Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0009903

Physical Location & Seq

Genomic Coordinates Forward (+)

12566608 .. 12567656

Gene Structure 1049 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g16840.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGAGATTTTCGTGTCGTTTCCCCGCCTAGTTATGGCAATGGCAGTGACTCTTGTCCTGGCTCTGCCAGTCTCCGCGCAAGTTCGTTCCCCTTGTACTGCCAACACGATTGCTAGCTTTTCCTCTTGCATGAGTTTTCTCACTAACAGCAGCGCCAATGGTACAGCACCAACCGCAGACTGCTGCAATTCGCTAAAATCCATCACAAGTACTAGCAGGGACTGTTTTTGCCTCCTTGCGACTGGAGGCGTTCCCTTCCAGTTGCCAATCAACCGGACTCTAGCCATCTCTCTTCCTCGTGCCTGCAACCTCCCTGGCGTCCCTCTCCAATGCCCAGCCGCTGGTGCACCTATTCCTGCTCCAGGTCCTAGCTCCCTGTCGCCAGCTCTTTCTCCTGGAGCTTCACCATCTGCTCCAACAGCTTCCTCTGTCCCAGCACCCACCTCCTCTGCTGAGTCACCAGAATCCGACAACACACCGGATTTAACTCCGCCATCTACAACAGGGGGTTCTGCAGCTCCAAACGCAATTCCTGGGAGCCGCCCGGTTCTGACTCCTTCGGCTGCCACACTCTCTTACTCGCCTTCCCTTCTGCTATTGGCATCCGGCACTCTAGCTATGAAGTTTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

211

Amino Acids

20.95

Weight (kDa)

7.49

Isoelectric Point (pI)

