Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0009903

Physical Location & Seq

Genomic Coordinates Reverse (-)

19984017 .. 19985456

Gene Structure 1440 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g16090.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGCGATTTCAGTGCCTTCTCCCCGTCTGGTACTTATGGCACTGGCAATGGCCGCTGTCTTGGTTATGCCAGTTGTTTACGGTCAAATTGGTACGCCTTGCACTGCTGCTACAATTGCGAGCTTCAGCCCTTGCATGAACTTTCTCACCAACAGCACCGCCAATGGTACTGCACCAACTGCAGACTGTTGCAATTCACTTAAGAATCTCACAAGTACCAGCAGGGACTGTATGTGCCTCATTGTAACTGGAAATGTTCCCTTCCAACTACCAATCAACCGTACTCTCGCCATCTCTCTTCCTCGTGCTTGCAACACCCCTGGCGTCCCACTCCAATGCAAAGCCACCGGTGCACCTCTTCCTGTTCCAGGTCCTAACTCTCAAGCACCAACTTCATCTCCTGGAGCTTCACCATCTGGCAGTCCCACAGCTTCTACTGTCCCTGAACCCAGCTCATCTGCTGAATCACCAGAATCAGACACAACACCATCATCAACAGGGGGCTCTGAAGCTCCAACATCTACTACTGGGAGCCGCCCAGTTCTGACTCCGACTCCATCAGCTTCCATACCATCTTACTCTCTATCGCCTTCTCTTCTGATATTGGCTTCAGCGGTTCTGGTGTTGAAGTTATACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

213

Amino Acids

21.23

Weight (kDa)

7.48

Isoelectric Point (pI)

