Rh4AG201800

Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0013033
Physical Location & Seq
Reverse (-)
48714072 .. 48715091
1020 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG201800.1

Sequence Viewer

Length: 1020 bp
ATGTTGTTGAGAAGAGGAATCAAATTCGCTTCGGCAGCATTTCCATATTTCCTTTCAAAGTCTCCTACTTGTTGCCGCAAAGCCACCACCACGGTTCCCATTTTCGATCATTCGGCATACTACTCTAGTGGCTTTAGCCTCTCTCCTTTGTTCCCCTCCGAACCCAAACCTCAGTCGGATAGTTATGATATTGAGCTTGTTGACGATGATGCATGGCGGGTTTCCTCAGGTTTGGCGCTAGCGGATCAGGGGACTGCATTGGAGGAACAAAGTTGCTTATCGGATGAAGCGGTTGATGAACCTGTTGATAGTTGCTCTCTACCTCTTGAGGGTGACCCGGATTTCGATGACATTGACAACATGAGAGTTCGGGGCAGATTGTTCTATAAAATCGACCGCGATTCCAAAGAGTTTGAGGAGTATAGTTTCGACTTCCATCGTAGGAACAAGTCTTCTAAGAAGAAGGATGATCCAAAGGAGAAGAAACAGAAGGTTAGTAGTAGTTTGAAGGAAAGCAAAAGAGACAACCCAATTCCTAAGTTTTCCTCCAGAAGTGAGAAACAGTGTAGAGTTGTTGTGGACAACTCTCGGCTGGGTGAAACGGGCGCTACTTGTGTTGAGAGGAAGAAGCTGAGAACTCCGACTTATAATCAGCTCACTGGTCCTTTCCACGAGCCGTTTTGCCTTGATGTTTACATCTCCAAGGCTTCAGTTCGTGCCTGCATTGTTCACAGGTTCACCAGTAAGGTTGTTGCCGTGGCACATTCCATATCGAAGGACATGAAGTTTGACCTTGGTTCAACTAGGAATGCAGCTGCTTGTGCTGCTGTTGGGGAAGTTCTGGCTCAGAGGGCATTGGGAGATGACATCCATGATGTGATTTACACACCAAGGAAAGGGGAAAGGTTGGAGGGCAAGCTTCAAATTGTGGTTCAGTCTCTAATTGATAACGGCATTAATGTGAAGGTGAAGATCAAACAAAGGGCGCGGAAGAGACCAACTTCCTTTTCCACAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L18p

Protein Analysis

339

Amino Acids

37.98

Weight (kDa)

8.82

Isoelectric Point (pI)

