Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0014718

Physical Location & Seq

Genomic Coordinates Reverse (-)

23570212 .. 23572235

Gene Structure 2024 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g20230.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGGATGGTAGCCAAGAGCTGAGAAACAACAACACCACCACCGATCTTCCTCCTCCTTCTTCTTCCTCGATGGCCAACTCAACCCTTTTCTCCGATCACGAGATTCCGATGATTCCCAACACCACCTTCTCCTCACTCTCCGGCTTCTTCGACTCCGAAGCTGAAAGGGGCTCCTTCCTCGACCTGCTCGGCAACTCGGAGTACGCTTCTCTCTTCGATTTCGGGACCCAAACGACGCCGTCTGACTCGATGACGATGATGATGATGCCACCTCAGCAGCAGAGAGTAGCACAACCGTCGCCGGTGTCGTCTACGGTGCCGGAGAGTGGGACTAACTCTGAGGCTTTGAACTCCGGCGCCACTACTACTGCTCCTACGACGCCCAACTCGTCTTCGATCTCGTCGTCTTCGAATGAAGCTCATGCGGCGAATAATAATGAGGAGCAAACAACGACGAAAACAGTGGAGGAGGATGAGGATGCTGACCAAGATCCCGACAAGACCCAGAAACAATTGAAACCGAAGAAGAAGAACCAGAAGAGGCAGAGGGAGCCGAGATTTGCGTTCATGACGAAGAGCGAGGTCGATAACCTAGACGACGGGTACAGATGGCGCAAGTACGGCCAAAAAGCTGTCAAGAACAGCCCTTATCCAAGGAGCTACTATCGTTGCACCACAGCTGGTTGCGGTGTGAAGAAGAGGGTCGAGAGGTCCTCCGACGACCCTTCCATTGTTGTGACGACTTACGAAGGCCAGCACACGCACCCGAGCCCGATCACTCCTCGCGGCAGCATGGGGATGGCGCCGCTGCCTTCGGAGCTGTCCGGTCATGTGTTCTCTGGGGCTGGTTATGGTGTAGTTCCTCATCATTATCAGCAGCAGCAGCAACAACAGCAGCAGCATTTGCACTCTTACATATATAACTCTTCGCCTTCTTTGAACGTTACTACCACCACCTCGTCAGCGCCATCCTATGGCTTCAACCCGGCTTCGTTTCCTGGTTTGTTTCAAGAGAGATATGGTAACATTGGTGGTCATAATTCCTCTAATTCGGCTGCTTCTAATTTGCTTAGAGATCATGGACTTCTTCAGGATATGCTGCCATCGCAGATTCGAAAGGAGACTAAGGAAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

379

Amino Acids

41.49

Weight (kDa)

5.68

Isoelectric Point (pI)

