Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0009903

Physical Location & Seq

Genomic Coordinates Reverse (-)

38063749 .. 38064774

Gene Structure 1026 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG194500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGCGATTTCAGTGCCTTCTTCCTGTCTGGTACTCATGGTCTTGGTAATGGCTGCTGTCTCGGTTATGCCAGTTGTCTATGGCCAAGTTGGTACCCCTTGCTCTACTGCTACAATTGCGAGCTTCAGCCCCTGCATGAACTTTCTCACTAACAGTACCGCCAACGGTACTGCACCAACCGCAGACTGTTGCAATTCGCTTAAGAATCTCACAGGTACCAGCAGGGACTGTATGTGCCTCCTTGTAACTGGAAATGTTCCCGTTCAACTACCAATCAACCGTACTCTCGCCATCTCTCTTCCACGTGCTTGCAACACCCCTGGCGTCCCACTCCAATGCAAAGCCACTGGTACACCTCTTCCTGCTCCAGGTCCTAACTCTCAAGTACCAACTTCTTCTCCTGGAGCTTCACCATCTGCCAGTCCAACAGCTTCTACTGTCCCTGAACCCACCTCATCTGCTGAATCACCAGAATCAGACACCCCACCATCATCAACTGGCGGCTCCGGAGCTCCAACAGCTACTACTGGGAGCCGCCCAGCTCTGACTCCATCGGCTGCCATGCCTTCTTACTCTCTGTCGCCTTCTCTTCTGCTATTTGCTTCAGCAGTTCTGGTGTTGAAGTTTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

210

Amino Acids

20.93

Weight (kDa)

7.45

Isoelectric Point (pI)

