Rh4CG214100

Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0013033
Physical Location & Seq
Forward (+)
44396800 .. 44398805
2006 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG214100.1

Sequence Viewer

Length: 1023 bp
ATGTTGTTGAGGAGAGGAATCAAATTCGCTTCAGCAGCATTTCCACATTTCATTTCCAAGGCTCCTGATTTTCGCTGTAAAGCCACCACCACGGTTCCCATTTTCGATCATTCGGCATACTACTCTAGTGGCTTTCGCTTCTCTCCTTTGTTCCCCTCCGAACCCAAACCTCAGTCGGATAGTTATGATATTGAGCTTGTTGACGATGATGCATGGCGGGTTTCCTCAGGTTTGGCGCTAGCGGATCAGGGGACTGCATTGGATGAAGCGGTTGATGAACCTGTTGATAGCTGCTCTCTACCTCTTGAGGGTGACCCGGATTTCGATGACATTGACAACATGAGAGTTCGGGGTAAACTGTTCTATAAAATCGACCGCGATTCCAAAGAGTTTGAAGAGTATAGTTTCGACTTCCATCGTAGGAACAAGTCTTCTAAGAAGAAGGATGATCCAAAGGAGAGTCAAAAGAAGAAGGATGATCCGAAGGAGAAGAAACAGAAGGTTAGTAGTTTGAAGGAAAGCAAAAGAGACAACCCAATTCCTAAGTTTTCCTCGAGAAGTGAGAAACAGTGTAGAGTTGTGGACAAATCTCGGCTTGGTGAAATGGGCGCTACTTGTGTTGAGAAGAAGAAGCTGAGAACTCCGACTTATAATCAGCTCACTGGTCCTTTCCACGAGCCGTTTTGCCTTGATGTTTACATCTCCAAGGCTTCAGTTCGTGCCTGCATTGTTCACAGGTTCACCAGTAAGGTTGTTGCCGTGGCACATTCCATATCGAAGGACATGAAGTTTGACCTTGGTTCAACTAGGAATGCAGCTGCTTGTGCTGCTGTTGGGGAAGTTCTGGCTCAGAGGGCATTGGGAGATGACATCCATGATGTGATTTACACACCAAGGAAAGGGGAAAGATTGGAGGGCAAGCTTCAAATTGTAGTTCAGTCTCTAATTGATAATGGCGTTAATGTGAAGGTGAAGATCAAACAAAGGGCGCGGAAGAAACCAACTTCCTTTTCTGCAGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L18p

Protein Analysis

340

Amino Acids

38.24

Weight (kDa)

9.16

Isoelectric Point (pI)