66.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009903)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05450 AT3G22620
fragaria_vesca	FvH4_4g16090 FvH4_4g16090
malus_domestica	MD13G1196300.v1.1 MD16G1196800.v1.1
prunus_persica	Prupe.1G017000_v2.0.a1
pyrus_communis	pycom13g16840 pycom16g16560
rosa_chinensis	RchiOBHm_Chr4g0415631
rosa_laevigata	RLG00000008055
rosa_multiflora	Rmu_sc0001194.1_g000009 Rmu_sc0004599.1_g000011 Rmu_sc0038888.1_g000001
rosa_roxburghii	Rroxscaffold_5G00359450
rosa_rugosa	Rorug04G0136100
rosa_samantha	Rh4AG196600 Rh4BG195200 Rh4CG207400 Rh4DG194500
rosa_wichuraiana	Rw4G016720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	341
AccII	CGCG	1 cut(s)	77
AciI	CCGC	6 cut(s)	25, 75, 174, 339, 491, 541
AcyI	GRCGYC	1 cut(s)	318
AfaI	GTAC	3 cut(s)	97, 163, 211
AfiI	CCNNNNNNNGG	3 cut(s)	34, 341, 362
AjnI	CCWGG	5 cut(s)	57, 313, 361, 394, 532
AluBI	AGCT	7 cut(s)	117, 372, 386, 401, 422, 518, 617
AluI	AGCT	7 cut(s)	117, 372, 386, 401, 422, 518, 617
Alw21I	GWGCWC	1 cut(s)	349
Alw26I	GTCTC	1 cut(s)	76
Alw44I	GTGCAC	1 cut(s)	345
AlwNI	CAGNNNCTG	2 cut(s)	222, 341
ApaLI	GTGCAC	1 cut(s)	345
ApeKI	GCWGC	4 cut(s)	150, 183, 515, 563
Asp700I	GAANNNNTTC	1 cut(s)	626
AspLEI	GCGC	2 cut(s)	79, 155
AspS9I	GGNCC	1 cut(s)	365
AsuC2I	CCSGG	1 cut(s)	545
AsuHPI	GGTGA	2 cut(s)	396, 450
AsuNHI	GCTAGC	1 cut(s)	113
AvaII	GGWCC	1 cut(s)	365
BaeGI	GKGCMC	1 cut(s)	349
BauI	CACGAG	1 cut(s)	297
Bbv12I	GWGCWC	1 cut(s)	349
BbvI	GCAGC	4 cut(s)	162, 170, 527, 550
BccI	CCATC	4 cut(s)	209, 293, 415, 502
BciT130I	CCWGG	5 cut(s)	59, 315, 363, 396, 534
BcnI	CCSGG	1 cut(s)	545
BcoDI	GTCTC	1 cut(s)	76
BfaI	CTAG	7 cut(s)	29, 114, 213, 281, 369, 614, 631
BfmI	CTRYAG	1 cut(s)	513
BfoI	RGCGCY	1 cut(s)	156
BisI	GCNGC	6 cut(s)	151, 184, 339, 516, 541, 564
BlsI	GCNGC	6 cut(s)	152, 185, 340, 517, 542, 565
BmcAI	AGTACT	1 cut(s)	211
Bme1390I	CCNGG	6 cut(s)	59, 315, 363, 396, 534, 545
Bme18I	GGWCC	1 cut(s)	365
BmgT120I	GGNCC	1 cut(s)	365
BmiI	GGNNCC	1 cut(s)	539
BmrFI	CCNGG	6 cut(s)	59, 315, 363, 396, 534, 545
BmsI	GCATC	1 cut(s)	611
BmtI	GCTAGC	1 cut(s)	117
BoxI	GACNNNNGTC	1 cut(s)	53
BpmI	CTGGAG	3 cut(s)	264, 345, 417
BpuMI	CCSGG	1 cut(s)	545
BsaHI	GRCGYC	1 cut(s)	318
BsaJI	CCNNGG	2 cut(s)	313, 533
BsaWI	WCCGGW	2 cut(s)	273, 478
Bsc4I	CCNNNNNNNGG	3 cut(s)	34, 341, 362
Bse1I	ACTGG	3 cut(s)	68, 247, 259
Bse3DI	GCAATG	1 cut(s)	45
BseBI	CCWGG	5 cut(s)	59, 315, 363, 396, 534
BseDI	CCNNGG	2 cut(s)	313, 533
BseGI	GGATG	1 cut(s)	602
BseLI	CCNNNNNNNGG	3 cut(s)	34, 341, 362
BseMI	GCAATG	1 cut(s)	45
BseMII	CTCAG	1 cut(s)	444
BseNI	ACTGG	3 cut(s)	68, 247, 259
BseRI	GAGGAG	1 cut(s)	436
BseSI	GKGCMC	1 cut(s)	349
BseXI	GCAGC	4 cut(s)	162, 170, 527, 550
BseYI	CCCAGC	2 cut(s)	334, 433
Bsh1236I	CGCG	1 cut(s)	77
