Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0009903

Physical Location & Seq

Genomic Coordinates Forward (+)

1187202 .. 1189030

Gene Structure 1829 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G017000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGAGATTTCAGTGCCTTTTTTCCGTCTAGCTATGGCATTGGCAATGACTGTGGTCTTGGCTATGCCTGTCTATGGCCAAGTTGGTTCCCCTTGCAATGCTTCGGCGATTTCTAGCTTGACCCCTTGCATGAGTTTTCTCACTAATAGCAGCTCCAATGGAACCTCACCAACCGCAGACTGCTGCAATTCACTAAAAGCCCTCACAAGTACCAGCAGAGATTGCTTTTGCCTAATTGTAACTGGAAGTGTTCCCTTCCAACTACCGATCAACCGTTCTCTAGCCATCTCTCTCCCTCGTGCCTGCAACATCCCCGGCGTCCCACTCCAATGCCAAGCCACAGTTGCACCTATTCCTGCTCCAGGTCCTAGCTCCCTTGCGCCAACCCTCTCTCCTGGAGCTTCACCATCTGGTCCAACAGCTTCCTCTGTCCCAGAGCCAACCTCATCTGCTCTGTCACCAGAATCCGACACAACACCACTTTTAACTCCGCCATCTACAACAGGAGGCTCTGGAGCTCCAACCTCAACTACAGGCAGCCGCCCTGTTCTGACTCCTTCGGCAGCCTTTACCTCTTGTCGTCTCTCACCCTCTCTTATGCTTTTTGCATCAGGCATTCTGGCTTTGAAGTTTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

213

Amino Acids

21.33

Weight (kDa)

8.11

Isoelectric Point (pI)