58.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	199 - 256	2e-28	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014718)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g20230
malus_domestica	MD13G1150700.v1.1 MD16G1151000.v1.1
prunus_persica	Prupe.1G114800_v2.0.a1
pyrus_communis	pycom13g12950 pycom16g12920
rosa_chinensis	RchiOBHm_Chr4g0425801
rosa_laevigata	RLG00000007339
rosa_multiflora	Rmu_sc0007063.1_g000001
rosa_roxburghii	Rroxscaffold_5G00367790
rosa_rugosa	Rorug04G0206200 Rorug04G0206300
rosa_samantha	Rh4AG263500 Rh4BG269400 Rh4CG281800 Rh4DG265800
rosa_wichuraiana	Rw4G022740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	192
AccB1I	GGYRCC	3 cut(s)	316, 356, 802
AccB7I	CCANNNNNTGG	1 cut(s)	974
AccI	GTMKAC	1 cut(s)	311
AccII	CGCG	1 cut(s)	786
AciI	CCGC	4 cut(s)	425, 687, 786, 806
AclI	AACGTT	1 cut(s)	942
AclWI	GGATC	1 cut(s)	485
AcoI	YGGCCR	2 cut(s)	72, 622
AcuI	CTGAAG	1 cut(s)	1073
AcyI	GRCGYC	4 cut(s)	236, 357, 380, 803
AfaI	GTAC	3 cut(s)	203, 605, 620
AfiI	CCNNNNNNNGG	2 cut(s)	326, 974
AgsI	TTSAA	5 cut(s)	349, 517, 940, 982, 1010
AjnI	CCWGG	1 cut(s)	997
AjuI	GAANNNNNNNTTGG	2 cut(s)	110, 142
AluBI	AGCT	7 cut(s)	19, 161, 419, 632, 660, 680, 820
AluI	AGCT	7 cut(s)	19, 161, 419, 632, 660, 680, 820
Alw26I	GTCTC	1 cut(s)	1115
AlwI	GGATC	1 cut(s)	485
Ama87I	CYCGRG	1 cut(s)	766
AoxI	GGCC	3 cut(s)	72, 622, 751
AspLEI	GCGC	4 cut(s)	359, 615, 805, 967
AspS9I	GGNCC	2 cut(s)	225, 711
AsuC2I	CCSGG	1 cut(s)	986
AsuII	TTCGAA	2 cut(s)	410, 1114
AvaI	CYCGRG	1 cut(s)	766
AvaII	GGWCC	2 cut(s)	225, 711
BalI	TGGCCA	1 cut(s)	74
BanI	GGYRCC	3 cut(s)	316, 356, 802
BanII	GRGCYC	2 cut(s)	173, 773
BauI	CACGAG	1 cut(s)	98
BbsI	GAAGAC	2 cut(s)	384, 399
BbvCI	CCTCAGC	1 cut(s)	273
BccI	CCATC	5 cut(s)	64, 603, 793, 976, 1111
BceAI	ACGGC	2 cut(s)	223, 637
BcgI	CGANNNNNNTGC	2 cut(s)	279, 313
BciT130I	CCWGG	1 cut(s)	999
BcnI	CCSGG	1 cut(s)	986
BcoDI	GTCTC	1 cut(s)	1115
BfaI	CTAG	1 cut(s)	593
BfoI	RGCGCY	3 cut(s)	360, 806, 968
BfuAI	ACCTGC	1 cut(s)	192
Bme1390I	CCNGG	2 cut(s)	986, 999
Bme18I	GGWCC	2 cut(s)	225, 711
BmeT110I	CYCGRG	1 cut(s)	766
BmgT120I	GGNCC	2 cut(s)	225, 711
BmiI	GGNNCC	7 cut(s)	172, 226, 227, 318, 358, 552, 804
BmrFI	CCNGG	2 cut(s)	986, 999
BmsI	GCATC	2 cut(s)	255, 469
BpiI	GAAGAC	2 cut(s)	384, 399
BplI	GAGNNNNNCTC	2 cut(s)	698, 730
Bpu10I	CCTNAGC	1 cut(s)	273
Bpu14I	TTCGAA	2 cut(s)	410, 1114
BpuMI	CCSGG	1 cut(s)	986
BsaHI	GRCGYC	4 cut(s)	236, 357, 380, 803
BsaJI	CCNNGG	1 cut(s)	653
BsaWI	WCCGGW	1 cut(s)	824
BsaXI	ACNNNNNCTCC	2 cut(s)	355, 385
Bsc4I	CCNNNNNNNGG	2 cut(s)	326, 974
Bse118I	RCCGGY	1 cut(s)	301