37.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L18p PF00861 229 - 321 3e-08 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013033)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22450 AT3G22450
fragaria_vesca FvH4_4g15620
malus_domestica MD13G1193200.v1.1 MD16G1194100.v1.1
prunus_persica Prupe.1G013800_v2.0.a1
pyrus_communis pycom13g16550 pycom16g16390
rosa_chinensis RchiOBHm_Chr4g0416191
rosa_laevigata RLG00000008007
rosa_multiflora Rmu_sc0001145.1_g000002
rosa_roxburghii Rroxscaffold_5G00360050
rosa_rugosa Rorug04G0139800
rosa_samantha Rh4AG201800 Rh4BG199200 Rh4CG214100 Rh4DG199000
rosa_wichuraiana Rw4G017060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 651
AccII CGCG 2 cut(s) 378, 991
AciI CCGC 5 cut(s) 217, 242, 269, 376, 991
AclWI GGATC 3 cut(s) 252, 443, 473
AcsI RAATTY 1 cut(s) 23
AcuI CTGAAG 2 cut(s) 15, 696
AfiI CCNNNNNNNGG 2 cut(s) 308, 899
AgsI TTSAA 4 cut(s) 395, 514, 804, 926
AjuI GAANNNNNNNTTGG 1 cut(s) 994
AluBI AGCT 6 cut(s) 196, 291, 634, 658, 818, 922
AluI AGCT 6 cut(s) 196, 291, 634, 658, 818, 922
Alw26I GTCTC 2 cut(s) 522, 945
AlwI GGATC 3 cut(s) 252, 443, 473
Ama87I CYCGRG 1 cut(s) 553
ApeKI GCWGC 6 cut(s) 35, 291, 815, 818, 827, 1016
ApoI RAATTY 1 cut(s) 23
ArsI GACNNNNNNTTYG 4 cut(s) 305, 337, 773, 805
AspLEI GCGC 3 cut(s) 238, 611, 991
AspS9I GGNCC 1 cut(s) 665
AsuC2I CCSGG 1 cut(s) 317
AsuHPI GGTGA 4 cut(s) 323, 611, 733, 982
AsuNHI GCTAGC 1 cut(s) 238
AvaI CYCGRG 1 cut(s) 553
AvaII GGWCC 1 cut(s) 665
AxyI CCTNAGG 1 cut(s) 226
BauI CACGAG 1 cut(s) 674
BbsI GAAGAC 1 cut(s) 423
BbvI GCAGC 5 cut(s) 47, 278, 805, 814, 827
BccI CCATC 1 cut(s) 423
BceAI ACGGC 2 cut(s) 664, 743
BcnI CCSGG 1 cut(s) 317
BcoDI GTCTC 2 cut(s) 522, 945
BfaI CTAG 4 cut(s) 126, 239, 807, 1021
BfmI CTRYAG 1 cut(s) 1014
BfoI RGCGCY 2 cut(s) 239, 612
BisI GCNGC 6 cut(s) 36, 292, 816, 819, 828, 1017
BlsI GCNGC 6 cut(s) 37, 293, 817, 820, 829, 1018
Bme1390I CCNGG 1 cut(s) 317
Bme18I GGWCC 1 cut(s) 665
BmeT110I CYCGRG 1 cut(s) 553
BmgT120I GGNCC 1 cut(s) 665
BmiI GGNNCC 2 cut(s) 63, 96
BmrFI CCNGG 1 cut(s) 317
BmsI GCATC 1 cut(s) 199
BmtI GCTAGC 1 cut(s) 242
BpiI GAAGAC 1 cut(s) 423
BpuEI CTTGAG 1 cut(s) 326
BpuMI CCSGG 1 cut(s) 317
BsaJI CCNNGG 6 cut(s) 57, 90, 705, 759, 796, 893
Bsc4I CCNNNNNNNGG 2 cut(s) 308, 899
Bse1I ACTGG 2 cut(s) 667, 744
Bse21I CCTNAGG 1 cut(s) 226
BseDI CCNNGG 6 cut(s) 57, 90, 705, 759, 796, 893
BseGI GGATG 4 cut(s) 268, 451, 481, 870
BseLI CCNNNNNNNGG 2 cut(s) 308, 899
BseMII CTCAG 4 cut(s) 185, 240, 626, 863
BseNI ACTGG 2 cut(s) 667, 744
BseRI GAGGAG 1 cut(s) 25
BseXI GCAGC 5 cut(s) 47, 278, 805, 814, 827
Bsh1236I CGCG 2 cut(s) 378, 991
Bsh1285I CGRYCG 1 cut(s) 376
BsiEI CGRYCG 1 cut(s) 376
BsiHKCI CYCGRG 1 cut(s) 553
BsiSI CCGG 1 cut(s) 317
BslFI GGGAC 1 cut(s) 265
BslI CCNNNNNNNGG 2 cut(s) 308, 899
BsmAI GTCTC 2 cut(s) 522, 945
BsmFI GGGAC 1 cut(s) 265