60.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	16 - 113	1.5e-19	Probable lipid transfer
Tryp_alpha_amyl	PF00234	39 - 113	2.1e-08	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009903)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05450 AT3G22620
fragaria_vesca	FvH4_4g16090 FvH4_4g16090
malus_domestica	MD13G1196300.v1.1 MD16G1196800.v1.1
prunus_persica	Prupe.1G017000_v2.0.a1
pyrus_communis	pycom13g16840 pycom16g16560
rosa_chinensis	RchiOBHm_Chr4g0415631
rosa_laevigata	RLG00000008055
rosa_multiflora	Rmu_sc0001194.1_g000009 Rmu_sc0004599.1_g000011 Rmu_sc0038888.1_g000001
rosa_roxburghii	Rroxscaffold_5G00359450
rosa_rugosa	Rorug04G0136100
rosa_samantha	Rh4AG196600 Rh4BG195200 Rh4CG207400 Rh4DG194500
rosa_wichuraiana	Rw4G016720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	54, 159, 535, 614
AcoI	YGGCCR	1 cut(s)	51
AcuI	CTGAAG	3 cut(s)	109, 528, 594
AcyI	GRCGYC	1 cut(s)	324
AfaI	GTAC	5 cut(s)	33, 94, 169, 217, 283
AfiI	CCNNNNNNNGG	1 cut(s)	368
AflII	CTTAAG	1 cut(s)	200
AgeI	ACCGGT	1 cut(s)	347
AgsI	TTSAA	1 cut(s)	628
AjnI	CCWGG	3 cut(s)	319, 367, 400
AluBI	AGCT	6 cut(s)	123, 407, 431, 453, 512, 563
AluI	AGCT	6 cut(s)	123, 407, 431, 453, 512, 563
Alw21I	GWGCWC	1 cut(s)	355
Alw44I	GTGCAC	1 cut(s)	351
AlwNI	CAGNNNCTG	1 cut(s)	228
AoxI	GGCC	1 cut(s)	51
ApaLI	GTGCAC	1 cut(s)	351
ApeKI	GCWGC	1 cut(s)	107
AsiGI	ACCGGT	1 cut(s)	347
AspS9I	GGNCC	1 cut(s)	371
AsuHPI	GGTGA	3 cut(s)	139, 402, 459
AvaII	GGWCC	1 cut(s)	371
BaeGI	GKGCMC	1 cut(s)	355
BanII	GRGCYC	1 cut(s)	506
BauI	CACGAG	1 cut(s)	303
Bbv12I	GWGCWC	1 cut(s)	355
BbvI	GCAGC	1 cut(s)	94
BccI	CCATC	5 cut(s)	299, 421, 496, 565, 580
BcgI	CGANNNNNNTGC	1 cut(s)	29
BciT130I	CCWGG	3 cut(s)	321, 369, 402
BfaI	CTAG	1 cut(s)	637
BfmI	CTRYAG	1 cut(s)	180
BfrI	CTTAAG	1 cut(s)	200
BisI	GCNGC	3 cut(s)	54, 108, 535
BlsI	GCNGC	3 cut(s)	55, 109, 536
Bme1390I	CCNGG	3 cut(s)	321, 369, 402
Bme18I	GGWCC	1 cut(s)	371
BmgT120I	GGNCC	1 cut(s)	371
BmiI	GGNNCC	1 cut(s)	533
BmrFI	CCNGG	3 cut(s)	321, 369, 402
BmrI	ACTGGG	2 cut(s)	533, 537
BmuI	ACTGGG	2 cut(s)	533, 537
BpmI	CTGGAG	1 cut(s)	423
BpuEI	CTTGAG	1 cut(s)	366
BsaHI	GRCGYC	1 cut(s)	324
BsaJI	CCNNGG	1 cut(s)	319
BsaWI	WCCGGW	1 cut(s)	347
BsaXI	ACNNNNNCTCC	4 cut(s)	382, 412, 538, 568
Bsc4I	CCNNNNNNNGG	1 cut(s)	368
Bse118I	RCCGGY	1 cut(s)	347
Bse1I	ACTGG	5 cut(s)	48, 71, 253, 532, 539
Bse3DI	GCAATG	1 cut(s)	54
BseBI	CCWGG	3 cut(s)	321, 369, 402
BseDI	CCNNGG	1 cut(s)	319
BseLI	CCNNNNNNNGG	1 cut(s)	368
BseMI	GCAATG	1 cut(s)	54
BseNI	ACTGG	5 cut(s)	48, 71, 253, 532, 539