BseBI	CCWGG	1 cut(s)	999
BseDI	CCNNGG	1 cut(s)	653
BseGI	GGATG	5 cut(s)	10, 478, 484, 804, 968
BseLI	CCNNNNNNNGG	2 cut(s)	326, 974
BseMII	CTCAG	3 cut(s)	11, 287, 330
BseRI	GAGGAG	5 cut(s)	42, 121, 455, 482, 771
Bsh1236I	CGCG	1 cut(s)	786
BshFI	GGCC	3 cut(s)	74, 624, 753
BshNI	GGYRCC	3 cut(s)	316, 356, 802
BsiHKCI	CYCGRG	1 cut(s)	766
BsiSI	CCGG	6 cut(s)	141, 302, 320, 354, 825, 986
BslFI	GGGAC	2 cut(s)	238, 343
BslI	CCNNNNNNNGG	2 cut(s)	326, 974
BsmAI	GTCTC	1 cut(s)	1115
BsmFI	GGGAC	2 cut(s)	238, 343
BsnI	GGCC	3 cut(s)	74, 624, 753
BsoBI	CYCGRG	1 cut(s)	766
Bsp119I	TTCGAA	2 cut(s)	410, 1114
Bsp1286I	GDGCHC	2 cut(s)	173, 773
Bsp143I	GATC	6 cut(s)	43, 94, 396, 490, 774, 1075
BspACI	CCGC	4 cut(s)	425, 687, 786, 806
BspANI	GGCC	3 cut(s)	74, 624, 753
BspCNI	CTCAG	3 cut(s)	12, 286, 331
BspFNI	CGCG	1 cut(s)	786
BspHI	TCATGA	1 cut(s)	567
BspLI	GGNNCC	7 cut(s)	172, 226, 227, 318, 358, 552, 804
BspMI	ACCTGC	1 cut(s)	192
BspPI	GGATC	1 cut(s)	485
BspQI	GCTCTTC	1 cut(s)	569
BspT104I	TTCGAA	2 cut(s)	410, 1114
BspT107I	GGYRCC	3 cut(s)	316, 356, 802
BsrFI	RCCGGY	1 cut(s)	301
BssAI	RCCGGY	1 cut(s)	301
BssECI	CCNNGG	1 cut(s)	653
BssMI	GATC	6 cut(s)	43, 94, 396, 490, 774, 1075
BssNI	GRCGYC	4 cut(s)	236, 357, 380, 803
BssSI	CACGAG	1 cut(s)	98
BssT1I	CCWWGG	1 cut(s)	653
Bst2BI	CACGAG	1 cut(s)	98
Bst2UI	CCWGG	1 cut(s)	999
Bst4CI	ACNGT	3 cut(s)	297, 316, 463
Bst6I	CTCTTC	6 cut(s)	218, 533, 569, 692, 931, 1125
BstACI	GRCGYC	4 cut(s)	236, 357, 380, 803
BstAPI	GCANNNNNTGC	1 cut(s)	904
BstBI	TTCGAA	2 cut(s)	410, 1114
BstC8I	GCNNGC	1 cut(s)	755
BstDEI	CTNAG	5 cut(s)	20, 273, 339, 1070, 1125
BstF5I	GGATG	5 cut(s)	10, 478, 484, 804, 968
BstFNI	CGCG	1 cut(s)	786
BstH2I	RGCGCY	3 cut(s)	360, 806, 968
BstHHI	GCGC	4 cut(s)	359, 615, 805, 967
BstKTI	GATC	6 cut(s)	46, 97, 399, 493, 777, 1078
BstMAI	GTCTC	1 cut(s)	1115
BstMBI	GATC	6 cut(s)	43, 94, 396, 490, 774, 1075
BstMWI	GCNNNNNNNGC	9 cut(s)	274, 425, 550, 621, 817, 883, 892, 904, 1105
BstNI	CCWGG	1 cut(s)	999
BstSCI	CCNGG	2 cut(s)	984, 997
BstUI	CGCG	1 cut(s)	786
BstV2I	GAAGAC	2 cut(s)	384, 399
BstX2I	RGATCY	1 cut(s)	490
BstYI	RGATCY	1 cut(s)	490
BsuRI	GGCC	3 cut(s)	74, 624, 753
BtgZI	GCGATG	1 cut(s)	1089
BtsCI	GGATG	5 cut(s)	10, 478, 484, 804, 968
BtsIMutI	CAGTG	1 cut(s)	468
BveI	ACCTGC	1 cut(s)	192
Cac8I	GCNNGC	1 cut(s)	755
CciI	TCATGA	1 cut(s)	567
CfoI	GCGC	4 cut(s)	359, 615, 805, 967
Cfr10I	RCCGGY	1 cut(s)	301
Cfr13I	GGNCC	2 cut(s)	225, 711
CseI	GACGC	2 cut(s)	244, 388
Csp6I	GTAC	3 cut(s)	202, 604, 619
CviAII	CATG	5 cut(s)	422, 568, 793, 830, 1079
CviQI	GTAC	3 cut(s)	202, 604, 619