59.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	16 - 113	2.2e-19	Probable lipid transfer
Tryp_alpha_amyl	PF00234	39 - 113	2e-08	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009903)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05450 AT3G22620
fragaria_vesca	FvH4_4g16090 FvH4_4g16090
malus_domestica	MD13G1196300.v1.1 MD16G1196800.v1.1
prunus_persica	Prupe.1G017000_v2.0.a1
pyrus_communis	pycom13g16840 pycom16g16560
rosa_chinensis	RchiOBHm_Chr4g0415631
rosa_laevigata	RLG00000008055
rosa_multiflora	Rmu_sc0001194.1_g000009 Rmu_sc0004599.1_g000011 Rmu_sc0038888.1_g000001
rosa_roxburghii	Rroxscaffold_5G00359450
rosa_rugosa	Rorug04G0136100
rosa_samantha	Rh4AG196600 Rh4BG195200 Rh4CG207400 Rh4DG194500
rosa_wichuraiana	Rw4G016720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	92, 215
AccB1I	GGYRCC	2 cut(s)	92, 215
AccIII	TCCGGA	1 cut(s)	506
AciI	CCGC	4 cut(s)	159, 180, 501, 535
AcoI	YGGCCR	1 cut(s)	82
AcuI	CTGAAG	2 cut(s)	109, 588
AcvI	CACGTG	1 cut(s)	305
AcyI	GRCGYC	1 cut(s)	324
AfaI	GTAC	8 cut(s)	33, 94, 157, 169, 217, 283, 352, 387
AfiI	CCNNNNNNNGG	1 cut(s)	368
AflII	CTTAAG	1 cut(s)	200
AgsI	TTSAA	2 cut(s)	266, 622
AjnI	CCWGG	3 cut(s)	319, 367, 400
AluBI	AGCT	6 cut(s)	123, 407, 431, 512, 521, 542
AluI	AGCT	6 cut(s)	123, 407, 431, 512, 521, 542
Alw21I	GWGCWC	1 cut(s)	514
Alw26I	GTCTC	1 cut(s)	64
AlwNI	CAGNNNCTG	2 cut(s)	132, 228
Aor13HI	TCCGGA	1 cut(s)	506
AoxI	GGCC	1 cut(s)	82
ApeKI	GCWGC	2 cut(s)	53, 557
Asp718I	GGTACC	2 cut(s)	92, 215
AspS9I	GGNCC	1 cut(s)	371
AsuHPI	GGTGA	2 cut(s)	402, 459
AvaII	GGWCC	1 cut(s)	371
BalI	TGGCCA	1 cut(s)	84
BanI	GGYRCC	2 cut(s)	92, 215
BanII	GRGCYC	1 cut(s)	514
BbrPI	CACGTG	1 cut(s)	305
Bbv12I	GWGCWC	1 cut(s)	514
BbvI	GCAGC	2 cut(s)	40, 544
BccI	CCATC	4 cut(s)	299, 421, 496, 559
BcgI	CGANNNNNNTGC	1 cut(s)	29
BciT130I	CCWGG	3 cut(s)	321, 369, 402
BcoDI	GTCTC	1 cut(s)	64
BfaI	CTAG	1 cut(s)	631
BfrI	CTTAAG	1 cut(s)	200
BisI	GCNGC	4 cut(s)	54, 502, 535, 558
BlsI	GCNGC	4 cut(s)	55, 503, 536, 559
Bme1390I	CCNGG	3 cut(s)	321, 369, 402
Bme18I	GGWCC	1 cut(s)	371
BmgT120I	GGNCC	1 cut(s)	371
BmiI	GGNNCC	4 cut(s)	94, 217, 505, 533
BmrFI	CCNGG	3 cut(s)	321, 369, 402
BmrI	ACTGGG	1 cut(s)	537
BmuI	ACTGGG	1 cut(s)	537
BpmI	CTGGAG	2 cut(s)	351, 423
BpuEI	CTTGAG	1 cut(s)	366
BsaAI	YACGTR	1 cut(s)	305
BsaHI	GRCGYC	1 cut(s)	324
BsaJI	CCNNGG	1 cut(s)	319
BsaWI	WCCGGW	1 cut(s)	506
BsaXI	ACNNNNNCTCC	2 cut(s)	382, 412
Bsc4I	CCNNNNNNNGG	1 cut(s)	368
Bse1I	ACTGG	6 cut(s)	71, 253, 352, 420, 502, 532
BseAI	TCCGGA	1 cut(s)	506
BseBI	CCWGG	3 cut(s)	321, 369, 402
BseDI	CCNNGG	1 cut(s)	319
BseLI	CCNNNNNNNGG	1 cut(s)	368
BseNI	ACTGG	6 cut(s)	71, 253, 352, 420, 502, 532
BseXI	GCAGC	2 cut(s)	40, 544