BsiHKAI	GWGCWC	1 cut(s)	349
BsiSI	CCGG	4 cut(s)	274, 479, 545, 606
BslFI	GGGAC	3 cut(s)	233, 305, 416
BslI	CCNNNNNNNGG	3 cut(s)	34, 341, 362
BsmAI	GTCTC	1 cut(s)	76
BsmFI	GGGAC	3 cut(s)	233, 305, 416
Bsp1286I	GDGCHC	1 cut(s)	349
BspACI	CCGC	6 cut(s)	25, 75, 174, 339, 491, 541
BspCNI	CTCAG	1 cut(s)	445
BspFNI	CGCG	1 cut(s)	77
BspLI	GGNNCC	1 cut(s)	539
BspMAI	CTGCAG	1 cut(s)	517
BspOI	GCTAGC	1 cut(s)	117
BsrDI	GCAATG	1 cut(s)	45
BsrI	ACTGG	3 cut(s)	68, 247, 259
BssECI	CCNNGG	2 cut(s)	313, 533
BssNI	GRCGYC	1 cut(s)	318
BssSI	CACGAG	1 cut(s)	297
Bst2BI	CACGAG	1 cut(s)	297
Bst2UI	CCWGG	5 cut(s)	59, 315, 363, 396, 534
Bst4CI	ACNGT	1 cut(s)	224
Bst6I	CTCTTC	1 cut(s)	297
BstACI	GRCGYC	1 cut(s)	318
BstC8I	GCNNGC	3 cut(s)	115, 304, 384
BstDEI	CTNAG	1 cut(s)	453
BstENI	CCTNNNNNAGG	1 cut(s)	360
BstF5I	GGATG	1 cut(s)	602
BstFNI	CGCG	1 cut(s)	77
BstH2I	RGCGCY	1 cut(s)	156
BstHHI	GCGC	2 cut(s)	79, 155
BstMAI	GTCTC	1 cut(s)	76
BstMWI	GCNNNNNNNGC	4 cut(s)	173, 344, 419, 524
BstNI	CCWGG	5 cut(s)	59, 315, 363, 396, 534
BstPAI	GACNNNNGTC	1 cut(s)	53
BstSCI	CCNGG	6 cut(s)	57, 313, 361, 394, 532, 543
BstSFI	CTRYAG	1 cut(s)	513
BstSLI	GKGCMC	1 cut(s)	349
BstUI	CGCG	1 cut(s)	77
BstV1I	GCAGC	4 cut(s)	162, 170, 527, 550
BtsCI	GGATG	1 cut(s)	602
BtsI	GCAGTG	1 cut(s)	51
BtsIMutI	CAGTG	1 cut(s)	51
Cac8I	GCNNGC	3 cut(s)	115, 304, 384
CaiI	CAGNNNCTG	2 cut(s)	222, 341
CfoI	GCGC	2 cut(s)	79, 155
Cfr13I	GGNCC	1 cut(s)	365
CseI	GACGC	1 cut(s)	307
Csp6I	GTAC	3 cut(s)	96, 162, 210
CviAII	CATG	1 cut(s)	130
CviQI	GTAC	3 cut(s)	96, 162, 210
DdeI	CTNAG	1 cut(s)	453
Eam1104I	CTCTTC	1 cut(s)	297
EarI	CTCTTC	1 cut(s)	297
EciI	GGCGGA	1 cut(s)	480
Eco47I	GGWCC	1 cut(s)	365
EcoNI	CCTNNNNNAGG	1 cut(s)	360
EcoO109I	RGGNCCY	1 cut(s)	365
EcoRII	CCWGG	5 cut(s)	57, 313, 361, 394, 532
FaeI	CATG	1 cut(s)	133
FaiI	YATR	3 cut(s)	35, 131, 620
FaqI	GGGAC	3 cut(s)	233, 305, 416
FatI	CATG	1 cut(s)	129
FauI	CCCGC	1 cut(s)	32
Fnu4HI	GCNGC	6 cut(s)	151, 184, 339, 516, 541, 564
FokI	GGATG	1 cut(s)	589
Fsp4HI	GCNGC	6 cut(s)	151, 184, 339, 516, 541, 564
FspBI	CTAG	7 cut(s)	29, 114, 213, 281, 369, 614, 631
GlaI	GCGC	2 cut(s)	78, 154
GluI	GCNGC	6 cut(s)	151, 184, 339, 516, 541, 564
GsaI	CCCAGC	2 cut(s)	338, 437
GsuI	CTGGAG	3 cut(s)	264, 345, 417
HaeII	RGCGCY	1 cut(s)	156
HapII	CCGG	4 cut(s)	274, 479, 545, 606
HgaI	GACGC	1 cut(s)	307
HhaI	GCGC	2 cut(s)	79, 155
Hin1I	GRCGYC	1 cut(s)	318
Hin1II	CATG	1 cut(s)	133
Hin6I	GCGC	2 cut(s)	77, 153
HinP1I	GCGC	2 cut(s)	77, 153
HinfI	GANTC	5 cut(s)	49, 277, 455, 464, 553
HpaII	CCGG	4 cut(s)	274, 479, 545, 606
HphI	GGTGA	2 cut(s)	396, 450
Hpy166II	GTNNAC	1 cut(s)	347
Hpy188I	TCNGA	2 cut(s)	469, 552
Hpy8I	GTNNAC	1 cut(s)	347
HpyAV	CCTTC	4 cut(s)	265, 567, 594, 599
HpyCH4III	ACNGT	1 cut(s)	224
