RLG00000008007

Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0013033
Physical Location & Seq
Forward (+)
24205741 .. 24206808
1068 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008007

Sequence Viewer

Length: 1068 bp
ATGTTGTTGAGGAGAGGAATCAAATTCGCTTCAGCAGCATTTCCACATTTCATTTCCAAGGCTCCTAATTTTCGCTGTAAAGCCACCACCACGGTTCCCATTTTCTATCATTCGGCACGAGTTGCATACTACTCTAGTGGCTTTCGCCTCTCTCCTTTCTTCCCCTCCGAACCCAAACCTCAGTCGGATAGTTATGATATTGAGCTTGTTGACGATGATGCATGGCGGGTTTCCTCAGGTTTGGCGCTAGCGGATCAACCAATGCAGGGGACTGCTGCATTGGAGGAACAAAGTTTCTTATCGGATGAAGCGGTTGATGAACCTTTTGATGGTTGCTCTCTACCTCTTGAGGGTGACCCGGATTTCGATGACATTGACAACATGAGAGTTCGGGGCAGATTGTTCTATAAAATCGACCGCGATTCCAAAGAGTTTGAGGAGTATAGTTTCGACTTCCATCGTAGGAACAAGTCTTCTAAGAAGAAGGATGATCCAAGGGAGGGTAAAAAGAAGAAGGATGATCCGAAGGAGAAGAAACAGAAGGCTAGTGGTTTGAAGGAAAGCAAAAGAGACAACCCAATTCCTAAGTTTTCCTCAAGAAGTGAGAAACAATGTAGAGTTGTTGTGGACAACTCTCGGCTAGGTGAAATGAGCGCTACTTGTGTTGAGAAGAAGAAGCTGAGAACTCCGACTTATAATCAGCTCACTGGTCCTTTCCACGAGCCGTTTTGCCTTGATGTTTACATCTCCAAGGCTTCAGTTCGTGCCTGCATTGTTCACAGGTTCACCAGTAAGGTTGTTGCCGTGGCACATTCCATATCGAAGGACATGAAGTTTGACCTTGGTTCAACTAGGAATGCAGCTGCTTGTGCTGCTGTTGGGGAAGTTCTGGCTCAGAGGGCATTGGGAGATGACATCCATGATGTGATTTACACACCAAGGAAAGGGGAAAGACTGGAGGGCAAGCTTCAAATTGTAGTTCAGTCTCTAATTGATAATGGCGTTAATGTGAAGGTGAAGATCAAACAAAGGGCGCGGAAGAAACCAACTTCCTTTTCTGCAGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L18p

Protein Analysis

356

Amino Acids

39.96

Weight (kDa)

9.23

Isoelectric Point (pI)

