Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0009903

Physical Location & Seq

Genomic Coordinates Forward (+)

17497374 .. 17498648

Gene Structure 1275 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1196800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGAGATTTTCTTGCGGTTCCCCGGTCTAGTTATGGCAATGGCAGTGGCTCTGGTCCTGGCTCTCCCAGTCTCCGCCCAAGTCAGTTCCCCTTGCACCGCCAACATGATTTCTAGCTTGTCCCCTTGTATGAGTTATCTCACTAATAGCAGCGCCAATGGTACATCACCAACCGCAGCCTGCTGCAATTCGCTAAAATCCGTCACAAGTACTAGCAGGGACTGTGTGTGCCTCCTTGTGACTGGAAGCGTTCCCTTCCAGTTGCCAATCAACCGGACTCTAGCCCTCTCTCTTCCTCGTGCCTGCAACATCCCCGGTGTCCCTCTCCAATGCCGAGCCGCTGGTGCACCTAGTCCTGCTCCAGGCTCCCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

125

Amino Acids

12.63

Weight (kDa)

8.76

Isoelectric Point (pI)

67.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	13 - 111	2e-21	Probable lipid transfer
Tryp_alpha_amyl	PF00234	36 - 111	3.1e-09	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009903)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05450 AT3G22620
fragaria_vesca	FvH4_4g16090 FvH4_4g16090
malus_domestica	MD13G1196300.v1.1 MD16G1196800.v1.1
prunus_persica	Prupe.1G017000_v2.0.a1
pyrus_communis	pycom13g16840 pycom16g16560
rosa_chinensis	RchiOBHm_Chr4g0415631
rosa_laevigata	RLG00000008055
rosa_multiflora	Rmu_sc0001194.1_g000009 Rmu_sc0004599.1_g000011 Rmu_sc0038888.1_g000001
rosa_roxburghii	Rroxscaffold_5G00359450
rosa_rugosa	Rorug04G0136100
rosa_samantha	Rh4AG196600 Rh4BG195200 Rh4CG207400 Rh4DG194500
rosa_wichuraiana	Rw4G016720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	16, 75, 99, 174, 339
AfaI	GTAC	2 cut(s)	163, 211
AfiI	CCNNNNNNNGG	1 cut(s)	362
AjnI	CCWGG	2 cut(s)	57, 361
AluBI	AGCT	1 cut(s)	117
AluI	AGCT	1 cut(s)	117
Alw21I	GWGCWC	1 cut(s)	349
Alw26I	GTCTC	1 cut(s)	76
Alw44I	GTGCAC	1 cut(s)	345
AlwNI	CAGNNNCTG	1 cut(s)	222
ApaLI	GTGCAC	1 cut(s)	345
ApeKI	GCWGC	3 cut(s)	150, 176, 183
AspLEI	GCGC	1 cut(s)	155
AspS9I	GGNCC	1 cut(s)	55
AsuC2I	CCSGG	2 cut(s)	24, 315
AsuHPI	GGTGA	1 cut(s)	159
AvaII	GGWCC	1 cut(s)	55
BaeGI	GKGCMC	1 cut(s)	349
BauI	CACGAG	1 cut(s)	297
Bbv12I	GWGCWC	1 cut(s)	349
BbvI	GCAGC	3 cut(s)	162, 170, 188
BciT130I	CCWGG	2 cut(s)	59, 363
BcnI	CCSGG	2 cut(s)	24, 315
BcoDI	GTCTC	1 cut(s)	76
BfaI	CTAG	5 cut(s)	29, 114, 213, 281, 351
BfmI	CTRYAG	1 cut(s)	371
BfoI	RGCGCY	1 cut(s)	156
BisI	GCNGC	4 cut(s)	151, 177, 184, 339