BseYI	CCCAGC	1 cut(s)	538
BsgI	GTGCAG	1 cut(s)	156
BshFI	GGCC	1 cut(s)	84
BshNI	GGYRCC	2 cut(s)	92, 215
BsiHKAI	GWGCWC	1 cut(s)	514
BsiSI	CCGG	1 cut(s)	507
BslFI	GGGAC	3 cut(s)	239, 311, 425
BslI	CCNNNNNNNGG	1 cut(s)	368
BsmAI	GTCTC	1 cut(s)	64
BsmFI	GGGAC	3 cut(s)	239, 311, 425
BsnI	GGCC	1 cut(s)	84
Bsp1286I	GDGCHC	1 cut(s)	514
Bsp13I	TCCGGA	1 cut(s)	506
BspACI	CCGC	4 cut(s)	159, 180, 501, 535
BspANI	GGCC	1 cut(s)	84
BspEI	TCCGGA	1 cut(s)	506
BspLI	GGNNCC	4 cut(s)	94, 217, 505, 533
BspT107I	GGYRCC	2 cut(s)	92, 215
BspTI	CTTAAG	1 cut(s)	200
BsrI	ACTGG	6 cut(s)	71, 253, 352, 420, 502, 532
BssECI	CCNNGG	1 cut(s)	319
BssNI	GRCGYC	1 cut(s)	324
Bst2UI	CCWGG	3 cut(s)	321, 369, 402
Bst4CI	ACNGT	6 cut(s)	155, 167, 188, 230, 281, 439
Bst6I	CTCTTC	3 cut(s)	303, 363, 594
BstACI	GRCGYC	1 cut(s)	324
BstAFI	CTTAAG	1 cut(s)	200
BstBAI	YACGTR	1 cut(s)	305
BstC8I	GCNNGC	2 cut(s)	121, 310
BstENI	CCTNNNNNAGG	1 cut(s)	366
BstMAI	GTCTC	1 cut(s)	64
BstMWI	GCNNNNNNNGC	3 cut(s)	116, 179, 518
BstNI	CCWGG	3 cut(s)	321, 369, 402
BstSCI	CCNGG	3 cut(s)	319, 367, 400
BstV1I	GCAGC	2 cut(s)	40, 544
BsuRI	GGCC	1 cut(s)	84
BtsIMutI	CAGTG	2 cut(s)	18, 345
Cac8I	GCNNGC	2 cut(s)	121, 310
CaiI	CAGNNNCTG	2 cut(s)	132, 228
Cfr13I	GGNCC	1 cut(s)	371
CseI	GACGC	1 cut(s)	313
Csp6I	GTAC	8 cut(s)	32, 93, 156, 168, 216, 282, 351, 386
CviAII	CATG	3 cut(s)	37, 136, 562
CviQI	GTAC	8 cut(s)	32, 93, 156, 168, 216, 282, 351, 386
EaeI	YGGCCR	1 cut(s)	82
Eam1104I	CTCTTC	3 cut(s)	303, 363, 594
EarI	CTCTTC	3 cut(s)	303, 363, 594
Ecl136II	GAGCTC	1 cut(s)	512
Eco24I	GRGCYC	1 cut(s)	514
Eco47I	GGWCC	1 cut(s)	371
Eco53kI	GAGCTC	1 cut(s)	512
Eco57I	CTGAAG	2 cut(s)	109, 588
Eco72I	CACGTG	1 cut(s)	305
EcoICRI	GAGCTC	1 cut(s)	512
EcoNI	CCTNNNNNAGG	1 cut(s)	366
EcoO109I	RGGNCCY	1 cut(s)	371
EcoRII	CCWGG	3 cut(s)	319, 367, 400
EcoT38I	GRGCYC	1 cut(s)	514
FaeI	CATG	3 cut(s)	40, 139, 565
FaiI	YATR	6 cut(s)	38, 68, 81, 137, 233, 563
FaqI	GGGAC	3 cut(s)	239, 311, 425
FatI	CATG	3 cut(s)	36, 135, 561
Fnu4HI	GCNGC	4 cut(s)	54, 502, 535, 558
FriOI	GRGCYC	1 cut(s)	514
Fsp4HI	GCNGC	4 cut(s)	54, 502, 535, 558
FspBI	CTAG	1 cut(s)	631
GluI	GCNGC	4 cut(s)	54, 502, 535, 558
GsaI	CCCAGC	1 cut(s)	542
GsuI	CTGGAG	2 cut(s)	351, 423
HaeIII	GGCC	1 cut(s)	84
HapII	CCGG	1 cut(s)	507
HgaI	GACGC	1 cut(s)	313
Hin1I	GRCGYC	1 cut(s)	324
Hin1II	CATG	3 cut(s)	40, 139, 565
HinfI	GANTC	4 cut(s)	205, 464, 473, 547
HpaII	CCGG	1 cut(s)	507
HphI	GGTGA	2 cut(s)	402, 459
Hpy166II	GTNNAC	1 cut(s)	353
Hpy188I	TCNGA	2 cut(s)	478, 546
Hpy188III	TCNNGA	1 cut(s)	507
Hpy8I	GTNNAC	1 cut(s)	353
HpyAV	CCTTC	3 cut(s)	27, 576, 594
HpyCH4III	ACNGT	6 cut(s)	155, 167, 188, 230, 281, 439
HpyCH4IV	ACGT	1 cut(s)	304
HpyCH4V	TGCA	5 cut(s)	135, 173, 192, 312, 339
