Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0009903

Physical Location & Seq

Genomic Coordinates Forward (+)

17069067 .. 17070323

Gene Structure 1257 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1196300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGAGATTTTTGTGCCGTTTCCCCGTCTAGTTATGGCAATGGCAGTGGCCCTGGTCCTGGCTCTGCCAGCCTCCGCGCAAGTTGGTTCCCCATGTACTGCCAACACGATTGCTAGCTTTTCCTCTTGCATGAGTTTTCCCACTAATAGCAGCGCCAATGGTACATTACCAACCGCAGCCTGCTGCAATTCGCTAAAATCCATCACAAGTACTAGCAGGGACTGTTGGTGCCTCCTTGTGAATGGAAGCGTTCCCTTCCAGTTGCCAATCAACCGGACTCTAGCCATCTCTCTTCCTCGTGCCTGCAACCTCCCTGGCGTCCCTCTCCAATGCCCAGCCGCTGGTGCACCTATTCGTGCTCCAGGTCCTAGATCCCTGTCGCCAACTCTTTCTCCTGGAGCTTCACCATCTGCTCCTACAGCTTCCTCTGTCCCAGCACCCACCTCATCTGCTGAGTCACCAGAATCCGACAACACACCAGATTTAACTCCGCCATCCACAACAGGGGGTTCTGGAGCTCCAAACGCAACTCCTGGGAGCCGCCCGGTTGTGACTCCATCGGCTGCTACACCCTCTTACTCGCCTTCCCTTCTGCTATTGGCATCCGGCATTCTAGCTATGAAGTTTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

211

Amino Acids

21.01

Weight (kDa)

8.5

Isoelectric Point (pI)