DdeI	CTNAG	5 cut(s)	20, 273, 339, 1070, 1125
DinI	GGCGCC	2 cut(s)	358, 804
DpnI	GATC	6 cut(s)	45, 96, 398, 492, 776, 1077
DpnII	GATC	6 cut(s)	43, 94, 396, 490, 774, 1075
EaeI	YGGCCR	2 cut(s)	72, 622
Eam1104I	CTCTTC	6 cut(s)	218, 533, 569, 692, 931, 1125
EarI	CTCTTC	6 cut(s)	218, 533, 569, 692, 931, 1125
Eco130I	CCWWGG	1 cut(s)	653
Eco24I	GRGCYC	2 cut(s)	173, 773
Eco47I	GGWCC	2 cut(s)	225, 711
Eco57I	CTGAAG	1 cut(s)	1073
Eco88I	CYCGRG	1 cut(s)	766
EcoO109I	RGGNCCY	2 cut(s)	225, 711
EcoRII	CCWGG	1 cut(s)	997
EcoT14I	CCWWGG	1 cut(s)	653
EcoT38I	GRGCYC	2 cut(s)	173, 773
EgeI	GGCGCC	2 cut(s)	358, 804
EheI	GGCGCC	2 cut(s)	358, 804
ErhI	CCWWGG	1 cut(s)	653
FaeI	CATG	5 cut(s)	425, 571, 796, 833, 1082
FaqI	GGGAC	2 cut(s)	238, 343
FatI	CATG	5 cut(s)	421, 567, 792, 829, 1078
FblI	GTMKAC	1 cut(s)	311
FokI	GGATG	5 cut(s)	17, 485, 491, 811, 955
FriOI	GRGCYC	2 cut(s)	173, 773
FspBI	CTAG	1 cut(s)	593
GlaI	GCGC	4 cut(s)	358, 614, 804, 966
HaeII	RGCGCY	3 cut(s)	360, 806, 968
HaeIII	GGCC	3 cut(s)	74, 624, 753
HapII	CCGG	6 cut(s)	141, 302, 320, 354, 825, 986
HgaI	GACGC	2 cut(s)	244, 388
HhaI	GCGC	4 cut(s)	359, 615, 805, 967
Hin1I	GRCGYC	4 cut(s)	236, 357, 380, 803
Hin1II	CATG	5 cut(s)	425, 571, 796, 833, 1082
Hin6I	GCGC	4 cut(s)	357, 613, 803, 965
HinP1I	GCGC	4 cut(s)	357, 613, 803, 965
HinfI	GANTC	5 cut(s)	103, 112, 152, 245, 1111
HpaII	CCGG	6 cut(s)	141, 302, 320, 354, 825, 986
Hpy166II	GTNNAC	1 cut(s)	312
Hpy188I	TCNGA	8 cut(s)	94, 108, 157, 199, 244, 340, 718, 817
Hpy188III	TCNNGA	8 cut(s)	98, 223, 494, 568, 637, 706, 1010, 1091
Hpy8I	GTNNAC	1 cut(s)	312
Hpy99I	CGWCG	7 cut(s)	238, 301, 382, 406, 457, 602, 722
HpyAV	CCTTC	7 cut(s)	66, 136, 184, 735, 743, 822, 942
HpyCH4III	ACNGT	3 cut(s)	297, 316, 463
HpyCH4IV	ACGT	1 cut(s)	942
HpyCH4V	TGCA	2 cut(s)	672, 907
HpyF10VI	GCNNNNNNNGC	9 cut(s)	274, 425, 550, 621, 817, 883, 892, 904, 1105
HpyF3I	CTNAG	5 cut(s)	20, 273, 339, 1070, 1125
HpySE526I	ACGT	1 cut(s)	942
Hsp92I	GRCGYC	4 cut(s)	236, 357, 380, 803
Hsp92II	CATG	5 cut(s)	425, 571, 796, 833, 1082
HspAI	GCGC	4 cut(s)	357, 613, 803, 965
KasI	GGCGCC	2 cut(s)	356, 802
KflI	GGGWCCC	1 cut(s)	225
Kzo9I	GATC	6 cut(s)	43, 94, 396, 490, 774, 1075
LguI	GCTCTTC	1 cut(s)	569
LmnI	GCTCC	6 cut(s)	176, 376, 442, 550, 657, 817
LweI	GCATC	2 cut(s)	255, 469
MaeI	CTAG	1 cut(s)	593
MaeII	ACGT	1 cut(s)	942
MaeIII	GTNAC	3 cut(s)	736, 943, 1022
MalI	GATC	6 cut(s)	45, 96, 398, 492, 776, 1077
MboI	GATC	6 cut(s)	43, 94, 396, 490, 774, 1075
MfeI	CAATTG	1 cut(s)	512
MflI	RGATCY	1 cut(s)	490
MhlI	GDGCHC	2 cut(s)	173, 773
MlsI	TGGCCA	1 cut(s)	74
MluCI	AATT	4 cut(s)	512, 1039, 1048, 1063