HpyF10VI	GCNNNNNNNGC	3 cut(s)	116, 179, 518
HpySE526I	ACGT	1 cut(s)	304
Hsp92I	GRCGYC	1 cut(s)	324
Hsp92II	CATG	3 cut(s)	40, 139, 565
Kpn2I	TCCGGA	1 cut(s)	506
KpnI	GGTACC	2 cut(s)	96, 219
LmnI	GCTCC	6 cut(s)	370, 404, 509, 509, 517, 531
Lsp1109I	GCAGC	2 cut(s)	40, 544
MaeI	CTAG	1 cut(s)	631
MaeII	ACGT	1 cut(s)	304
MaeIII	GTNAC	1 cut(s)	244
MboII	GAAGA	5 cut(s)	12, 290, 350, 387, 581
MfeI	CAATTG	1 cut(s)	114
MhlI	GDGCHC	1 cut(s)	514
MlsI	TGGCCA	1 cut(s)	84
MluCI	AATT	2 cut(s)	114, 193
MluNI	TGGCCA	1 cut(s)	84
MlyI	GAGTC	1 cut(s)	541
MmeI	TCCRAC	2 cut(s)	449, 539
MnlI	CCTC	3 cut(s)	248, 366, 463
Mox20I	TGGCCA	1 cut(s)	84
MroI	TCCGGA	1 cut(s)	506
MscI	TGGCCA	1 cut(s)	84
MseI	TTAA	1 cut(s)	201
MslI	CAYNNNNRTG	1 cut(s)	334
Msp20I	TGGCCA	1 cut(s)	84
MspCI	CTTAAG	1 cut(s)	200
MspI	CCGG	1 cut(s)	507
MspR9I	CCNGG	3 cut(s)	321, 369, 402
MunI	CAATTG	1 cut(s)	114
MvaI	CCWGG	3 cut(s)	321, 369, 402
MwoI	GCNNNNNNNGC	3 cut(s)	116, 179, 518
NlaIII	CATG	3 cut(s)	40, 139, 565
NlaIV	GGNNCC	4 cut(s)	94, 217, 505, 533
PfeI	GAWTC	3 cut(s)	205, 464, 473
PfoI	TCCNGGA	1 cut(s)	400
PkrI	GCNGC	4 cut(s)	55, 503, 536, 559
PleI	GAGTC	1 cut(s)	541
PmaCI	CACGTG	1 cut(s)	305
PmlI	CACGTG	1 cut(s)	305
PpsI	GAGTC	1 cut(s)	541
Ppu21I	YACGTR	1 cut(s)	305
PpuMI	RGGWCCY	1 cut(s)	371
Psp124BI	GAGCTC	1 cut(s)	514
Psp5II	RGGWCCY	1 cut(s)	371
Psp6I	CCWGG	3 cut(s)	319, 367, 400
PspCI	CACGTG	1 cut(s)	305
PspFI	CCCAGC	1 cut(s)	538
PspGI	CCWGG	3 cut(s)	319, 367, 400
PspN4I	GGNNCC	4 cut(s)	94, 217, 505, 533
PspPI	GGNCC	1 cut(s)	371
PspPPI	RGGWCCY	1 cut(s)	371
PstNI	CAGNNNCTG	2 cut(s)	132, 228
RsaI	GTAC	8 cut(s)	33, 94, 157, 169, 217, 283, 352, 387
RsaNI	GTAC	8 cut(s)	32, 93, 156, 168, 216, 282, 351, 386
RseI	CAYNNNNRTG	1 cut(s)	334
SacI	GAGCTC	1 cut(s)	514
SaqAI	TTAA	1 cut(s)	201
SatI	GCNGC	4 cut(s)	54, 502, 535, 558
Sau96I	GGNCC	1 cut(s)	371
SchI	GAGTC	1 cut(s)	541
ScrFI	CCNGG	3 cut(s)	321, 369, 402
SduI	GDGCHC	1 cut(s)	514
SinI	GGWCC	1 cut(s)	371
SmiMI	CAYNNNNRTG	1 cut(s)	334
SmlI	CTYRAG	2 cut(s)	200, 381
SmoI	CTYRAG	2 cut(s)	200, 381
Sse9I	AATT	2 cut(s)	114, 193
SsiI	CCGC	4 cut(s)	159, 180, 501, 535
SspMI	CTAG	1 cut(s)	631
SstI	GAGCTC	1 cut(s)	514
StyD4I	CCNGG	3 cut(s)	319, 367, 400
TaaI	ACNGT	6 cut(s)	155, 167, 188, 230, 281, 439
TaiI	ACGT	1 cut(s)	307
TasI	AATT	2 cut(s)	114, 193
TauI	GCSGC	2 cut(s)	504, 537
TfiI	GAWTC	3 cut(s)	205, 464, 473
Tru1I	TTAA	1 cut(s)	201
Tru9I	TTAA	1 cut(s)	201
TscAI	CASTG	2 cut(s)	18, 352
TseI	GCWGC	2 cut(s)	53, 557
TspDTI	ATGAA	1 cut(s)	152
TspRI	CASTG	2 cut(s)	18, 352
Vha464I	CTTAAG	1 cut(s)	200
VpaK11BI	GGWCC	1 cut(s)	371
XagI	CCTNNNNNAGG	1 cut(s)	366
XspI	CTAG	1 cut(s)	631

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.