69.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	13 - 111	3.1e-18	Probable lipid transfer
Tryp_alpha_amyl	PF00234	37 - 111	2.3e-06	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009903)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05450 AT3G22620
fragaria_vesca	FvH4_4g16090 FvH4_4g16090
malus_domestica	MD13G1196300.v1.1 MD16G1196800.v1.1
prunus_persica	Prupe.1G017000_v2.0.a1
pyrus_communis	pycom13g16840 pycom16g16560
rosa_chinensis	RchiOBHm_Chr4g0415631
rosa_laevigata	RLG00000008055
rosa_multiflora	Rmu_sc0001194.1_g000009 Rmu_sc0004599.1_g000011 Rmu_sc0038888.1_g000001
rosa_roxburghii	Rroxscaffold_5G00359450
rosa_rugosa	Rorug04G0136100
rosa_samantha	Rh4AG196600 Rh4BG195200 Rh4CG207400 Rh4DG194500
rosa_wichuraiana	Rw4G016720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	228
AccB7I	CCANNNNNTGG	1 cut(s)	341
AccII	CGCG	1 cut(s)	77
AciI	CCGC	5 cut(s)	75, 174, 339, 491, 541
AclWI	GGATC	1 cut(s)	366
AcyI	GRCGYC	1 cut(s)	318
AfaI	GTAC	3 cut(s)	97, 163, 211
AfiI	CCNNNNNNNGG	3 cut(s)	58, 341, 504
AjnI	CCWGG	6 cut(s)	51, 57, 313, 361, 394, 532
AluBI	AGCT	5 cut(s)	117, 401, 422, 518, 617
AluI	AGCT	5 cut(s)	117, 401, 422, 518, 617
Alw21I	GWGCWC	3 cut(s)	349, 361, 520
Alw44I	GTGCAC	1 cut(s)	345
AlwI	GGATC	1 cut(s)	366
AlwNI	CAGNNNCTG	2 cut(s)	222, 341
AoxI	GGCC	1 cut(s)	48
ApaLI	GTGCAC	1 cut(s)	345
ApeKI	GCWGC	4 cut(s)	150, 176, 183, 563
Asp700I	GAANNNNTTC	1 cut(s)	626
AspLEI	GCGC	2 cut(s)	79, 155
AspS9I	GGNCC	3 cut(s)	49, 55, 365
AsuC2I	CCSGG	1 cut(s)	545
AsuHPI	GGTGA	2 cut(s)	396, 450
AsuNHI	GCTAGC	1 cut(s)	113
AvaII	GGWCC	2 cut(s)	55, 365
BaeGI	GKGCMC	1 cut(s)	349
BanI	GGYRCC	1 cut(s)	228
BanII	GRGCYC	1 cut(s)	520
BauI	CACGAG	1 cut(s)	297
Bbv12I	GWGCWC	3 cut(s)	349, 361, 520
BbvI	GCAGC	4 cut(s)	162, 170, 188, 550
BccI	CCATC	5 cut(s)	209, 293, 415, 502, 565
BciT130I	CCWGG	6 cut(s)	53, 59, 315, 363, 396, 534
BcnI	CCSGG	1 cut(s)	545
BfaI	CTAG	7 cut(s)	29, 114, 213, 281, 369, 614, 631
BfmI	CTRYAG	1 cut(s)	417
BfoI	RGCGCY	1 cut(s)	156
BisI	GCNGC	6 cut(s)	151, 177, 184, 339, 541, 564
BlsI	GCNGC	6 cut(s)	152, 178, 185, 340, 542, 565
BmcAI	AGTACT	1 cut(s)	211
Bme1390I	CCNGG	7 cut(s)	53, 59, 315, 363, 396, 534, 545
Bme18I	GGWCC	2 cut(s)	55, 365
BmgT120I	GGNCC	3 cut(s)	49, 55, 365
BmiI	GGNNCC	3 cut(s)	88, 230, 539
BmrFI	CCNGG	7 cut(s)	53, 59, 315, 363, 396, 534, 545