BseSI	GKGCMC	1 cut(s)	355
BseXI	GCAGC	1 cut(s)	94
BseYI	CCCAGC	1 cut(s)	449
BsgI	GTGCAG	1 cut(s)	156
BshFI	GGCC	1 cut(s)	53
BshTI	ACCGGT	1 cut(s)	347
BsiHKAI	GWGCWC	1 cut(s)	355
BsiSI	CCGG	1 cut(s)	348
BslFI	GGGAC	4 cut(s)	239, 311, 408, 425
BslI	CCNNNNNNNGG	1 cut(s)	368
BsmFI	GGGAC	4 cut(s)	239, 311, 408, 425
BsnI	GGCC	1 cut(s)	53
Bsp1286I	GDGCHC	2 cut(s)	355, 506
BspACI	CCGC	4 cut(s)	54, 159, 535, 614
BspANI	GGCC	1 cut(s)	53
BspLI	GGNNCC	1 cut(s)	533
BspMAI	CTGCAG	1 cut(s)	184
BspTI	CTTAAG	1 cut(s)	200
BsrDI	GCAATG	1 cut(s)	54
BsrFI	RCCGGY	1 cut(s)	347
BsrI	ACTGG	5 cut(s)	48, 71, 253, 532, 539
BssAI	RCCGGY	1 cut(s)	347
BssECI	CCNNGG	1 cut(s)	319
BssNI	GRCGYC	1 cut(s)	324
BssSI	CACGAG	1 cut(s)	303
Bst2BI	CACGAG	1 cut(s)	303
Bst2UI	CCWGG	3 cut(s)	321, 369, 402
Bst4CI	ACNGT	5 cut(s)	83, 188, 230, 281, 439
Bst6I	CTCTTC	3 cut(s)	303, 363, 600
BstACI	GRCGYC	1 cut(s)	324
BstAFI	CTTAAG	1 cut(s)	200
BstAPI	GCANNNNNTGC	1 cut(s)	179
BstC8I	GCNNGC	2 cut(s)	121, 310
BstENI	CCTNNNNNAGG	1 cut(s)	366
BstMWI	GCNNNNNNNGC	4 cut(s)	53, 116, 179, 350
BstNI	CCWGG	3 cut(s)	321, 369, 402
BstSCI	CCNGG	3 cut(s)	319, 367, 400
BstSFI	CTRYAG	1 cut(s)	180
BstSLI	GKGCMC	1 cut(s)	355
BstV1I	GCAGC	1 cut(s)	94
BsuRI	GGCC	1 cut(s)	53
BtsI	GCAGTG	1 cut(s)	102
BtsIMutI	CAGTG	3 cut(s)	18, 41, 102
Cac8I	GCNNGC	2 cut(s)	121, 310
CaiI	CAGNNNCTG	1 cut(s)	228
Cfr10I	RCCGGY	1 cut(s)	347
Cfr13I	GGNCC	1 cut(s)	371
CseI	GACGC	1 cut(s)	313
Csp6I	GTAC	5 cut(s)	32, 93, 168, 216, 282
CspAI	ACCGGT	1 cut(s)	347
CviAII	CATG	1 cut(s)	136
CviQI	GTAC	5 cut(s)	32, 93, 168, 216, 282
EaeI	YGGCCR	1 cut(s)	51
Eam1104I	CTCTTC	3 cut(s)	303, 363, 600
EarI	CTCTTC	3 cut(s)	303, 363, 600
Eco24I	GRGCYC	1 cut(s)	506
Eco47I	GGWCC	1 cut(s)	371
Eco57I	CTGAAG	3 cut(s)	109, 528, 594
EcoNI	CCTNNNNNAGG	1 cut(s)	366
EcoO109I	RGGNCCY	1 cut(s)	371
EcoRII	CCWGG	3 cut(s)	319, 367, 400
EcoT38I	GRGCYC	1 cut(s)	506
FaeI	CATG	1 cut(s)	139
FaiI	YATR	6 cut(s)	38, 68, 137, 233, 569, 634
FaqI	GGGAC	4 cut(s)	239, 311, 408, 425
FatI	CATG	1 cut(s)	135
Fnu4HI	GCNGC	3 cut(s)	54, 108, 535
FriOI	GRGCYC	1 cut(s)	506
Fsp4HI	GCNGC	3 cut(s)	54, 108, 535
FspBI	CTAG	1 cut(s)	637
GluI	GCNGC	3 cut(s)	54, 108, 535
GsaI	CCCAGC	1 cut(s)	453
GsuI	CTGGAG	1 cut(s)	423
HaeIII	GGCC	1 cut(s)	53
HapII	CCGG	1 cut(s)	348
HgaI	GACGC	1 cut(s)	313
Hin1I	GRCGYC	1 cut(s)	324
Hin1II	CATG	1 cut(s)	139
HinfI	GANTC	5 cut(s)	205, 464, 473, 547, 553
HpaII	CCGG	1 cut(s)	348
HphI	GGTGA	3 cut(s)	139, 402, 459
Hpy166II	GTNNAC	2 cut(s)	79, 353
Hpy188I	TCNGA	5 cut(s)	478, 508, 546, 552, 600