40.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L18p PF00861 244 - 336 3.2e-08 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013033)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22450 AT3G22450
fragaria_vesca FvH4_4g15620
malus_domestica MD13G1193200.v1.1 MD16G1194100.v1.1
prunus_persica Prupe.1G013800_v2.0.a1
pyrus_communis pycom13g16550 pycom16g16390
rosa_chinensis RchiOBHm_Chr4g0416191
rosa_laevigata RLG00000008007
rosa_multiflora Rmu_sc0001145.1_g000002
rosa_roxburghii Rroxscaffold_5G00360050
rosa_rugosa Rorug04G0139800
rosa_samantha Rh4AG201800 Rh4BG199200 Rh4CG214100 Rh4DG199000
rosa_wichuraiana Rw4G017060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 696
AccII CGCG 2 cut(s) 420, 1036
AciI CCGC 5 cut(s) 226, 251, 311, 418, 1036
AclWI GGATC 3 cut(s) 261, 485, 515
AcsI RAATTY 1 cut(s) 23
AcuI CTGAAG 2 cut(s) 15, 741
AfeI AGCGCT 1 cut(s) 655
AfiI CCNNNNNNNGG 5 cut(s) 266, 329, 350, 500, 944
AgsI TTSAA 3 cut(s) 556, 849, 971
AjuI GAANNNNNNNTTGG 1 cut(s) 1039
AluBI AGCT 5 cut(s) 205, 679, 703, 863, 967
AluI AGCT 5 cut(s) 205, 679, 703, 863, 967
Alw26I GTCTC 2 cut(s) 564, 990
AlwI GGATC 3 cut(s) 261, 485, 515
Aor51HI AGCGCT 1 cut(s) 655
ApeKI GCWGC 6 cut(s) 35, 275, 860, 863, 872, 1061
ApoI RAATTY 1 cut(s) 23
ArsI GACNNNNNNTTYG 4 cut(s) 347, 379, 818, 850
AspLEI GCGC 3 cut(s) 247, 656, 1036
AspS9I GGNCC 1 cut(s) 710
AsuC2I CCSGG 1 cut(s) 359
AsuHPI GGTGA 4 cut(s) 365, 656, 778, 1027
AsuNHI GCTAGC 1 cut(s) 247
AvaII GGWCC 1 cut(s) 710
AxyI CCTNAGG 1 cut(s) 235
BauI CACGAG 2 cut(s) 117, 719
BbsI GAAGAC 1 cut(s) 465
BbvI GCAGC 5 cut(s) 47, 262, 850, 859, 872
BccI CCATC 2 cut(s) 323, 465
BceAI ACGGC 2 cut(s) 709, 788
BcnI CCSGG 1 cut(s) 359
BcoDI GTCTC 2 cut(s) 564, 990
BfaI CTAG 6 cut(s) 135, 248, 546, 641, 852, 1066
BfmI CTRYAG 1 cut(s) 1059
BfoI RGCGCY 2 cut(s) 248, 657
BisI GCNGC 6 cut(s) 36, 276, 861, 864, 873, 1062
BlsI GCNGC 6 cut(s) 37, 277, 862, 865, 874, 1063
Bme1390I CCNGG 1 cut(s) 359
Bme18I GGWCC 1 cut(s) 710
BmgT120I GGNCC 1 cut(s) 710
BmiI GGNNCC 2 cut(s) 63, 96
BmrFI CCNGG 1 cut(s) 359
BmsI GCATC 1 cut(s) 208
BmtI GCTAGC 1 cut(s) 251
BpiI GAAGAC 1 cut(s) 465
BpmI CTGGAG 1 cut(s) 977
BpuEI CTTGAG 2 cut(s) 368, 580
BpuMI CCSGG 1 cut(s) 359
BsaJI CCNNGG 7 cut(s) 57, 90, 494, 750, 804, 841, 938
Bsc4I CCNNNNNNNGG 5 cut(s) 266, 329, 350, 500, 944
Bse1I ACTGG 3 cut(s) 712, 789, 960
Bse21I CCTNAGG 1 cut(s) 235
BseDI CCNNGG 7 cut(s) 57, 90, 494, 750, 804, 841, 938
BseGI GGATG 4 cut(s) 310, 493, 523, 915
BseLI CCNNNNNNNGG 5 cut(s) 266, 329, 350, 500, 944
BseMII CTCAG 4 cut(s) 194, 249, 671, 908
BseNI ACTGG 3 cut(s) 712, 789, 960
BseRI GAGGAG 2 cut(s) 25, 452
BseXI GCAGC 5 cut(s) 47, 262, 850, 859, 872
Bsh1236I CGCG 2 cut(s) 420, 1036
Bsh1285I CGRYCG 1 cut(s) 418
BsiEI CGRYCG 1 cut(s) 418
BsiSI CCGG 1 cut(s) 359
BslFI GGGAC 1 cut(s) 283
