.3e-08 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013033)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22450 AT3G22450
fragaria_vesca FvH4_4g15620
malus_domestica MD13G1193200.v1.1 MD16G1194100.v1.1
prunus_persica Prupe.1G013800_v2.0.a1
pyrus_communis pycom13g16550 pycom16g16390
rosa_chinensis RchiOBHm_Chr4g0416191
rosa_laevigata RLG00000008007
rosa_multiflora Rmu_sc0001145.1_g000002
rosa_roxburghii Rroxscaffold_5G00360050
rosa_rugosa Rorug04G0139800
rosa_samantha Rh4AG201800 Rh4BG199200 Rh4CG214100 Rh4DG199000
rosa_wichuraiana Rw4G017060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 202, 292
AccII CGCG 2 cut(s) 372, 399
AciI CCGC 4 cut(s) 236, 372, 397, 603
AclWI GGATC 2 cut(s) 464, 494
AcsI RAATTY 1 cut(s) 23
AcuI CTGAAG 2 cut(s) 15, 747
AfaI GTAC 1 cut(s) 749
AfiI CCNNNNNNNGG 2 cut(s) 329, 950
AflIII ACRYGT 1 cut(s) 744
AgeI ACCGGT 1 cut(s) 786
AgsI TTSAA 3 cut(s) 57, 855, 977
AjiI CACGTC 1 cut(s) 745
AloI GAACNNNNNNTCC 2 cut(s) 824, 856
AluBI AGCT 5 cut(s) 190, 639, 685, 709, 973
AluI AGCT 5 cut(s) 190, 639, 685, 709, 973
Alw21I GWGCWC 1 cut(s) 1042
Alw26I GTCTC 1 cut(s) 996
AlwI GGATC 2 cut(s) 464, 494
Ama87I CYCGRG 1 cut(s) 642
ApeKI GCWGC 4 cut(s) 257, 662, 869, 878
ApoI RAATTY 1 cut(s) 23
ArsI GACNNNNNNTTYG 4 cut(s) 326, 358, 824, 856
AsiGI ACCGGT 1 cut(s) 786
AspS9I GGNCC 1 cut(s) 716
AsuC2I CCSGG 2 cut(s) 166, 338
AsuHPI GGTGA 5 cut(s) 344, 662, 776, 784, 1033
AvaI CYCGRG 1 cut(s) 642
AvaII GGWCC 1 cut(s) 716
BauI CACGAG 1 cut(s) 102
BbsI GAAGAC 1 cut(s) 444
Bbv12I GWGCWC 1 cut(s) 1042
BbvI GCAGC 4 cut(s) 244, 649, 856, 865
BccI CCATC 1 cut(s) 444
BceAI ACGGC 1 cut(s) 114
BclI TGATCA 1 cut(s) 91
BcnI CCSGG 2 cut(s) 166, 338
BcoDI GTCTC 1 cut(s) 996
BfaI CTAG 2 cut(s) 120, 858
BfmI CTRYAG 1 cut(s) 1065
BfuAI ACCTGC 2 cut(s) 202, 292
BisI GCNGC 5 cut(s) 258, 373, 663, 870, 879
BlsI GCNGC 5 cut(s) 259, 374, 664, 871, 880
Bme1390I CCNGG 2 cut(s) 166, 338
Bme18I GGWCC 1 cut(s) 716
BmeT110I CYCGRG 1 cut(s) 642
BmgBI CACGTC 1 cut(s) 745
BmgT120I GGNCC 1 cut(s) 716
BmiI GGNNCC 1 cut(s) 63
BmrFI CCNGG 2 cut(s) 166, 338