BlsI	GCNGC	4 cut(s)	152, 178, 185, 340
BmcAI	AGTACT	1 cut(s)	211
Bme1390I	CCNGG	4 cut(s)	24, 59, 315, 363
Bme18I	GGWCC	1 cut(s)	55
BmgT120I	GGNCC	1 cut(s)	55
BmiI	GGNNCC	2 cut(s)	20, 367
BmrFI	CCNGG	4 cut(s)	24, 59, 315, 363
BmrI	ACTGGG	1 cut(s)	62
BmuI	ACTGGG	1 cut(s)	62
BpmI	CTGGAG	1 cut(s)	345
BpuMI	CCSGG	2 cut(s)	24, 315
BsaJI	CCNNGG	2 cut(s)	22, 313
BsaWI	WCCGGW	1 cut(s)	273
Bsc4I	CCNNNNNNNGG	1 cut(s)	362
Bse1I	ACTGG	3 cut(s)	68, 247, 259
Bse3DI	GCAATG	1 cut(s)	45
BseBI	CCWGG	2 cut(s)	59, 363
BseDI	CCNNGG	2 cut(s)	22, 313
BseGI	GGATG	1 cut(s)	309
BseLI	CCNNNNNNNGG	1 cut(s)	362
BseMI	GCAATG	1 cut(s)	45
BseNI	ACTGG	3 cut(s)	68, 247, 259
BseSI	GKGCMC	1 cut(s)	349
BseXI	GCAGC	3 cut(s)	162, 170, 188
BsiHKAI	GWGCWC	1 cut(s)	349
BsiSI	CCGG	3 cut(s)	24, 274, 315
BslFI	GGGAC	3 cut(s)	106, 233, 305
BslI	CCNNNNNNNGG	1 cut(s)	362
BsmAI	GTCTC	1 cut(s)	76
BsmFI	GGGAC	3 cut(s)	106, 233, 305
Bsp1286I	GDGCHC	1 cut(s)	349
BspACI	CCGC	5 cut(s)	16, 75, 99, 174, 339
BspLI	GGNNCC	2 cut(s)	20, 367
BsrDI	GCAATG	1 cut(s)	45
BsrI	ACTGG	3 cut(s)	68, 247, 259
BssECI	CCNNGG	2 cut(s)	22, 313
BssSI	CACGAG	1 cut(s)	297
Bst2BI	CACGAG	1 cut(s)	297
Bst2UI	CCWGG	2 cut(s)	59, 363
Bst4CI	ACNGT	1 cut(s)	224
Bst6I	CTCTTC	1 cut(s)	297
BstC8I	GCNNGC	2 cut(s)	181, 304
BstENI	CCTNNNNNAGG	1 cut(s)	360
BstF5I	GGATG	1 cut(s)	309
BstH2I	RGCGCY	1 cut(s)	156
BstHHI	GCGC	1 cut(s)	155
BstMAI	GTCTC	1 cut(s)	76
BstMWI	GCNNNNNNNGC	1 cut(s)	344
BstNI	CCWGG	2 cut(s)	59, 363
BstSCI	CCNGG	4 cut(s)	22, 57, 313, 361
BstSFI	CTRYAG	1 cut(s)	371
BstSLI	GKGCMC	1 cut(s)	349
BstV1I	GCAGC	3 cut(s)	162, 170, 188
BtsCI	GGATG	1 cut(s)	309
BtsI	GCAGTG	1 cut(s)	51
BtsIMutI	CAGTG	1 cut(s)	51
Cac8I	GCNNGC	2 cut(s)	181, 304
CaiI	CAGNNNCTG	1 cut(s)	222
CfoI	GCGC	1 cut(s)	155
Cfr13I	GGNCC	1 cut(s)	55
Csp6I	GTAC	2 cut(s)	162, 210
CspCI	CAANNNNNGTGG	2 cut(s)	27, 62
CviAII	CATG	1 cut(s)	106
CviJI	RGCY	7 cut(s)	50, 62, 117, 179, 284, 338, 366
CviKI_1	RGCY	7 cut(s)	50, 62, 117, 179, 284, 338, 366
CviQI	GTAC	2 cut(s)	162, 210
Eam1104I	CTCTTC	1 cut(s)	297
EarI	CTCTTC	1 cut(s)	297
EciI	GGCGGA	1 cut(s)	64
Eco47I	GGWCC	1 cut(s)	55
EcoNI	CCTNNNNNAGG	1 cut(s)	360
EcoRII	CCWGG	2 cut(s)	57, 361
FaeI	CATG	1 cut(s)	109
FaiI	YATR	3 cut(s)	35, 107, 131
FaqI	GGGAC	3 cut(s)	106, 233, 305
FatI	CATG	1 cut(s)	105
Fnu4HI	GCNGC	4 cut(s)	151, 177, 184, 339
FokI	GGATG	1 cut(s)	296