HpyCH4V	TGCA	5 cut(s)	129, 186, 306, 347, 515
HpyF10VI	GCNNNNNNNGC	4 cut(s)	173, 344, 419, 524
HpyF3I	CTNAG	1 cut(s)	453
Hsp92I	GRCGYC	1 cut(s)	318
Hsp92II	CATG	1 cut(s)	133
HspAI	GCGC	2 cut(s)	77, 153
LmnI	GCTCC	6 cut(s)	364, 377, 398, 418, 523, 537
Lsp1109I	GCAGC	4 cut(s)	162, 170, 527, 550
LweI	GCATC	1 cut(s)	611
MaeI	CTAG	7 cut(s)	29, 114, 213, 281, 369, 614, 631
MaeIII	GTNAC	2 cut(s)	46, 456
MboII	GAAGA	1 cut(s)	284
MhlI	GDGCHC	1 cut(s)	349
MluCI	AATT	2 cut(s)	187, 528
MlyI	GAGTC	4 cut(s)	43, 271, 464, 547
MmeI	TCCRAC	2 cut(s)	440, 492
MnlI	CCTC	9 cut(s)	133, 239, 242, 306, 320, 333, 436, 454, 457
MroXI	GAANNNNTTC	1 cut(s)	626
MseI	TTAA	1 cut(s)	485
MspA1I	CMGCKG	1 cut(s)	341
MspI	CCGG	4 cut(s)	274, 479, 545, 606
MspR9I	CCNGG	6 cut(s)	59, 315, 363, 396, 534, 545
MvaI	CCWGG	5 cut(s)	59, 315, 363, 396, 534
MvnI	CGCG	1 cut(s)	77
MwoI	GCNNNNNNNGC	4 cut(s)	173, 344, 419, 524
NciI	CCSGG	1 cut(s)	545
NheI	GCTAGC	1 cut(s)	113
NlaIII	CATG	1 cut(s)	133
NlaIV	GGNNCC	1 cut(s)	539
NmuCI	GTSAC	2 cut(s)	46, 456
PdmI	GAANNNNTTC	1 cut(s)	626
PfeI	GAWTC	1 cut(s)	464
PflMI	CCANNNNNTGG	1 cut(s)	341
PfoI	TCCNGGA	1 cut(s)	394
PkrI	GCNGC	6 cut(s)	152, 185, 340, 517, 542, 565
PleI	GAGTC	4 cut(s)	43, 271, 463, 547
PpsI	GAGTC	4 cut(s)	43, 271, 463, 547
PpuMI	RGGWCCY	1 cut(s)	365
PshAI	GACNNNNGTC	1 cut(s)	53
Psp5II	RGGWCCY	1 cut(s)	365
Psp6I	CCWGG	5 cut(s)	57, 313, 361, 394, 532
PspFI	CCCAGC	2 cut(s)	334, 433
PspGI	CCWGG	5 cut(s)	57, 313, 361, 394, 532
PspN4I	GGNNCC	1 cut(s)	539
PspPI	GGNCC	1 cut(s)	365
PspPPI	RGGWCCY	1 cut(s)	365
PstI	CTGCAG	1 cut(s)	517
PstNI	CAGNNNCTG	2 cut(s)	222, 341
RsaI	GTAC	3 cut(s)	97, 163, 211
RsaNI	GTAC	3 cut(s)	96, 162, 210
SaqAI	TTAA	1 cut(s)	485
SatI	GCNGC	6 cut(s)	151, 184, 339, 516, 541, 564
Sau96I	GGNCC	1 cut(s)	365
ScaI	AGTACT	1 cut(s)	211
SchI	GAGTC	4 cut(s)	43, 271, 464, 547
ScrFI	CCNGG	6 cut(s)	59, 315, 363, 396, 534, 545
SduI	GDGCHC	1 cut(s)	349
SfaNI	GCATC	1 cut(s)	611
SfcI	CTRYAG	1 cut(s)	513
SinI	GGWCC	1 cut(s)	365
Sse9I	AATT	2 cut(s)	187, 528
SsiI	CCGC	6 cut(s)	25, 75, 174, 339, 491, 541
SspMI	CTAG	7 cut(s)	29, 114, 213, 281, 369, 614, 631
StyD4I	CCNGG	6 cut(s)	57, 313, 361, 394, 532, 543
TaaI	ACNGT	1 cut(s)	224
TasI	AATT	2 cut(s)	187, 528
TatI	WGTACW	2 cut(s)	95, 209
TauI	GCSGC	2 cut(s)	341, 543
TfiI	GAWTC	1 cut(s)	464
Tru1I	TTAA	1 cut(s)	485
Tru9I	TTAA	1 cut(s)	485
TscAI	CASTG	1 cut(s)	51
TseFI	GTSAC	2 cut(s)	46, 456
TseI	GCWGC	4 cut(s)	150, 183, 515, 563
Tsp45I	GTSAC	2 cut(s)	46, 456
TspRI	CASTG	1 cut(s)	51
Van91I	CCANNNNNTGG	1 cut(s)	341
VneI	GTGCAC	1 cut(s)	345
VpaK11BI	GGWCC	1 cut(s)	365
XagI	CCTNNNNNAGG	1 cut(s)	360
XmnI	GAANNNNTTC	1 cut(s)	626
XspI	CTAG	7 cut(s)	29, 114, 213, 281, 369, 614, 631
ZrmI	AGTACT	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.