BmsI GCATC 1 cut(s) 649
BpiI GAAGAC 1 cut(s) 444
BpuEI CTTGAG 1 cut(s) 382
BpuMI CCSGG 2 cut(s) 166, 338
BsaJI CCNNGG 3 cut(s) 164, 847, 944
BsaWI WCCGGW 1 cut(s) 786
Bsc4I CCNNNNNNNGG 2 cut(s) 329, 950
Bse118I RCCGGY 1 cut(s) 786
Bse1I ACTGG 2 cut(s) 718, 795
BseDI CCNNGG 3 cut(s) 164, 847, 944
BseGI GGATG 4 cut(s) 472, 532, 664, 922
BseLI CCNNNNNNNGG 2 cut(s) 329, 950
BseMII CTCAG 2 cut(s) 677, 914
BseNI ACTGG 2 cut(s) 718, 795
BseRI GAGGAG 1 cut(s) 25
BseXI GCAGC 4 cut(s) 244, 649, 856, 865
Bsh1236I CGCG 2 cut(s) 372, 399
Bsh1285I CGRYCG 1 cut(s) 170
BshTI ACCGGT 1 cut(s) 786
BsiEI CGRYCG 1 cut(s) 170
BsiHKAI GWGCWC 1 cut(s) 1042
BsiHKCI CYCGRG 1 cut(s) 642
BsiSI CCGG 4 cut(s) 166, 338, 787, 866
BslI CCNNNNNNNGG 2 cut(s) 329, 950
BsmAI GTCTC 1 cut(s) 996
BsoBI CYCGRG 1 cut(s) 642
Bsp1286I GDGCHC 1 cut(s) 1042
Bsp1407I TGTACA 1 cut(s) 747
Bsp143I GATC 4 cut(s) 91, 469, 499, 1026
BspACI CCGC 4 cut(s) 236, 372, 397, 603
BspCNI CTCAG 2 cut(s) 678, 913
BspFNI CGCG 2 cut(s) 372, 399
BspHI TCATGA 1 cut(s) 724
BspLI GGNNCC 1 cut(s) 63
BspMI ACCTGC 2 cut(s) 202, 292
BspPI GGATC 2 cut(s) 464, 494
BsrFI RCCGGY 1 cut(s) 786
BsrGI TGTACA 1 cut(s) 747
BsrI ACTGG 2 cut(s) 718, 795
BssAI RCCGGY 1 cut(s) 786
BssECI CCNNGG 3 cut(s) 164, 847, 944
BssMI GATC 4 cut(s) 91, 469, 499, 1026
BssSI CACGAG 1 cut(s) 102
BssT1I CCWWGG 2 cut(s) 847, 944
Bst2BI CACGAG 1 cut(s) 102
Bst4CI ACNGT 1 cut(s) 381
Bst6I CTCTTC 3 cut(s) 261, 411, 515
BstAPI GCANNNNNTGC 1 cut(s) 107
BstAUI TGTACA 1 cut(s) 747
BstC8I GCNNGC 2 cut(s) 234, 971
BstDEI CTNAG 3 cut(s) 594, 686, 900
BstEII GGTNACC 1 cut(s) 332
BstF5I GGATG 4 cut(s) 472, 532, 664, 922
BstFNI CGCG 2 cut(s) 372, 399
BstKTI GATC 4 cut(s) 94, 472, 502, 1029
BstMAI GTCTC 1 cut(s) 996
BstMBI GATC 4 cut(s) 91, 469, 499, 1026
BstMCI CGRYCG 1 cut(s) 170
BstMWI GCNNNNNNNGC 4 cut(s) 107, 875, 878, 905
BstPI GGTNACC 1 cut(s) 332
BstSCI CCNGG 2 cut(s) 164, 336
BstSFI CTRYAG 1 cut(s) 1065
BstUI CGCG 2 cut(s) 372, 399
BstV1I GCAGC 4 cut(s) 244, 649, 856, 865
BstV2I GAAGAC 1 cut(s) 444
BtrI CACGTC 1 cut(s) 745
BtsCI GGATG 4 cut(s) 472, 532, 664, 922