BslI CCNNNNNNNGG 5 cut(s) 266, 329, 350, 500, 944
BsmAI GTCTC 2 cut(s) 564, 990
BsmFI GGGAC 1 cut(s) 283
BsmI GAATGC 1 cut(s) 862
Bsp143I GATC 4 cut(s) 253, 490, 520, 1020
BspACI CCGC 5 cut(s) 226, 251, 311, 418, 1036
BspCNI CTCAG 4 cut(s) 193, 248, 672, 907
BspFNI CGCG 2 cut(s) 420, 1036
BspLI GGNNCC 2 cut(s) 63, 96
BspMAI CTGCAG 1 cut(s) 1063
BspOI GCTAGC 1 cut(s) 251
BspPI GGATC 3 cut(s) 261, 485, 515
BsrI ACTGG 3 cut(s) 712, 789, 960
BssECI CCNNGG 7 cut(s) 57, 90, 494, 750, 804, 841, 938
BssMI GATC 4 cut(s) 253, 490, 520, 1020
BssSI CACGAG 2 cut(s) 117, 719
BssT1I CCWWGG 5 cut(s) 57, 494, 750, 841, 938
Bst2BI CACGAG 2 cut(s) 117, 719
Bst4CI ACNGT 1 cut(s) 94
BstAPI GCANNNNNTGC 1 cut(s) 122
BstC8I GCNNGC 3 cut(s) 249, 769, 965
BstDEI CTNAG 6 cut(s) 180, 235, 477, 585, 680, 894
BstDSI CCRYGG 2 cut(s) 90, 804
BstEII GGTNACC 1 cut(s) 353
BstF5I GGATG 4 cut(s) 310, 493, 523, 915
BstFNI CGCG 2 cut(s) 420, 1036
BstH2I RGCGCY 2 cut(s) 248, 657
BstHHI GCGC 3 cut(s) 247, 656, 1036
BstKTI GATC 4 cut(s) 256, 493, 523, 1023
BstMAI GTCTC 2 cut(s) 564, 990
BstMBI GATC 4 cut(s) 253, 490, 520, 1020
BstMCI CGRYCG 1 cut(s) 418
BstMWI GCNNNNNNNGC 5 cut(s) 35, 122, 869, 872, 899
BstPI GGTNACC 1 cut(s) 353
BstSCI CCNGG 1 cut(s) 357
BstSFI CTRYAG 1 cut(s) 1059
BstUI CGCG 2 cut(s) 420, 1036
BstV1I GCAGC 5 cut(s) 47, 262, 850, 859, 872
BstV2I GAAGAC 1 cut(s) 465
Bsu36I CCTNAGG 1 cut(s) 235
BtgI CCRYGG 2 cut(s) 90, 804
BtsCI GGATG 4 cut(s) 310, 493, 523, 915
BtsIMutI CAGTG 1 cut(s) 705
Cac8I GCNNGC 3 cut(s) 249, 769, 965
CfoI GCGC 3 cut(s) 247, 656, 1036
Cfr13I GGNCC 1 cut(s) 710
CviAII CATG 4 cut(s) 222, 382, 829, 920
DdeI CTNAG 6 cut(s) 180, 235, 477, 585, 680, 894
DpnI GATC 4 cut(s) 255, 492, 522, 1022
DpnII GATC 4 cut(s) 253, 490, 520, 1020
Eco130I CCWWGG 5 cut(s) 57, 494, 750, 841, 938
Eco47I GGWCC 1 cut(s) 710
Eco47III AGCGCT 1 cut(s) 655
Eco57I CTGAAG 2 cut(s) 15, 741
Eco81I CCTNAGG 1 cut(s) 235
Eco91I GGTNACC 1 cut(s) 353
EcoO65I GGTNACC 1 cut(s) 353
EcoT14I CCWWGG 5 cut(s) 57, 494, 750, 841, 938
EcoT22I ATGCAT 1 cut(s) 223
ErhI CCWWGG 5 cut(s) 57, 494, 750, 841, 938
FaeI CATG 4 cut(s) 225, 385, 832, 923
FaqI GGGAC 1 cut(s) 283
FatI CATG 4 cut(s) 221, 381, 828, 919
FauI CCCGC 1 cut(s) 219
Fnu4HI GCNGC 6 cut(s) 36, 276, 861, 864, 873, 1062
FokI GGATG 4 cut(s) 317, 500, 530, 902
Fsp4HI GCNGC 6 cut(s) 36, 276, 861, 864, 873, 1062
FspBI CTAG 6 cut(s) 135, 248, 546, 641, 852, 1066
GlaI GCGC 3 cut(s) 246, 655, 1035
GluI GCNGC 6 cut(s) 36, 276, 861, 864, 873, 1062
GsuI CTGGAG 1 cut(s) 977
HaeII RGCGCY 2 cut(s) 248, 657
HapII CCGG 1 cut(s) 359
HhaI GCGC 3 cut(s) 247, 656, 1036
Hin1II CATG 4 cut(s) 225, 385, 832, 923
Hin6I GCGC 3 cut(s) 245, 654, 1034
HinP1I GCGC 3 cut(s) 245, 654, 1034
HincII GTYRAC 1 cut(s) 211
HindII GTYRAC 1 cut(s) 211
HindIII AAGCTT 1 cut(s) 965
HinfI GANTC 2 cut(s) 18, 422