BmsI	GCATC	1 cut(s)	611
BmtI	GCTAGC	1 cut(s)	117
BpmI	CTGGAG	3 cut(s)	345, 417, 534
BpuMI	CCSGG	1 cut(s)	545
BsaHI	GRCGYC	1 cut(s)	318
BsaJI	CCNNGG	3 cut(s)	51, 313, 533
BsaWI	WCCGGW	1 cut(s)	273
BsaXI	ACNNNNNCTCC	2 cut(s)	376, 406
Bsc4I	CCNNNNNNNGG	3 cut(s)	58, 341, 504
Bse1I	ACTGG	1 cut(s)	259
Bse3DI	GCAATG	1 cut(s)	45
BseBI	CCWGG	6 cut(s)	53, 59, 315, 363, 396, 534
BseDI	CCNNGG	3 cut(s)	51, 313, 533
BseGI	GGATG	2 cut(s)	494, 602
BseLI	CCNNNNNNNGG	3 cut(s)	58, 341, 504
BseMI	GCAATG	1 cut(s)	45
BseMII	CTCAG	1 cut(s)	444
BseNI	ACTGG	1 cut(s)	259
BseSI	GKGCMC	1 cut(s)	349
BseXI	GCAGC	4 cut(s)	162, 170, 188, 550
BseYI	CCCAGC	2 cut(s)	334, 433
Bsh1236I	CGCG	1 cut(s)	77
BshFI	GGCC	1 cut(s)	50
BshNI	GGYRCC	1 cut(s)	228
BsiHKAI	GWGCWC	3 cut(s)	349, 361, 520
BsiSI	CCGG	3 cut(s)	274, 545, 606
BslFI	GGGAC	3 cut(s)	233, 305, 416
BslI	CCNNNNNNNGG	3 cut(s)	58, 341, 504
BsmFI	GGGAC	3 cut(s)	233, 305, 416
BsmI	GAATGC	1 cut(s)	609
BsnI	GGCC	1 cut(s)	50
Bsp1286I	GDGCHC	3 cut(s)	349, 361, 520
Bsp143I	GATC	1 cut(s)	371
BspACI	CCGC	5 cut(s)	75, 174, 339, 491, 541
BspANI	GGCC	1 cut(s)	50
BspCNI	CTCAG	1 cut(s)	445
BspFNI	CGCG	1 cut(s)	77
BspLI	GGNNCC	3 cut(s)	88, 230, 539
BspOI	GCTAGC	1 cut(s)	117
BspPI	GGATC	1 cut(s)	366
BspT107I	GGYRCC	1 cut(s)	228
BsrDI	GCAATG	1 cut(s)	45
BsrI	ACTGG	1 cut(s)	259
BssECI	CCNNGG	3 cut(s)	51, 313, 533
BssMI	GATC	1 cut(s)	371
BssNI	GRCGYC	1 cut(s)	318
BssSI	CACGAG	1 cut(s)	297
Bst2BI	CACGAG	1 cut(s)	297
Bst2UI	CCWGG	6 cut(s)	53, 59, 315, 363, 396, 534
Bst4CI	ACNGT	1 cut(s)	224
Bst6I	CTCTTC	1 cut(s)	297
BstACI	GRCGYC	1 cut(s)	318
BstC8I	GCNNGC	4 cut(s)	69, 115, 181, 304
BstDEI	CTNAG	1 cut(s)	453
BstF5I	GGATG	2 cut(s)	494, 602
BstFNI	CGCG	1 cut(s)	77
BstH2I	RGCGCY	1 cut(s)	156
BstHHI	GCGC	2 cut(s)	79, 155
BstKTI	GATC	1 cut(s)	374
BstMBI	GATC	1 cut(s)	371
BstMWI	GCNNNNNNNGC	4 cut(s)	68, 344, 419, 524
BstNI	CCWGG	6 cut(s)	53, 59, 315, 363, 396, 534
BstSCI	CCNGG	7 cut(s)	51, 57, 313, 361, 394, 532, 543
BstSFI	CTRYAG	1 cut(s)	417
BstSLI	GKGCMC	1 cut(s)	349
BstUI	CGCG	1 cut(s)	77
BstV1I	GCAGC	4 cut(s)	162, 170, 188, 550
BstX2I	RGATCY	1 cut(s)	371
BstYI	RGATCY	1 cut(s)	371
BsuRI	GGCC	1 cut(s)	50
BtsCI	GGATG	2 cut(s)	494, 602
BtsI	GCAGTG	1 cut(s)	51
BtsIMutI	CAGTG	1 cut(s)	51
Cac8I	GCNNGC	4 cut(s)	69, 115, 181, 304
CaiI	CAGNNNCTG	2 cut(s)	222, 341
CfoI	GCGC	2 cut(s)	79, 155