45.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L18p PF00861 228 - 320 1.6e-08 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013033)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22450 AT3G22450
fragaria_vesca FvH4_4g15620
malus_domestica MD13G1193200.v1.1 MD16G1194100.v1.1
prunus_persica Prupe.1G013800_v2.0.a1
pyrus_communis pycom13g16550 pycom16g16390
rosa_chinensis RchiOBHm_Chr4g0416191
rosa_laevigata RLG00000008007
rosa_multiflora Rmu_sc0001145.1_g000002
rosa_roxburghii Rroxscaffold_5G00360050
rosa_rugosa Rorug04G0139800
rosa_samantha Rh4AG201800 Rh4BG199200 Rh4CG214100 Rh4DG199000
rosa_wichuraiana Rw4G017060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 648
AccII CGCG 2 cut(s) 399, 988
AciI CCGC 6 cut(s) 76, 217, 242, 290, 397, 988
AclWI GGATC 2 cut(s) 252, 464
AcsI RAATTY 1 cut(s) 23
AcuI CTGAAG 1 cut(s) 693
AfiI CCNNNNNNNGG 2 cut(s) 329, 896
AgsI TTSAA 4 cut(s) 57, 508, 801, 923
AjuI GAANNNNNNNTTGG 1 cut(s) 991
AluBI AGCT 6 cut(s) 196, 631, 655, 815, 919, 1016
AluI AGCT 6 cut(s) 196, 631, 655, 815, 919, 1016
Alw26I GTCTC 4 cut(s) 66, 516, 942, 988
AlwI GGATC 2 cut(s) 252, 464
ApeKI GCWGC 4 cut(s) 35, 812, 815, 824
ApoI RAATTY 1 cut(s) 23
ArsI GACNNNNNNTTYG 4 cut(s) 326, 358, 770, 802
AseI ATTAAT 1 cut(s) 957
AspLEI GCGC 3 cut(s) 238, 608, 988
AspS9I GGNCC 1 cut(s) 662
AsuC2I CCSGG 1 cut(s) 338
AsuHPI GGTGA 4 cut(s) 344, 608, 730, 979
AsuNHI GCTAGC 1 cut(s) 238
AvaII GGWCC 1 cut(s) 662
AxyI CCTNAGG 1 cut(s) 226
BauI CACGAG 1 cut(s) 671
BbsI GAAGAC 1 cut(s) 444
BbvI GCAGC 4 cut(s) 47, 802, 811, 824
BccI CCATC 1 cut(s) 444
BceAI ACGGC 3 cut(s) 661, 740, 967
BcnI CCSGG 1 cut(s) 338
BcoDI GTCTC 4 cut(s) 66, 516, 942, 988
BfaI CTAG 3 cut(s) 126, 239, 804
BfoI RGCGCY 2 cut(s) 239, 609
BisI GCNGC 5 cut(s) 36, 76, 813, 816, 825
BlsI GCNGC 5 cut(s) 37, 77, 814, 817, 826
Bme1390I CCNGG 1 cut(s) 338
Bme18I GGWCC 1 cut(s) 662
BmgT120I GGNCC 1 cut(s) 662
BmiI GGNNCC 1 cut(s) 96
BmrFI CCNGG 1 cut(s) 338
BmsI GCATC 1 cut(s) 199
BmtI GCTAGC 1 cut(s) 242
BpiI GAAGAC 1 cut(s) 444
BpmI CTGGAG 1 cut(s) 532
BpuEI CTTGAG 1 cut(s) 347
BpuMI CCSGG 1 cut(s) 338
BsaI GGTCTC 1 cut(s) 988
BsaJI CCNNGG 5 cut(s) 90, 702, 756, 793, 890
Bsc4I CCNNNNNNNGG 2 cut(s) 329, 896
Bse1I ACTGG 2 cut(s) 664, 741
Bse21I CCTNAGG 1 cut(s) 226
BseDI CCNNGG 5 cut(s) 90, 702, 756, 793, 890
BseGI GGATG 3 cut(s) 289, 472, 867
BseLI CCNNNNNNNGG 2 cut(s) 329, 896
BseMII CTCAG 4 cut(s) 185, 240, 623, 860
BseNI ACTGG 2 cut(s) 664, 741
BseRI GAGGAG 1 cut(s) 431
BseXI GCAGC 4 cut(s) 47, 802, 811, 824
BseYI CCCAGC 1 cut(s) 592
Bsh1236I CGCG 2 cut(s) 399, 988
Bsh1285I CGRYCG 1 cut(s) 397
BsiEI CGRYCG 1 cut(s) 397
BsiSI CCGG 1 cut(s) 338
BslFI GGGAC 1 cut(s) 265
BslI CCNNNNNNNGG 2 cut(s) 329, 896