Fsp4HI	GCNGC	4 cut(s)	151, 177, 184, 339
FspBI	CTAG	5 cut(s)	29, 114, 213, 281, 351
GlaI	GCGC	1 cut(s)	154
GluI	GCNGC	4 cut(s)	151, 177, 184, 339
GsuI	CTGGAG	1 cut(s)	345
HaeII	RGCGCY	1 cut(s)	156
HapII	CCGG	3 cut(s)	24, 274, 315
HhaI	GCGC	1 cut(s)	155
Hin1II	CATG	1 cut(s)	109
Hin6I	GCGC	1 cut(s)	153
HinP1I	GCGC	1 cut(s)	153
HinfI	GANTC	1 cut(s)	277
HpaII	CCGG	3 cut(s)	24, 274, 315
HphI	GGTGA	1 cut(s)	159
Hpy166II	GTNNAC	1 cut(s)	347
Hpy8I	GTNNAC	1 cut(s)	347
HpyAV	CCTTC	1 cut(s)	265
HpyCH4III	ACNGT	1 cut(s)	224
HpyCH4V	TGCA	4 cut(s)	96, 186, 306, 347
HpyF10VI	GCNNNNNNNGC	1 cut(s)	344
Hsp92II	CATG	1 cut(s)	109
HspAI	GCGC	1 cut(s)	153
LmnI	GCTCC	2 cut(s)	364, 371
Lsp1109I	GCAGC	3 cut(s)	162, 170, 188
MaeI	CTAG	5 cut(s)	29, 114, 213, 281, 351
MaeIII	GTNAC	2 cut(s)	202, 238
MboII	GAAGA	1 cut(s)	284
MhlI	GDGCHC	1 cut(s)	349
MluCI	AATT	1 cut(s)	187
MlyI	GAGTC	1 cut(s)	271
MnlI	CCTC	4 cut(s)	242, 296, 306, 333
MspA1I	CMGCKG	1 cut(s)	341
MspI	CCGG	3 cut(s)	24, 274, 315
MspR9I	CCNGG	4 cut(s)	24, 59, 315, 363
MvaI	CCWGG	2 cut(s)	59, 363
MwoI	GCNNNNNNNGC	1 cut(s)	344
NciI	CCSGG	2 cut(s)	24, 315
NlaIII	CATG	1 cut(s)	109
NlaIV	GGNNCC	2 cut(s)	20, 367
NmeAIII	GCCGAG	1 cut(s)	359
NmuCI	GTSAC	2 cut(s)	202, 238
PkrI	GCNGC	4 cut(s)	152, 178, 185, 340
PleI	GAGTC	1 cut(s)	271
PpsI	GAGTC	1 cut(s)	271
Psp6I	CCWGG	2 cut(s)	57, 361
PspGI	CCWGG	2 cut(s)	57, 361
PspN4I	GGNNCC	2 cut(s)	20, 367
PspPI	GGNCC	1 cut(s)	55
PstNI	CAGNNNCTG	1 cut(s)	222
RsaI	GTAC	2 cut(s)	163, 211
RsaNI	GTAC	2 cut(s)	162, 210
SatI	GCNGC	4 cut(s)	151, 177, 184, 339
Sau96I	GGNCC	1 cut(s)	55
ScaI	AGTACT	1 cut(s)	211
SchI	GAGTC	1 cut(s)	271
ScrFI	CCNGG	4 cut(s)	24, 59, 315, 363
SduI	GDGCHC	1 cut(s)	349
SetI	ASST	2 cut(s)	119, 352
SfcI	CTRYAG	1 cut(s)	371
SinI	GGWCC	1 cut(s)	55
Sse9I	AATT	1 cut(s)	187
SsiI	CCGC	5 cut(s)	16, 75, 99, 174, 339
SspMI	CTAG	5 cut(s)	29, 114, 213, 281, 351
StyD4I	CCNGG	4 cut(s)	22, 57, 313, 361
TaaI	ACNGT	1 cut(s)	224
TasI	AATT	1 cut(s)	187
TatI	WGTACW	1 cut(s)	209
TauI	GCSGC	1 cut(s)	341
TscAI	CASTG	1 cut(s)	51
TseFI	GTSAC	2 cut(s)	202, 238
TseI	GCWGC	3 cut(s)	150, 176, 183
Tsp45I	GTSAC	2 cut(s)	202, 238
TspGWI	ACGGA	1 cut(s)	190
TspRI	CASTG	1 cut(s)	51
VneI	GTGCAC	1 cut(s)	345
VpaK11BI	GGWCC	1 cut(s)	55
XagI	CCTNNNNNAGG	1 cut(s)	360
XspI	CTAG	5 cut(s)	29, 114, 213, 281, 351
ZrmI	AGTACT	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.