61.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009903)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05450 AT3G22620
fragaria_vesca	FvH4_4g16090 FvH4_4g16090
malus_domestica	MD13G1196300.v1.1 MD16G1196800.v1.1
prunus_persica	Prupe.1G017000_v2.0.a1
pyrus_communis	pycom13g16840 pycom16g16560
rosa_chinensis	RchiOBHm_Chr4g0415631
rosa_laevigata	RLG00000008055
rosa_multiflora	Rmu_sc0001194.1_g000009 Rmu_sc0004599.1_g000011 Rmu_sc0038888.1_g000001
rosa_roxburghii	Rroxscaffold_5G00359450
rosa_rugosa	Rorug04G0136100
rosa_samantha	Rh4AG196600 Rh4BG195200 Rh4CG207400 Rh4DG194500
rosa_wichuraiana	Rw4G016720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	174, 491, 541
AcoI	YGGCCR	1 cut(s)	76
AcyI	GRCGYC	1 cut(s)	318
AfaI	GTAC	1 cut(s)	211
AfiI	CCNNNNNNNGG	2 cut(s)	74, 362
AgsI	TTSAA	1 cut(s)	628
AjnI	CCWGG	2 cut(s)	361, 394
AluBI	AGCT	7 cut(s)	32, 117, 153, 372, 401, 422, 518
AluI	AGCT	7 cut(s)	32, 117, 153, 372, 401, 422, 518
Alw21I	GWGCWC	1 cut(s)	520
Alw26I	GTCTC	1 cut(s)	587
AoxI	GGCC	1 cut(s)	76
ApeKI	GCWGC	4 cut(s)	150, 183, 537, 563
Asp700I	GAANNNNTTC	1 cut(s)	632
AspLEI	GCGC	1 cut(s)	382
AspS9I	GGNCC	2 cut(s)	365, 413
AsuC2I	CCSGG	1 cut(s)	315
AsuHPI	GGTGA	4 cut(s)	159, 396, 450, 579
AvaII	GGWCC	2 cut(s)	365, 413
BalI	TGGCCA	1 cut(s)	78
BanII	GRGCYC	1 cut(s)	520
BauI	CACGAG	1 cut(s)	297
Bbv12I	GWGCWC	1 cut(s)	520
BbvI	GCAGC	4 cut(s)	162, 170, 549, 575
BccI	CCATC	3 cut(s)	293, 415, 502
BciT130I	CCWGG	2 cut(s)	363, 396
BcnI	CCSGG	1 cut(s)	315
BcoDI	GTCTC	1 cut(s)	587
BfaI	CTAG	5 cut(s)	29, 114, 281, 369, 637
BfmI	CTRYAG	1 cut(s)	531
BisI	GCNGC	5 cut(s)	151, 184, 538, 541, 564
BlsI	GCNGC	5 cut(s)	152, 185, 539, 542, 565
Bme1390I	CCNGG	3 cut(s)	315, 363, 396
Bme18I	GGWCC	2 cut(s)	365, 413
BmgT120I	GGNCC	2 cut(s)	365, 413
BmiI	GGNNCC	2 cut(s)	88, 163
BmrFI	CCNGG	3 cut(s)	315, 363, 396
BmsI	GCATC	1 cut(s)	617
BoxI	GACNNNNGTC	1 cut(s)	53
BplI	GAGNNNNNCTC	2 cut(s)	428, 460
BpmI	CTGGAG	3 cut(s)	345, 417, 534
BpuMI	CCSGG	1 cut(s)	315
BsaHI	GRCGYC	1 cut(s)	318
BsaJI	CCNNGG	1 cut(s)	313
BsaXI	ACNNNNNCTCC	2 cut(s)	376, 406
Bsc4I	CCNNNNNNNGG	2 cut(s)	74, 362
Bse1I	ACTGG	1 cut(s)	247
Bse3DI	GCAATG	2 cut(s)	51, 103
BseBI	CCWGG	2 cut(s)	363, 396
BseDI	CCNNGG	1 cut(s)	313
BseGI	GGATG	1 cut(s)	309
BseLI	CCNNNNNNNGG	2 cut(s)	74, 362
BseMI	GCAATG	2 cut(s)	51, 103
BseNI	ACTGG	1 cut(s)	247
BseXI	GCAGC	4 cut(s)	162, 170, 549, 575
BshFI	GGCC	1 cut(s)	78
BsiHKAI	GWGCWC	1 cut(s)	520
BsiSI	CCGG	1 cut(s)	315
BslFI	GGGAC	2 cut(s)	305, 416
BslI	CCNNNNNNNGG	2 cut(s)	74, 362