MluNI	TGGCCA	1 cut(s)	74
Mly113I	GGCGCC	2 cut(s)	357, 803
MlyI	GAGTC	2 cut(s)	146, 239
MmeI	TCCRAC	1 cut(s)	741
Mox20I	TGGCCA	1 cut(s)	74
MscI	TGGCCA	1 cut(s)	74
MslI	CAYNNNNRTG	2 cut(s)	734, 797
Msp20I	TGGCCA	1 cut(s)	74
MspA1I	CMGCKG	2 cut(s)	680, 808
MspI	CCGG	6 cut(s)	141, 302, 320, 354, 825, 986
MspR9I	CCNGG	2 cut(s)	986, 999
MunI	CAATTG	1 cut(s)	512
MvaI	CCWGG	1 cut(s)	999
MvnI	CGCG	1 cut(s)	786
MwoI	GCNNNNNNNGC	9 cut(s)	274, 425, 550, 621, 817, 883, 892, 904, 1105
NarI	GGCGCC	2 cut(s)	357, 803
NciI	CCSGG	1 cut(s)	986
NdeII	GATC	6 cut(s)	43, 94, 396, 490, 774, 1075
NlaIII	CATG	5 cut(s)	425, 571, 796, 833, 1082
NlaIV	GGNNCC	7 cut(s)	172, 226, 227, 318, 358, 552, 804
NmeAIII	GCCGAG	2 cut(s)	168, 579
NmuCI	GTSAC	1 cut(s)	736
NspV	TTCGAA	2 cut(s)	410, 1114
PagI	TCATGA	1 cut(s)	567
PciSI	GCTCTTC	1 cut(s)	569
PcsI	WCGNNNNNNNCGW	4 cut(s)	305, 386, 401, 407
PfeI	GAWTC	3 cut(s)	103, 112, 1111
PflFI	GACNNNGTC	1 cut(s)	238
PflMI	CCANNNNNTGG	1 cut(s)	974
PleI	GAGTC	2 cut(s)	146, 239
PluTI	GGCGCC	2 cut(s)	360, 806
PpsI	GAGTC	2 cut(s)	146, 239
PpuMI	RGGWCCY	2 cut(s)	225, 711
Psp1406I	AACGTT	1 cut(s)	942
Psp5II	RGGWCCY	2 cut(s)	225, 711
Psp6I	CCWGG	1 cut(s)	997
PspGI	CCWGG	1 cut(s)	997
PspN4I	GGNNCC	7 cut(s)	172, 226, 227, 318, 358, 552, 804
PspPI	GGNCC	2 cut(s)	225, 711
PspPPI	RGGWCCY	2 cut(s)	225, 711
PsuI	RGATCY	1 cut(s)	490
PsyI	GACNNNGTC	1 cut(s)	238
PvuII	CAGCTG	1 cut(s)	680
RsaI	GTAC	3 cut(s)	203, 605, 620
RsaNI	GTAC	3 cut(s)	202, 604, 619
RseI	CAYNNNNRTG	2 cut(s)	734, 797
SapI	GCTCTTC	1 cut(s)	569
Sau3AI	GATC	6 cut(s)	43, 94, 396, 490, 774, 1075
Sau96I	GGNCC	2 cut(s)	225, 711
SchI	GAGTC	2 cut(s)	146, 239
ScrFI	CCNGG	2 cut(s)	986, 999
SduI	GDGCHC	2 cut(s)	173, 773
SfaNI	GCATC	2 cut(s)	255, 469
SfoI	GGCGCC	2 cut(s)	358, 804
SfuI	TTCGAA	2 cut(s)	410, 1114
SgrAI	CRCCGGYG	1 cut(s)	301
SinI	GGWCC	2 cut(s)	225, 711
SmiMI	CAYNNNNRTG	2 cut(s)	734, 797
Sse9I	AATT	4 cut(s)	512, 1039, 1048, 1063
SsiI	CCGC	4 cut(s)	425, 687, 786, 806
SspDI	GGCGCC	2 cut(s)	356, 802
SspMI	CTAG	1 cut(s)	593
StyD4I	CCNGG	2 cut(s)	984, 997
StyI	CCWWGG	1 cut(s)	653
TaaI	ACNGT	3 cut(s)	297, 316, 463
TaiI	ACGT	1 cut(s)	945
TasI	AATT	4 cut(s)	512, 1039, 1048, 1063
TauI	GCSGC	3 cut(s)	428, 789, 808
TfiI	GAWTC	3 cut(s)	103, 112, 1111
TscAI	CASTG	1 cut(s)	468
TseFI	GTSAC	1 cut(s)	736
Tsp45I	GTSAC	1 cut(s)	736
TspDTI	ATGAA	2 cut(s)	429, 556
TspRI	CASTG	1 cut(s)	468
Tth111I	GACNNNGTC	1 cut(s)	238
Van91I	CCANNNNNTGG	1 cut(s)	974
VpaK11BI	GGWCC	2 cut(s)	225, 711
XmiI	GTMKAC	1 cut(s)	311
XspI	CTAG	1 cut(s)	593

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.