BsmI GAATGC 1 cut(s) 817
BsoBI CYCGRG 1 cut(s) 553
Bsp143I GATC 5 cut(s) 106, 244, 448, 478, 975
BspACI CCGC 5 cut(s) 217, 242, 269, 376, 991
BspCNI CTCAG 4 cut(s) 184, 239, 627, 862
BspFNI CGCG 2 cut(s) 378, 991
BspLI GGNNCC 2 cut(s) 63, 96
BspMAI CTGCAG 1 cut(s) 1018
BspOI GCTAGC 1 cut(s) 242
BspPI GGATC 3 cut(s) 252, 443, 473
BsrI ACTGG 2 cut(s) 667, 744
BssECI CCNNGG 6 cut(s) 57, 90, 705, 759, 796, 893
BssMI GATC 5 cut(s) 106, 244, 448, 478, 975
BssSI CACGAG 1 cut(s) 674
BssT1I CCWWGG 4 cut(s) 57, 705, 796, 893
Bst2BI CACGAG 1 cut(s) 674
Bst4CI ACNGT 3 cut(s) 94, 360, 570
Bst6I CTCTTC 1 cut(s) 390
BstC8I GCNNGC 3 cut(s) 240, 724, 920
BstDEI CTNAG 6 cut(s) 171, 226, 435, 543, 635, 849
BstDSI CCRYGG 2 cut(s) 90, 759
BstEII GGTNACC 1 cut(s) 311
BstF5I GGATG 4 cut(s) 268, 451, 481, 870
BstFNI CGCG 2 cut(s) 378, 991
BstH2I RGCGCY 2 cut(s) 239, 612
BstHHI GCGC 3 cut(s) 238, 611, 991
BstKTI GATC 5 cut(s) 109, 247, 451, 481, 978
BstMAI GTCTC 2 cut(s) 522, 945
BstMBI GATC 5 cut(s) 106, 244, 448, 478, 975
BstMCI CGRYCG 1 cut(s) 376
BstMWI GCNNNNNNNGC 4 cut(s) 35, 824, 827, 854
BstPI GGTNACC 1 cut(s) 311
BstSCI CCNGG 1 cut(s) 315
BstSFI CTRYAG 1 cut(s) 1014
BstUI CGCG 2 cut(s) 378, 991
BstV1I GCAGC 5 cut(s) 47, 278, 805, 814, 827
BstV2I GAAGAC 1 cut(s) 423
Bsu36I CCTNAGG 1 cut(s) 226
BtgI CCRYGG 2 cut(s) 90, 759
BtsCI GGATG 4 cut(s) 268, 451, 481, 870
BtsIMutI CAGTG 2 cut(s) 575, 660
Cac8I GCNNGC 3 cut(s) 240, 724, 920
CfoI GCGC 3 cut(s) 238, 611, 991
Cfr13I GGNCC 1 cut(s) 665
CviAII CATG 4 cut(s) 213, 340, 784, 875
DdeI CTNAG 6 cut(s) 171, 226, 435, 543, 635, 849
DpnI GATC 5 cut(s) 108, 246, 450, 480, 977
DpnII GATC 5 cut(s) 106, 244, 448, 478, 975
Eam1104I CTCTTC 1 cut(s) 390
EarI CTCTTC 1 cut(s) 390
Eco130I CCWWGG 4 cut(s) 57, 705, 796, 893
Eco47I GGWCC 1 cut(s) 665
Eco57I CTGAAG 2 cut(s) 15, 696
Eco81I CCTNAGG 1 cut(s) 226
Eco88I CYCGRG 1 cut(s) 553
Eco91I GGTNACC 1 cut(s) 311
EcoO65I GGTNACC 1 cut(s) 311
EcoT14I CCWWGG 4 cut(s) 57, 705, 796, 893
EcoT22I ATGCAT 1 cut(s) 214
ErhI CCWWGG 4 cut(s) 57, 705, 796, 893
FaeI CATG 4 cut(s) 216, 343, 787, 878
FaqI GGGAC 1 cut(s) 265
FatI CATG 4 cut(s) 212, 339, 783, 874
FauI CCCGC 1 cut(s) 210
Fnu4HI GCNGC 6 cut(s) 36, 292, 816, 819, 828, 1017
FokI GGATG 4 cut(s) 275, 458, 488, 857
Fsp4HI GCNGC 6 cut(s) 36, 292, 816, 819, 828, 1017
FspBI CTAG 4 cut(s) 126, 239, 807, 1021
GlaI GCGC 3 cut(s) 237, 610, 990
GluI GCNGC 6 cut(s) 36, 292, 816, 819, 828, 1017
HaeII RGCGCY 2 cut(s) 239, 612
HapII CCGG 1 cut(s) 317
HhaI GCGC 3 cut(s) 238, 611, 991
Hin1II CATG 4 cut(s) 216, 343, 787, 878
Hin6I GCGC 3 cut(s) 236, 609, 989
HinP1I GCGC 3 cut(s) 236, 609, 989
HincII GTYRAC 1 cut(s) 202
HindII GTYRAC 1 cut(s) 202
HindIII AAGCTT 1 cut(s) 920
HinfI GANTC 3 cut(s) 18, 380, 460
HpaII CCGG 1 cut(s) 317
HphI GGTGA 4 cut(s) 323, 611, 733, 982
Hpy166II GTNNAC 6 cut(s) 202, 356, 583, 697, 733, 741