BsmAI	GTCTC	1 cut(s)	587
BsmBI	CGTCTC	1 cut(s)	587
BsmFI	GGGAC	2 cut(s)	305, 416
BsmI	GAATGC	1 cut(s)	615
BsnI	GGCC	1 cut(s)	78
Bsp1286I	GDGCHC	1 cut(s)	520
Bsp143I	GATC	1 cut(s)	267
BspACI	CCGC	3 cut(s)	174, 491, 541
BspANI	GGCC	1 cut(s)	78
BspLI	GGNNCC	2 cut(s)	88, 163
BsrDI	GCAATG	2 cut(s)	51, 103
BsrI	ACTGG	1 cut(s)	247
BssECI	CCNNGG	1 cut(s)	313
BssMI	GATC	1 cut(s)	267
BssNI	GRCGYC	1 cut(s)	318
BssSI	CACGAG	1 cut(s)	297
Bst2BI	CACGAG	1 cut(s)	297
Bst2UI	CCWGG	2 cut(s)	363, 396
Bst4CI	ACNGT	3 cut(s)	52, 275, 343
BstACI	GRCGYC	1 cut(s)	318
BstAPI	GCANNNNNTGC	1 cut(s)	222
BstC8I	GCNNGC	1 cut(s)	304
BstENI	CCTNNNNNAGG	1 cut(s)	360
BstF5I	GGATG	1 cut(s)	309
BstHHI	GCGC	1 cut(s)	382
BstKTI	GATC	1 cut(s)	270
BstMAI	GTCTC	1 cut(s)	587
BstMBI	GATC	1 cut(s)	267
BstMWI	GCNNNNNNNGC	2 cut(s)	222, 344
BstNI	CCWGG	2 cut(s)	363, 396
BstPAI	GACNNNNGTC	1 cut(s)	53
BstSCI	CCNGG	3 cut(s)	313, 361, 394
BstSFI	CTRYAG	1 cut(s)	531
BstV1I	GCAGC	4 cut(s)	162, 170, 549, 575
BsuRI	GGCC	1 cut(s)	78
BtsCI	GGATG	1 cut(s)	309
BtsIMutI	CAGTG	1 cut(s)	18
Cac8I	GCNNGC	1 cut(s)	304
CfoI	GCGC	1 cut(s)	382
Cfr13I	GGNCC	2 cut(s)	365, 413
CseI	GACGC	1 cut(s)	307
Csp6I	GTAC	1 cut(s)	210
CspCI	CAANNNNNGTGG	2 cut(s)	33, 68
CviAII	CATG	1 cut(s)	130
CviQI	GTAC	1 cut(s)	210
DpnI	GATC	1 cut(s)	269
DpnII	GATC	1 cut(s)	267
EaeI	YGGCCR	1 cut(s)	76
EciI	GGCGGA	1 cut(s)	480
Ecl136II	GAGCTC	1 cut(s)	518
Eco24I	GRGCYC	1 cut(s)	520
Eco47I	GGWCC	2 cut(s)	365, 413
Eco53kI	GAGCTC	1 cut(s)	518
EcoICRI	GAGCTC	1 cut(s)	518
EcoNI	CCTNNNNNAGG	1 cut(s)	360
EcoO109I	RGGNCCY	1 cut(s)	365
EcoRII	CCWGG	2 cut(s)	361, 394
EcoT38I	GRGCYC	1 cut(s)	520
Esp3I	CGTCTC	1 cut(s)	587
FaeI	CATG	1 cut(s)	133
FaiI	YATR	5 cut(s)	35, 65, 75, 131, 599
FaqI	GGGAC	2 cut(s)	305, 416
FatI	CATG	1 cut(s)	129
Fnu4HI	GCNGC	5 cut(s)	151, 184, 538, 541, 564
FokI	GGATG	1 cut(s)	296
FriOI	GRGCYC	1 cut(s)	520
Fsp4HI	GCNGC	5 cut(s)	151, 184, 538, 541, 564
FspBI	CTAG	5 cut(s)	29, 114, 281, 369, 637
GlaI	GCGC	1 cut(s)	381
GluI	GCNGC	5 cut(s)	151, 184, 538, 541, 564
GsuI	CTGGAG	3 cut(s)	345, 417, 534
HaeIII	GGCC	1 cut(s)	78
HapII	CCGG	1 cut(s)	315
HgaI	GACGC	1 cut(s)	307
HhaI	GCGC	1 cut(s)	382
Hin1I	GRCGYC	1 cut(s)	318
Hin1II	CATG	1 cut(s)	133
Hin6I	GCGC	1 cut(s)	380
HinP1I	GCGC	1 cut(s)	380
HinfI	GANTC	2 cut(s)	464, 553
HpaII	CCGG	1 cut(s)	315
HphI	GGTGA	4 cut(s)	159, 396, 450, 579
Hpy188I	TCNGA	2 cut(s)	469, 552
Hpy188III	TCNNGA	1 cut(s)	513
HpyAV	CCTTC	2 cut(s)	265, 567
HpyCH4III	ACNGT	3 cut(s)	52, 275, 343
HpyCH4V	TGCA	6 cut(s)	96, 129, 186, 306, 347, 608