BtsI GCAGTG 1 cut(s) 816
BtsIMutI CAGTG 2 cut(s) 711, 816
BveI ACCTGC 2 cut(s) 202, 292
Cac8I GCNNGC 2 cut(s) 234, 971
CciI TCATGA 1 cut(s) 724
Cfr10I RCCGGY 1 cut(s) 786
Cfr13I GGNCC 1 cut(s) 716
Csp6I GTAC 1 cut(s) 748
CspAI ACCGGT 1 cut(s) 786
CviAII CATG 4 cut(s) 207, 725, 835, 926
CviQI GTAC 1 cut(s) 748
DdeI CTNAG 3 cut(s) 594, 686, 900
DpnI GATC 4 cut(s) 93, 471, 501, 1028
DpnII GATC 4 cut(s) 91, 469, 499, 1026
DraI TTTAAA 1 cut(s) 564
Eam1104I CTCTTC 3 cut(s) 261, 411, 515
EarI CTCTTC 3 cut(s) 261, 411, 515
EciI GGCGGA 2 cut(s) 251, 592
Eco130I CCWWGG 2 cut(s) 847, 944
Eco32I GATATC 1 cut(s) 922
Eco47I GGWCC 1 cut(s) 716
Eco57I CTGAAG 2 cut(s) 15, 747
Eco88I CYCGRG 1 cut(s) 642
Eco91I GGTNACC 1 cut(s) 332
EcoO65I GGTNACC 1 cut(s) 332
EcoRV GATATC 1 cut(s) 922
EcoT14I CCWWGG 2 cut(s) 847, 944
ErhI CCWWGG 2 cut(s) 847, 944
FaeI CATG 4 cut(s) 210, 728, 838, 929
FatI CATG 4 cut(s) 206, 724, 834, 925
FbaI TGATCA 1 cut(s) 91
Fnu4HI GCNGC 5 cut(s) 258, 373, 663, 870, 879
FokI GGATG 4 cut(s) 479, 539, 671, 929
Fsp4HI GCNGC 5 cut(s) 258, 373, 663, 870, 879
FspBI CTAG 2 cut(s) 120, 858
GluI GCNGC 5 cut(s) 258, 373, 663, 870, 879
HapII CCGG 4 cut(s) 166, 338, 787, 866
Hin1II CATG 4 cut(s) 210, 728, 838, 929
HincII GTYRAC 2 cut(s) 196, 673
HindII GTYRAC 2 cut(s) 196, 673
HindIII AAGCTT 1 cut(s) 971
HinfI GANTC 3 cut(s) 203, 401, 862
HpaII CCGG 4 cut(s) 166, 338, 787, 866
HphI GGTGA 5 cut(s) 344, 662, 776, 784, 1033
Hpy166II GTNNAC 6 cut(s) 196, 634, 673, 748, 784, 792
Hpy188I TCNGA 5 cut(s) 154, 172, 283, 696, 903
Hpy188III TCNNGA 2 cut(s) 725, 740
Hpy8I GTNNAC 6 cut(s) 196, 634, 673, 748, 784, 792
HpyAV CCTTC 4 cut(s) 244, 457, 487, 544
HpyCH4III ACNGT 1 cut(s) 381
HpyCH4IV ACGT 1 cut(s) 744
HpyCH4V TGCA 3 cut(s) 110, 260, 809
HpyF10VI GCNNNNNNNGC 4 cut(s) 107, 875, 878, 905
HpyF3I CTNAG 3 cut(s) 594, 686, 900
HpySE526I ACGT 1 cut(s) 744
Hsp92II CATG 4 cut(s) 210, 728, 838, 929
Ksp22I TGATCA 1 cut(s) 91
Kzo9I GATC 4 cut(s) 91, 469, 499, 1026
LmnI GCTCC 1 cut(s) 67
Lsp1109I GCAGC 4 cut(s) 244, 649, 856, 865
LweI GCATC 1 cut(s) 649
MaeI CTAG 2 cut(s) 120, 858