Hpy188I TCNGA 5 cut(s) 160, 178, 483, 645, 852
Hpy188III TCNNGA 3 cut(s) 65, 305, 555
Hpy8I GTNNAC 6 cut(s) 202, 356, 583, 697, 733, 741
HpyAV CCTTC 7 cut(s) 436, 466, 478, 493, 508, 772, 961
HpyCH4III ACNGT 3 cut(s) 94, 360, 570
HpyCH4V TGCA 5 cut(s) 212, 257, 726, 815, 1016
HpyF10VI GCNNNNNNNGC 4 cut(s) 35, 824, 827, 854
HpyF3I CTNAG 6 cut(s) 171, 226, 435, 543, 635, 849
Hsp92II CATG 4 cut(s) 216, 343, 787, 878
HspAI GCGC 3 cut(s) 236, 609, 989
Kzo9I GATC 5 cut(s) 106, 244, 448, 478, 975
LmnI GCTCC 1 cut(s) 67
Lsp1109I GCAGC 5 cut(s) 47, 278, 805, 814, 827
LweI GCATC 1 cut(s) 199
MaeI CTAG 4 cut(s) 126, 239, 807, 1021
MaeIII GTNAC 1 cut(s) 311
MalI GATC 5 cut(s) 108, 246, 450, 480, 977
MboI GATC 5 cut(s) 106, 244, 448, 478, 975
MboII GAAGA 9 cut(s) 407, 423, 451, 481, 502, 637, 640, 985, 1006
MluCI AATT 4 cut(s) 23, 537, 927, 945
MlyI GAGTC 1 cut(s) 469
MmeI TCCRAC 2 cut(s) 156, 668
Mph1103I ATGCAT 1 cut(s) 214
MseI TTAA 1 cut(s) 960
MspA1I CMGCKG 1 cut(s) 818
MspI CCGG 1 cut(s) 317
MspR9I CCNGG 1 cut(s) 317
Mva1269I GAATGC 1 cut(s) 817
MvnI CGCG 2 cut(s) 378, 991
MwoI GCNNNNNNNGC 4 cut(s) 35, 824, 827, 854
NciI CCSGG 1 cut(s) 317
NdeII GATC 5 cut(s) 106, 244, 448, 478, 975
NheI GCTAGC 1 cut(s) 238
NlaIII CATG 4 cut(s) 216, 343, 787, 878
NlaIV GGNNCC 2 cut(s) 63, 96
NmeAIII GCCGAG 1 cut(s) 571
NmuCI GTSAC 1 cut(s) 311
NsiI ATGCAT 1 cut(s) 214
PaeR7I CTCGAG 1 cut(s) 553
PctI GAATGC 1 cut(s) 817
PfeI GAWTC 2 cut(s) 18, 380
PkrI GCNGC 6 cut(s) 37, 293, 817, 820, 829, 1018
PleI GAGTC 1 cut(s) 468
PpsI GAGTC 1 cut(s) 468
PsiI TTATAA 1 cut(s) 651
PspEI GGTNACC 1 cut(s) 311
PspN4I GGNNCC 2 cut(s) 63, 96
PspPI GGNCC 1 cut(s) 665
PstI CTGCAG 1 cut(s) 1018
PvuII CAGCTG 1 cut(s) 818
SaqAI TTAA 1 cut(s) 960
SatI GCNGC 6 cut(s) 36, 292, 816, 819, 828, 1017
Sau3AI GATC 5 cut(s) 106, 244, 448, 478, 975
Sau96I GGNCC 1 cut(s) 665
SchI GAGTC 1 cut(s) 469
ScrFI CCNGG 1 cut(s) 317
SfaNI GCATC 1 cut(s) 199
SfcI CTRYAG 1 cut(s) 1014
Sfr274I CTCGAG 1 cut(s) 553
SinI GGWCC 1 cut(s) 665
SlaI CTCGAG 1 cut(s) 553
SmlI CTYRAG 2 cut(s) 305, 553
SmoI CTYRAG 2 cut(s) 305, 553
Sse9I AATT 4 cut(s) 23, 537, 927, 945
SsiI CCGC 5 cut(s) 217, 242, 269, 376, 991
SspMI CTAG 4 cut(s) 126, 239, 807, 1021
StyD4I CCNGG 1 cut(s) 315
StyI CCWWGG 4 cut(s) 57, 705, 796, 893
TaaI ACNGT 3 cut(s) 94, 360, 570
TaqI TCGA 6 cut(s) 105, 324, 372, 408, 554, 776
TasI AATT 4 cut(s) 23, 537, 927, 945
TfiI GAWTC 2 cut(s) 18, 380
Tru1I TTAA 1 cut(s) 960
Tru9I TTAA 1 cut(s) 960
TscAI CASTG 2 cut(s) 575, 667
TseFI GTSAC 1 cut(s) 311
TseI GCWGC 6 cut(s) 35, 291, 815, 818, 827, 1016
Tsp45I GTSAC 1 cut(s) 311
TspDTI ATGAA 4 cut(s) 40, 279, 291, 800
TspRI CASTG 2 cut(s) 575, 667
VpaK11BI GGWCC 1 cut(s) 665
XapI RAATTY 1 cut(s) 23
XhoI CTCGAG 1 cut(s) 553
XspI CTAG 4 cut(s) 126, 239, 807, 1021
Zsp2I ATGCAT 1 cut(s) 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.