HpyF10VI	GCNNNNNNNGC	2 cut(s)	222, 344
Hsp92I	GRCGYC	1 cut(s)	318
Hsp92II	CATG	1 cut(s)	133
HspAI	GCGC	1 cut(s)	380
Kzo9I	GATC	1 cut(s)	267
LmnI	GCTCC	6 cut(s)	158, 364, 377, 398, 515, 523
Lsp1109I	GCAGC	4 cut(s)	162, 170, 549, 575
LweI	GCATC	1 cut(s)	617
MaeI	CTAG	5 cut(s)	29, 114, 281, 369, 637
MaeIII	GTNAC	2 cut(s)	238, 456
MalI	GATC	1 cut(s)	269
MboI	GATC	1 cut(s)	267
MhlI	GDGCHC	1 cut(s)	520
MlsI	TGGCCA	1 cut(s)	78
MluCI	AATT	2 cut(s)	187, 234
MluNI	TGGCCA	1 cut(s)	78
MlyI	GAGTC	1 cut(s)	547
MmeI	TCCRAC	4 cut(s)	283, 440, 492, 545
Mox20I	TGGCCA	1 cut(s)	78
MroXI	GAANNNNTTC	1 cut(s)	632
MscI	TGGCCA	1 cut(s)	78
MseI	TTAA	1 cut(s)	485
MslI	CAYNNNNRTG	1 cut(s)	328
Msp20I	TGGCCA	1 cut(s)	78
MspI	CCGG	1 cut(s)	315
MspR9I	CCNGG	3 cut(s)	315, 363, 396
Mva1269I	GAATGC	1 cut(s)	615
MvaI	CCWGG	2 cut(s)	363, 396
MwoI	GCNNNNNNNGC	2 cut(s)	222, 344
NciI	CCSGG	1 cut(s)	315
NdeII	GATC	1 cut(s)	267
NlaIII	CATG	1 cut(s)	133
NlaIV	GGNNCC	2 cut(s)	88, 163
NmuCI	GTSAC	1 cut(s)	456
PctI	GAATGC	1 cut(s)	615
PdmI	GAANNNNTTC	1 cut(s)	632
PfeI	GAWTC	1 cut(s)	464
PfoI	TCCNGGA	1 cut(s)	394
PkrI	GCNGC	5 cut(s)	152, 185, 539, 542, 565
PleI	GAGTC	1 cut(s)	547
PpsI	GAGTC	1 cut(s)	547
PpuMI	RGGWCCY	1 cut(s)	365
PshAI	GACNNNNGTC	1 cut(s)	53
Psp124BI	GAGCTC	1 cut(s)	520
Psp5II	RGGWCCY	1 cut(s)	365
Psp6I	CCWGG	2 cut(s)	361, 394
PspGI	CCWGG	2 cut(s)	361, 394
PspN4I	GGNNCC	2 cut(s)	88, 163
PspPI	GGNCC	2 cut(s)	365, 413
PspPPI	RGGWCCY	1 cut(s)	365
RsaI	GTAC	1 cut(s)	211
RsaNI	GTAC	1 cut(s)	210
RseI	CAYNNNNRTG	1 cut(s)	328
SacI	GAGCTC	1 cut(s)	520
SaqAI	TTAA	1 cut(s)	485
SatI	GCNGC	5 cut(s)	151, 184, 538, 541, 564
Sau3AI	GATC	1 cut(s)	267
Sau96I	GGNCC	2 cut(s)	365, 413
SchI	GAGTC	1 cut(s)	547
ScrFI	CCNGG	3 cut(s)	315, 363, 396
SduI	GDGCHC	1 cut(s)	520
SfaNI	GCATC	1 cut(s)	617
SfcI	CTRYAG	1 cut(s)	531
SinI	GGWCC	2 cut(s)	365, 413
SmiMI	CAYNNNNRTG	1 cut(s)	328
Sse9I	AATT	2 cut(s)	187, 234
SsiI	CCGC	3 cut(s)	174, 491, 541
SspMI	CTAG	5 cut(s)	29, 114, 281, 369, 637
SstI	GAGCTC	1 cut(s)	520
StyD4I	CCNGG	3 cut(s)	313, 361, 394
TaaI	ACNGT	3 cut(s)	52, 275, 343
TasI	AATT	2 cut(s)	187, 234
TauI	GCSGC	1 cut(s)	543
TfiI	GAWTC	1 cut(s)	464
Tru1I	TTAA	1 cut(s)	485
Tru9I	TTAA	1 cut(s)	485
TscAI	CASTG	1 cut(s)	18
TseFI	GTSAC	1 cut(s)	456
TseI	GCWGC	4 cut(s)	150, 183, 537, 563
Tsp45I	GTSAC	1 cut(s)	456
TspGWI	ACGGA	1 cut(s)	14
TspRI	CASTG	1 cut(s)	18
VpaK11BI	GGWCC	2 cut(s)	365, 413
XagI	CCTNNNNNAGG	1 cut(s)	360
XmnI	GAANNNNTTC	1 cut(s)	632
XspI	CTAG	5 cut(s)	29, 114, 281, 369, 637

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.