BsmAI GTCTC 4 cut(s) 66, 516, 942, 988
BsmFI GGGAC 1 cut(s) 265
BsmI GAATGC 1 cut(s) 814
Bso31I GGTCTC 1 cut(s) 988
Bsp143I GATC 4 cut(s) 106, 244, 469, 972
BspACI CCGC 6 cut(s) 76, 217, 242, 290, 397, 988
BspCNI CTCAG 4 cut(s) 184, 239, 624, 859
BspFNI CGCG 2 cut(s) 399, 988
BspLI GGNNCC 1 cut(s) 96
BspOI GCTAGC 1 cut(s) 242
BspPI GGATC 2 cut(s) 252, 464
BspTNI GGTCTC 1 cut(s) 988
BsrI ACTGG 2 cut(s) 664, 741
BssECI CCNNGG 5 cut(s) 90, 702, 756, 793, 890
BssMI GATC 4 cut(s) 106, 244, 469, 972
BssSI CACGAG 1 cut(s) 671
BssT1I CCWWGG 3 cut(s) 702, 793, 890
Bst2BI CACGAG 1 cut(s) 671
Bst4CI ACNGT 2 cut(s) 94, 564
Bst6I CTCTTC 2 cut(s) 7, 986
BstC8I GCNNGC 3 cut(s) 240, 721, 917
BstDEI CTNAG 7 cut(s) 171, 226, 456, 537, 632, 846, 1017
BstDSI CCRYGG 2 cut(s) 90, 756
BstEII GGTNACC 1 cut(s) 332
BstF5I GGATG 3 cut(s) 289, 472, 867
BstFNI CGCG 2 cut(s) 399, 988
BstH2I RGCGCY 2 cut(s) 239, 609
BstHHI GCGC 3 cut(s) 238, 608, 988
BstKTI GATC 4 cut(s) 109, 247, 472, 975
BstMAI GTCTC 4 cut(s) 66, 516, 942, 988
BstMBI GATC 4 cut(s) 106, 244, 469, 972
BstMCI CGRYCG 1 cut(s) 397
BstMWI GCNNNNNNNGC 4 cut(s) 35, 821, 824, 851
BstPI GGTNACC 1 cut(s) 332
BstSCI CCNGG 1 cut(s) 336
BstUI CGCG 2 cut(s) 399, 988
BstV1I GCAGC 4 cut(s) 47, 802, 811, 824
BstV2I GAAGAC 1 cut(s) 444
Bsu36I CCTNAGG 1 cut(s) 226
BtgI CCRYGG 2 cut(s) 90, 756
BtsCI GGATG 3 cut(s) 289, 472, 867
BtsIMutI CAGTG 2 cut(s) 569, 657
Cac8I GCNNGC 3 cut(s) 240, 721, 917
CfoI GCGC 3 cut(s) 238, 608, 988
Cfr13I GGNCC 1 cut(s) 662
CviAII CATG 4 cut(s) 213, 361, 781, 872
DdeI CTNAG 7 cut(s) 171, 226, 456, 537, 632, 846, 1017
DpnI GATC 4 cut(s) 108, 246, 471, 974
DpnII GATC 4 cut(s) 106, 244, 469, 972
Eam1104I CTCTTC 2 cut(s) 7, 986
EarI CTCTTC 2 cut(s) 7, 986
Eco130I CCWWGG 3 cut(s) 702, 793, 890
Eco31I GGTCTC 1 cut(s) 988
Eco47I GGWCC 1 cut(s) 662
Eco57I CTGAAG 1 cut(s) 693
Eco81I CCTNAGG 1 cut(s) 226
Eco91I GGTNACC 1 cut(s) 332
EcoO65I GGTNACC 1 cut(s) 332
EcoT14I CCWWGG 3 cut(s) 702, 793, 890
EcoT22I ATGCAT 1 cut(s) 214
ErhI CCWWGG 3 cut(s) 702, 793, 890
FaeI CATG 4 cut(s) 216, 364, 784, 875
FaqI GGGAC 1 cut(s) 265
FatI CATG 4 cut(s) 212, 360, 780, 871
FauI CCCGC 1 cut(s) 210
Fnu4HI GCNGC 5 cut(s) 36, 76, 813, 816, 825
FokI GGATG 3 cut(s) 296, 479, 854
Fsp4HI GCNGC 5 cut(s) 36, 76, 813, 816, 825
FspBI CTAG 3 cut(s) 126, 239, 804
GlaI GCGC 3 cut(s) 237, 607, 987
GluI GCNGC 5 cut(s) 36, 76, 813, 816, 825
GsaI CCCAGC 1 cut(s) 596
GsuI CTGGAG 1 cut(s) 532
HaeII RGCGCY 2 cut(s) 239, 609
HapII CCGG 1 cut(s) 338
HhaI GCGC 3 cut(s) 238, 608, 988
Hin1II CATG 4 cut(s) 216, 364, 784, 875
Hin6I GCGC 3 cut(s) 236, 606, 986
HinP1I GCGC 3 cut(s) 236, 606, 986
HincII GTYRAC 1 cut(s) 202
HindII GTYRAC 1 cut(s) 202
HindIII AAGCTT 1 cut(s) 917
HinfI GANTC 2 cut(s) 18, 401