Cfr13I	GGNCC	3 cut(s)	49, 55, 365
CseI	GACGC	1 cut(s)	307
Csp6I	GTAC	3 cut(s)	96, 162, 210
CspCI	CAANNNNNGTGG	2 cut(s)	27, 62
CviAII	CATG	2 cut(s)	93, 130
CviQI	GTAC	3 cut(s)	96, 162, 210
DdeI	CTNAG	1 cut(s)	453
DpnI	GATC	1 cut(s)	373
DpnII	GATC	1 cut(s)	371
Eam1104I	CTCTTC	1 cut(s)	297
EarI	CTCTTC	1 cut(s)	297
EciI	GGCGGA	1 cut(s)	480
Ecl136II	GAGCTC	1 cut(s)	518
Eco24I	GRGCYC	1 cut(s)	520
Eco47I	GGWCC	2 cut(s)	55, 365
Eco53kI	GAGCTC	1 cut(s)	518
EcoICRI	GAGCTC	1 cut(s)	518
EcoO109I	RGGNCCY	1 cut(s)	365
EcoRII	CCWGG	6 cut(s)	51, 57, 313, 361, 394, 532
EcoT38I	GRGCYC	1 cut(s)	520
FaeI	CATG	2 cut(s)	96, 133
FaiI	YATR	4 cut(s)	35, 94, 131, 620
FaqI	GGGAC	3 cut(s)	233, 305, 416
FatI	CATG	2 cut(s)	92, 129
Fnu4HI	GCNGC	6 cut(s)	151, 177, 184, 339, 541, 564
FokI	GGATG	2 cut(s)	481, 589
FriOI	GRGCYC	1 cut(s)	520
Fsp4HI	GCNGC	6 cut(s)	151, 177, 184, 339, 541, 564
FspBI	CTAG	7 cut(s)	29, 114, 213, 281, 369, 614, 631
GlaI	GCGC	2 cut(s)	78, 154
GluI	GCNGC	6 cut(s)	151, 177, 184, 339, 541, 564
GsaI	CCCAGC	2 cut(s)	338, 437
GsuI	CTGGAG	3 cut(s)	345, 417, 534
HaeII	RGCGCY	1 cut(s)	156
HaeIII	GGCC	1 cut(s)	50
HapII	CCGG	3 cut(s)	274, 545, 606
HgaI	GACGC	1 cut(s)	307
HhaI	GCGC	2 cut(s)	79, 155
Hin1I	GRCGYC	1 cut(s)	318
Hin1II	CATG	2 cut(s)	96, 133
Hin6I	GCGC	2 cut(s)	77, 153
HinP1I	GCGC	2 cut(s)	77, 153
HinfI	GANTC	4 cut(s)	277, 455, 464, 553
HpaII	CCGG	3 cut(s)	274, 545, 606
HphI	GGTGA	2 cut(s)	396, 450
Hpy166II	GTNNAC	1 cut(s)	347
Hpy188I	TCNGA	1 cut(s)	469
Hpy188III	TCNNGA	1 cut(s)	513
Hpy8I	GTNNAC	1 cut(s)	347
HpyAV	CCTTC	3 cut(s)	265, 594, 599
HpyCH4III	ACNGT	1 cut(s)	224
HpyCH4V	TGCA	4 cut(s)	129, 186, 306, 347
HpyF10VI	GCNNNNNNNGC	4 cut(s)	68, 344, 419, 524
HpyF3I	CTNAG	1 cut(s)	453
Hsp92I	GRCGYC	1 cut(s)	318
Hsp92II	CATG	2 cut(s)	96, 133
HspAI	GCGC	2 cut(s)	77, 153
Kzo9I	GATC	1 cut(s)	371
LmnI	GCTCC	6 cut(s)	364, 398, 418, 515, 523, 537
Lsp1109I	GCAGC	4 cut(s)	162, 170, 188, 550
LweI	GCATC	1 cut(s)	611
MaeI	CTAG	7 cut(s)	29, 114, 213, 281, 369, 614, 631
MaeIII	GTNAC	2 cut(s)	456, 550
MalI	GATC	1 cut(s)	373
MboI	GATC	1 cut(s)	371
MboII	GAAGA	1 cut(s)	284
MflI	RGATCY	1 cut(s)	371
MhlI	GDGCHC	3 cut(s)	349, 361, 520
MluCI	AATT	1 cut(s)	187
MlyI	GAGTC	3 cut(s)	271, 464, 547
MmeI	TCCRAC	1 cut(s)	492
MnlI	CCTC	9 cut(s)	82, 133, 242, 306, 320, 333, 436, 454, 583
MroXI	GAANNNNTTC	1 cut(s)	626
MseI	TTAA	1 cut(s)	485