Hpy8I	GTNNAC	2 cut(s)	79, 353
HpyAV	CCTTC	3 cut(s)	27, 271, 600
HpyCH4III	ACNGT	5 cut(s)	83, 188, 230, 281, 439
HpyCH4V	TGCA	8 cut(s)	102, 135, 173, 182, 192, 312, 339, 353
HpyF10VI	GCNNNNNNNGC	4 cut(s)	53, 116, 179, 350
Hsp92I	GRCGYC	1 cut(s)	324
Hsp92II	CATG	1 cut(s)	139
LmnI	GCTCC	3 cut(s)	404, 517, 531
Lsp1109I	GCAGC	1 cut(s)	94
MaeI	CTAG	1 cut(s)	637
MaeIII	GTNAC	1 cut(s)	244
MboII	GAAGA	3 cut(s)	290, 350, 587
MfeI	CAATTG	1 cut(s)	114
MhlI	GDGCHC	2 cut(s)	355, 506
MluCI	AATT	3 cut(s)	87, 114, 193
MlyI	GAGTC	2 cut(s)	541, 547
MmeI	TCCRAC	3 cut(s)	289, 539, 575
MnlI	CCTC	3 cut(s)	248, 312, 366
MseI	TTAA	1 cut(s)	201
MslI	CAYNNNNRTG	1 cut(s)	334
MspA1I	CMGCKG	2 cut(s)	56, 614
MspCI	CTTAAG	1 cut(s)	200
MspI	CCGG	1 cut(s)	348
MspR9I	CCNGG	3 cut(s)	321, 369, 402
MunI	CAATTG	1 cut(s)	114
MvaI	CCWGG	3 cut(s)	321, 369, 402
MwoI	GCNNNNNNNGC	4 cut(s)	53, 116, 179, 350
NlaIII	CATG	1 cut(s)	139
NlaIV	GGNNCC	1 cut(s)	533
PfeI	GAWTC	3 cut(s)	205, 464, 473
PfoI	TCCNGGA	1 cut(s)	400
PinAI	ACCGGT	1 cut(s)	347
PkrI	GCNGC	3 cut(s)	55, 109, 536
PleI	GAGTC	2 cut(s)	541, 547
PpsI	GAGTC	2 cut(s)	541, 547
PpuMI	RGGWCCY	1 cut(s)	371
Psp5II	RGGWCCY	1 cut(s)	371
Psp6I	CCWGG	3 cut(s)	319, 367, 400
PspFI	CCCAGC	1 cut(s)	449
PspGI	CCWGG	3 cut(s)	319, 367, 400
PspN4I	GGNNCC	1 cut(s)	533
PspPI	GGNCC	1 cut(s)	371
PspPPI	RGGWCCY	1 cut(s)	371
PstI	CTGCAG	1 cut(s)	184
PstNI	CAGNNNCTG	1 cut(s)	228
RsaI	GTAC	5 cut(s)	33, 94, 169, 217, 283
RsaNI	GTAC	5 cut(s)	32, 93, 168, 216, 282
RseI	CAYNNNNRTG	1 cut(s)	334
SaqAI	TTAA	1 cut(s)	201
SatI	GCNGC	3 cut(s)	54, 108, 535
Sau96I	GGNCC	1 cut(s)	371
SchI	GAGTC	2 cut(s)	541, 547
ScrFI	CCNGG	3 cut(s)	321, 369, 402
SduI	GDGCHC	2 cut(s)	355, 506
SetI	ASST	8 cut(s)	125, 358, 373, 409, 433, 455, 514, 565
SfcI	CTRYAG	1 cut(s)	180
SgrAI	CRCCGGYG	1 cut(s)	347
SinI	GGWCC	1 cut(s)	371
SmiMI	CAYNNNNRTG	1 cut(s)	334
SmlI	CTYRAG	2 cut(s)	200, 381
SmoI	CTYRAG	2 cut(s)	200, 381
Sse9I	AATT	3 cut(s)	87, 114, 193
SsiI	CCGC	4 cut(s)	54, 159, 535, 614
SspMI	CTAG	1 cut(s)	637
StyD4I	CCNGG	3 cut(s)	319, 367, 400
TaaI	ACNGT	5 cut(s)	83, 188, 230, 281, 439
TasI	AATT	3 cut(s)	87, 114, 193
TauI	GCSGC	2 cut(s)	56, 537
TfiI	GAWTC	3 cut(s)	205, 464, 473
Tru1I	TTAA	1 cut(s)	201
Tru9I	TTAA	1 cut(s)	201
TscAI	CASTG	3 cut(s)	18, 48, 109
TseI	GCWGC	1 cut(s)	107
TspDTI	ATGAA	2 cut(s)	152, 384
TspRI	CASTG	3 cut(s)	18, 48, 109
Vha464I	CTTAAG	1 cut(s)	200
VneI	GTGCAC	1 cut(s)	351
VpaK11BI	GGWCC	1 cut(s)	371
XagI	CCTNNNNNAGG	1 cut(s)	366
XspI	CTAG	1 cut(s)	637

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.