HpaII CCGG 1 cut(s) 338
HphI GGTGA 4 cut(s) 344, 608, 730, 979
Hpy166II GTNNAC 5 cut(s) 202, 580, 694, 730, 738
Hpy188I TCNGA 5 cut(s) 160, 178, 283, 642, 849
Hpy188III TCNNGA 2 cut(s) 326, 549
Hpy8I GTNNAC 5 cut(s) 202, 580, 694, 730, 738
HpyAV CCTTC 5 cut(s) 457, 484, 502, 769, 958
HpyCH4III ACNGT 2 cut(s) 94, 564
HpyCH4V TGCA 4 cut(s) 212, 257, 723, 812
HpyF10VI GCNNNNNNNGC 4 cut(s) 35, 821, 824, 851
HpyF3I CTNAG 7 cut(s) 171, 226, 456, 537, 632, 846, 1017
Hsp92II CATG 4 cut(s) 216, 364, 784, 875
HspAI GCGC 3 cut(s) 236, 606, 986
Kzo9I GATC 4 cut(s) 106, 244, 469, 972
Lsp1109I GCAGC 4 cut(s) 47, 802, 811, 824
LweI GCATC 1 cut(s) 199
MaeI CTAG 3 cut(s) 126, 239, 804
MaeIII GTNAC 1 cut(s) 332
MalI GATC 4 cut(s) 108, 246, 471, 974
MboI GATC 4 cut(s) 106, 244, 469, 972
MboII GAAGA 7 cut(s) 24, 444, 472, 493, 637, 982, 1003
MluCI AATT 4 cut(s) 23, 531, 924, 942
MmeI TCCRAC 3 cut(s) 156, 665, 888
Mph1103I ATGCAT 1 cut(s) 214
MseI TTAA 1 cut(s) 957
MslI CAYNNNNRTG 1 cut(s) 959
MspA1I CMGCKG 1 cut(s) 815
MspI CCGG 1 cut(s) 338
MspR9I CCNGG 1 cut(s) 338
Mva1269I GAATGC 1 cut(s) 814
MvnI CGCG 2 cut(s) 399, 988
MwoI GCNNNNNNNGC 4 cut(s) 35, 821, 824, 851
NciI CCSGG 1 cut(s) 338
NdeII GATC 4 cut(s) 106, 244, 469, 972
NheI GCTAGC 1 cut(s) 238
NlaIII CATG 4 cut(s) 216, 364, 784, 875
NlaIV GGNNCC 1 cut(s) 96
NmeAIII GCCGAG 1 cut(s) 568
NmuCI GTSAC 1 cut(s) 332
NsiI ATGCAT 1 cut(s) 214
PctI GAATGC 1 cut(s) 814
PfeI GAWTC 2 cut(s) 18, 401
PkrI GCNGC 5 cut(s) 37, 77, 814, 817, 826
PshBI ATTAAT 1 cut(s) 957
PsiI TTATAA 1 cut(s) 648
PspEI GGTNACC 1 cut(s) 332
PspFI CCCAGC 1 cut(s) 592
PspN4I GGNNCC 1 cut(s) 96
PspPI GGNCC 1 cut(s) 662
PvuII CAGCTG 1 cut(s) 815
RseI CAYNNNNRTG 1 cut(s) 959
SaqAI TTAA 1 cut(s) 957
SatI GCNGC 5 cut(s) 36, 76, 813, 816, 825
Sau3AI GATC 4 cut(s) 106, 244, 469, 972
Sau96I GGNCC 1 cut(s) 662
ScrFI CCNGG 1 cut(s) 338
SfaNI GCATC 1 cut(s) 199
SinI GGWCC 1 cut(s) 662
SmiMI CAYNNNNRTG 1 cut(s) 959
SmlI CTYRAG 1 cut(s) 326
SmoI CTYRAG 1 cut(s) 326
Sse9I AATT 4 cut(s) 23, 531, 924, 942
SsiI CCGC 6 cut(s) 76, 217, 242, 290, 397, 988
SspMI CTAG 3 cut(s) 126, 239, 804
StyD4I CCNGG 1 cut(s) 336
StyI CCWWGG 3 cut(s) 702, 793, 890
TaaI ACNGT 2 cut(s) 94, 564
TaqI TCGA 5 cut(s) 105, 345, 393, 429, 773
TasI AATT 4 cut(s) 23, 531, 924, 942
TauI GCSGC 1 cut(s) 78
TfiI GAWTC 2 cut(s) 18, 401
Tru1I TTAA 1 cut(s) 957
Tru9I TTAA 1 cut(s) 957
TscAI CASTG 2 cut(s) 569, 664
TseFI GTSAC 1 cut(s) 332
TseI GCWGC 4 cut(s) 35, 812, 815, 824
Tsp45I GTSAC 1 cut(s) 332
TspDTI ATGAA 3 cut(s) 300, 312, 797
TspRI CASTG 2 cut(s) 569, 664
VpaK11BI GGWCC 1 cut(s) 662
VspI ATTAAT 1 cut(s) 957
XapI RAATTY 1 cut(s) 23
XspI CTAG 3 cut(s) 126, 239, 804
Zsp2I ATGCAT 1 cut(s) 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.