MspA1I	CMGCKG	1 cut(s)	341
MspI	CCGG	3 cut(s)	274, 545, 606
MspR9I	CCNGG	7 cut(s)	53, 59, 315, 363, 396, 534, 545
Mva1269I	GAATGC	1 cut(s)	609
MvaI	CCWGG	6 cut(s)	53, 59, 315, 363, 396, 534
MvnI	CGCG	1 cut(s)	77
MwoI	GCNNNNNNNGC	4 cut(s)	68, 344, 419, 524
NciI	CCSGG	1 cut(s)	545
NdeII	GATC	1 cut(s)	371
NheI	GCTAGC	1 cut(s)	113
NlaIII	CATG	2 cut(s)	96, 133
NlaIV	GGNNCC	3 cut(s)	88, 230, 539
NmuCI	GTSAC	2 cut(s)	456, 550
PctI	GAATGC	1 cut(s)	609
PdmI	GAANNNNTTC	1 cut(s)	626
PfeI	GAWTC	1 cut(s)	464
PflMI	CCANNNNNTGG	1 cut(s)	341
PfoI	TCCNGGA	1 cut(s)	394
PkrI	GCNGC	6 cut(s)	152, 178, 185, 340, 542, 565
PleI	GAGTC	3 cut(s)	271, 463, 547
PpsI	GAGTC	3 cut(s)	271, 463, 547
PpuMI	RGGWCCY	1 cut(s)	365
Psp124BI	GAGCTC	1 cut(s)	520
Psp5II	RGGWCCY	1 cut(s)	365
Psp6I	CCWGG	6 cut(s)	51, 57, 313, 361, 394, 532
PspFI	CCCAGC	2 cut(s)	334, 433
PspGI	CCWGG	6 cut(s)	51, 57, 313, 361, 394, 532
PspN4I	GGNNCC	3 cut(s)	88, 230, 539
PspPI	GGNCC	3 cut(s)	49, 55, 365
PspPPI	RGGWCCY	1 cut(s)	365
PstNI	CAGNNNCTG	2 cut(s)	222, 341
PsuI	RGATCY	1 cut(s)	371
RsaI	GTAC	3 cut(s)	97, 163, 211
RsaNI	GTAC	3 cut(s)	96, 162, 210
SacI	GAGCTC	1 cut(s)	520
SaqAI	TTAA	1 cut(s)	485
SatI	GCNGC	6 cut(s)	151, 177, 184, 339, 541, 564
Sau3AI	GATC	1 cut(s)	371
Sau96I	GGNCC	3 cut(s)	49, 55, 365
ScaI	AGTACT	1 cut(s)	211
SchI	GAGTC	3 cut(s)	271, 464, 547
ScrFI	CCNGG	7 cut(s)	53, 59, 315, 363, 396, 534, 545
SduI	GDGCHC	3 cut(s)	349, 361, 520
SetI	ASST	9 cut(s)	119, 312, 352, 367, 403, 424, 446, 520, 619
SfaNI	GCATC	1 cut(s)	611
SfcI	CTRYAG	1 cut(s)	417
SinI	GGWCC	2 cut(s)	55, 365
Sse9I	AATT	1 cut(s)	187
SsiI	CCGC	5 cut(s)	75, 174, 339, 491, 541
SspMI	CTAG	7 cut(s)	29, 114, 213, 281, 369, 614, 631
SstI	GAGCTC	1 cut(s)	520
StyD4I	CCNGG	7 cut(s)	51, 57, 313, 361, 394, 532, 543
TaaI	ACNGT	1 cut(s)	224
TasI	AATT	1 cut(s)	187
TatI	WGTACW	2 cut(s)	95, 209
TauI	GCSGC	2 cut(s)	341, 543
TfiI	GAWTC	1 cut(s)	464
Tru1I	TTAA	1 cut(s)	485
Tru9I	TTAA	1 cut(s)	485
TscAI	CASTG	1 cut(s)	51
TseFI	GTSAC	2 cut(s)	456, 550
TseI	GCWGC	4 cut(s)	150, 176, 183, 563
Tsp45I	GTSAC	2 cut(s)	456, 550
TspRI	CASTG	1 cut(s)	51
Van91I	CCANNNNNTGG	1 cut(s)	341
VneI	GTGCAC	1 cut(s)	345
VpaK11BI	GGWCC	2 cut(s)	55, 365
XmnI	GAANNNNTTC	1 cut(s)	626
XspI	CTAG	7 cut(s)	29, 114, 213, 281, 369, 614, 631
ZrmI	AGTACT	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.