MaeII ACGT 1 cut(s) 744
MaeIII GTNAC 1 cut(s) 332
MalI GATC 4 cut(s) 93, 471, 501, 1028
MboI GATC 4 cut(s) 91, 469, 499, 1026
MboII GAAGA 9 cut(s) 278, 428, 444, 472, 502, 532, 691, 1036, 1057
MhlI GDGCHC 1 cut(s) 1042
MluCI AATT 5 cut(s) 23, 78, 424, 588, 996
MmeI TCCRAC 3 cut(s) 150, 719, 942
MnlI CCTC 7 cut(s) 3, 143, 160, 322, 516, 897, 958
MseI TTAA 3 cut(s) 563, 1011, 1017
MspI CCGG 4 cut(s) 166, 338, 787, 866
MspR9I CCNGG 2 cut(s) 166, 338
MvnI CGCG 2 cut(s) 372, 399
MwoI GCNNNNNNNGC 4 cut(s) 107, 875, 878, 905
NciI CCSGG 2 cut(s) 166, 338
NdeII GATC 4 cut(s) 91, 469, 499, 1026
NlaIII CATG 4 cut(s) 210, 728, 838, 929
NlaIV GGNNCC 1 cut(s) 63
NmuCI GTSAC 1 cut(s) 332
PagI TCATGA 1 cut(s) 724
PfeI GAWTC 3 cut(s) 203, 401, 862
PinAI ACCGGT 1 cut(s) 786
PkrI GCNGC 5 cut(s) 259, 374, 664, 871, 880
PspEI GGTNACC 1 cut(s) 332
PspN4I GGNNCC 1 cut(s) 63
PspPI GGNCC 1 cut(s) 716
RsaI GTAC 1 cut(s) 749
RsaNI GTAC 1 cut(s) 748
SaqAI TTAA 3 cut(s) 563, 1011, 1017
SatI GCNGC 5 cut(s) 258, 373, 663, 870, 879
Sau3AI GATC 4 cut(s) 91, 469, 499, 1026
Sau96I GGNCC 1 cut(s) 716
ScrFI CCNGG 2 cut(s) 166, 338
SduI GDGCHC 1 cut(s) 1042
SfaNI GCATC 1 cut(s) 649
SfcI CTRYAG 1 cut(s) 1065
SinI GGWCC 1 cut(s) 716
SmlI CTYRAG 1 cut(s) 361
SmoI CTYRAG 1 cut(s) 361
Sse9I AATT 5 cut(s) 23, 78, 424, 588, 996
SsiI CCGC 4 cut(s) 236, 372, 397, 603
SspMI CTAG 2 cut(s) 120, 858
StyD4I CCNGG 2 cut(s) 164, 336
StyI CCWWGG 2 cut(s) 847, 944
TaaI ACNGT 1 cut(s) 381
TaiI ACGT 1 cut(s) 747
TaqI TCGA 3 cut(s) 345, 429, 843
TasI AATT 5 cut(s) 23, 78, 424, 588, 996
TatI WGTACW 1 cut(s) 747
TauI GCSGC 1 cut(s) 375
TfiI GAWTC 3 cut(s) 203, 401, 862
Tru1I TTAA 3 cut(s) 563, 1011, 1017
Tru9I TTAA 3 cut(s) 563, 1011, 1017
TscAI CASTG 2 cut(s) 718, 816
TseFI GTSAC 1 cut(s) 332
TseI GCWGC 4 cut(s) 257, 662, 869, 878
Tsp45I GTSAC 1 cut(s) 332
TspDTI ATGAA 6 cut(s) 40, 195, 429, 546, 713, 851
TspGWI ACGGA 1 cut(s) 1057
TspRI CASTG 2 cut(s) 718, 816
VpaK11BI GGWCC 1 cut(s) 716
XapI RAATTY 1 cut(s) 23
XspI CTAG 2 cut(s) 120, 858
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.