HpaII CCGG 1 cut(s) 359
HphI GGTGA 4 cut(s) 365, 656, 778, 1027
Hpy166II GTNNAC 5 cut(s) 211, 628, 742, 778, 786
Hpy188I TCNGA 6 cut(s) 169, 187, 304, 525, 690, 897
Hpy188III TCNNGA 2 cut(s) 347, 597
Hpy8I GTNNAC 5 cut(s) 211, 628, 742, 778, 786
HpyAV CCTTC 7 cut(s) 478, 508, 520, 535, 550, 817, 1006
HpyCH4III ACNGT 1 cut(s) 94
HpyCH4V TGCA 7 cut(s) 125, 221, 265, 278, 771, 860, 1061
HpyF10VI GCNNNNNNNGC 5 cut(s) 35, 122, 869, 872, 899
HpyF3I CTNAG 6 cut(s) 180, 235, 477, 585, 680, 894
Hsp92II CATG 4 cut(s) 225, 385, 832, 923
HspAI GCGC 3 cut(s) 245, 654, 1034
Kzo9I GATC 4 cut(s) 253, 490, 520, 1020
LmnI GCTCC 1 cut(s) 67
LpnPI CCDG 9 cut(s) 222, 251, 372, 693, 766, 781, 802, 875, 941
Lsp1109I GCAGC 5 cut(s) 47, 262, 850, 859, 872
LweI GCATC 1 cut(s) 208
MaeI CTAG 6 cut(s) 135, 248, 546, 641, 852, 1066
MaeIII GTNAC 1 cut(s) 353
MalI GATC 4 cut(s) 255, 492, 522, 1022
MboI GATC 4 cut(s) 253, 490, 520, 1020
MboII GAAGA 9 cut(s) 151, 465, 493, 523, 544, 682, 685, 1030, 1051
MluCI AATT 5 cut(s) 23, 67, 579, 972, 990
MmeI TCCRAC 2 cut(s) 165, 713
Mph1103I ATGCAT 1 cut(s) 223
MseI TTAA 1 cut(s) 1005
MspA1I CMGCKG 1 cut(s) 863
MspI CCGG 1 cut(s) 359
MspR9I CCNGG 1 cut(s) 359
Mva1269I GAATGC 1 cut(s) 862
MvnI CGCG 2 cut(s) 420, 1036
MwoI GCNNNNNNNGC 5 cut(s) 35, 122, 869, 872, 899
NciI CCSGG 1 cut(s) 359
NdeII GATC 4 cut(s) 253, 490, 520, 1020
NheI GCTAGC 1 cut(s) 247
NlaIII CATG 4 cut(s) 225, 385, 832, 923
NlaIV GGNNCC 2 cut(s) 63, 96
NmeAIII GCCGAG 1 cut(s) 616
NmuCI GTSAC 1 cut(s) 353
NsiI ATGCAT 1 cut(s) 223
PctI GAATGC 1 cut(s) 862
PfeI GAWTC 2 cut(s) 18, 422
PkrI GCNGC 6 cut(s) 37, 277, 862, 865, 874, 1063
PsiI TTATAA 1 cut(s) 696
PspEI GGTNACC 1 cut(s) 353
PspN4I GGNNCC 2 cut(s) 63, 96
PspPI GGNCC 1 cut(s) 710
PstI CTGCAG 1 cut(s) 1063
PvuII CAGCTG 1 cut(s) 863
SaqAI TTAA 1 cut(s) 1005
SatI GCNGC 6 cut(s) 36, 276, 861, 864, 873, 1062
Sau3AI GATC 4 cut(s) 253, 490, 520, 1020
Sau96I GGNCC 1 cut(s) 710
ScrFI CCNGG 1 cut(s) 359
SfaNI GCATC 1 cut(s) 208
SfcI CTRYAG 1 cut(s) 1059
SinI GGWCC 1 cut(s) 710
SmlI CTYRAG 2 cut(s) 347, 595
SmoI CTYRAG 2 cut(s) 347, 595
Sse9I AATT 5 cut(s) 23, 67, 579, 972, 990
SsiI CCGC 5 cut(s) 226, 251, 311, 418, 1036
SspMI CTAG 6 cut(s) 135, 248, 546, 641, 852, 1066
StyD4I CCNGG 1 cut(s) 357
StyI CCWWGG 5 cut(s) 57, 494, 750, 841, 938
TaaI ACNGT 1 cut(s) 94
TaqI TCGA 4 cut(s) 366, 414, 450, 821
TasI AATT 5 cut(s) 23, 67, 579, 972, 990
TfiI GAWTC 2 cut(s) 18, 422
Tru1I TTAA 1 cut(s) 1005
Tru9I TTAA 1 cut(s) 1005
TscAI CASTG 1 cut(s) 712
TseFI GTSAC 1 cut(s) 353
TseI GCWGC 6 cut(s) 35, 275, 860, 863, 872, 1061
Tsp45I GTSAC 1 cut(s) 353
TspDTI ATGAA 4 cut(s) 40, 321, 333, 845
TspRI CASTG 1 cut(s) 712
VpaK11BI GGWCC 1 cut(s) 710
XapI RAATTY 1 cut(s) 23
XspI CTAG 6 cut(s) 135, 248, 546, 641, 852, 1066
Zsp2I ATGCAT 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.