Rh4BG269400
WRKY Family

WRKY transcription factor

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
Physical Location & Seq
Forward (+)
44357839 .. 44359351
1513 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG269400.1

Sequence Viewer

Length: 1173 bp
ATGGATGGTAGACAAGAGCTGAGAAACAACACCACCACCACCACCGATCGTACTACTCTTCCTCCTTCCTCCTCCTCTGCACCGATGGCCAACTCAGCACTTTTCTCCGATCACGAGATTCCGATGATACCCAACAACACCTTCCCTTCACTCTCAAGCATCTTCGACTCAGAACCCGAAAGGGGTTATCTGGGTTTCATGGAGTTGCTCGGCAACACGGACTACGCTCATGTGGTTGATTTCGGGACCCAAACGACGCCGTCTGACTCGTTGGTGACGATGATGATGCCACCTCAGCAGCAGCAGCAGCAGCAAACACAAGCGCTTCCTTCGCCGGTGTCGTCTACAGTGCCAGAGAGTGGGACTAACTCCGAGGCCTTGAACTCCAGCGCCAATACTGCTCCCACGACACCCAACTCGTCTTCGATCTCGTCCTCGTCTAATGAAGCTCATGCGGCGAATAATAATAATGAGGAGCAAACCACGACAAAAGCAGGAGATGAGGAAGAAGATGCTGACCAAGATCCGGACAAGACCCAGAAACAATTGAAACCCAAAAAGAAGAACCAGAAAAGGCAGAGGGAGCCGAGATTTGCGTTCATGACCAAGAGCGAGGTCGATAACCTAGACGACGGGTACAGATGGCGCAAGTACGGCCAAAAAGCTGTCAAGAACAGCCCTTATCCAAGGAGCTACTATCGTTGCACCACAGCAGGTTGCGGTGTGAAGAAGAGGGTGGAGAGGTCCTCCGACGACCCTTCGATTGTGGTGACGACTTACGAAGGCCAGCACACGCACCCGAGCCCGATCTCGCCGCGCGGCAGCATGGGGATGGCGCCGCTGCCGTCGGAGCTGTCCGGTCATTTGTTCACTGGGGCAGCAGGCTCAGGCTATGGTGTTCCTCATCACTATCAACATCAGCAGCAACAGCAACAGCATTTGCACTCTTATATATATAACTCTTCGCCTTCTTTGAACATTACTACTACCACCTCCTCAGCGCCATCCTATGGTTTCAACCCGGCGTCGTTTCCTGGTTTGTTTCAAGAGAGATATAATAACACTGGAGGAGGTCATTCCTCTAATTTGGTCGCTTCTAATTTGCTTAGAGACCACGGACTTCTTCAGGATATGCTGCCATCGCAGATTCGAAAAGAGACTAAGGAAGGGTAG

Protein Analysis

390

Amino Acids

42.76

Weight (kDa)

6.0

Isoelectric Point (pI)

58.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WRKY PF03106 210 - 267 2.1e-28 WRKY DNA -binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014718)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 704
AccB1I GGYRCC 1 cut(s) 835
AccB7I CCANNNNNTGG 2 cut(s) 359, 1010
AccI GTMKAC 2 cut(s) 10, 344
AccII CGCG 2 cut(s) 817, 819
AccIII TCCGGA 1 cut(s) 526
AciI CCGC 5 cut(s) 455, 720, 815, 819, 839
AclWI GGATC 1 cut(s) 518
AcoI YGGCCR 2 cut(s) 87, 655
AcuI CTGAAG 1 cut(s) 1109
AcyI GRCGYC 3 cut(s) 257, 836, 1025
AfaI GTAC 3 cut(s) 52, 638, 653
AfeI AGCGCT 1 cut(s) 324
AfiI CCNNNNNNNGG 4 cut(s) 182, 359, 526, 1010
AgsI TTSAA 5 cut(s) 382, 550, 976, 1018, 1046
AjnI CCWGG 1 cut(s) 1033
AjuI GAANNNNNNNTTGG 2 cut(s) 125, 157
AluBI AGCT 5 cut(s) 19, 449, 665, 693, 853
AluI AGCT 5 cut(s) 19, 449, 665, 693, 853
Alw26I GTCTC 2 cut(s) 1104, 1151
AlwI GGATC 1 cut(s) 518
Ama87I CYCGRG 1 cut(s) 799
Aor13HI TCCGGA 1 cut(s) 526
Aor51HI AGCGCT 1 cut(s) 324
AoxI GGCC 4 cut(s) 87, 375, 655, 784
AspLEI GCGC 6 cut(s) 325, 392, 648, 819, 838, 1003
AspS9I GGNCC 2 cut(s) 246, 744
AsuC2I CCSGG 1 cut(s) 1022
AsuHPI GGTGA 2 cut(s) 286, 781
AsuII TTCGAA 1 cut(s) 1150
AvaI CYCGRG 1 cut(s) 799
AvaII GGWCC 2 cut(s) 246, 744
BalI TGGCCA 1 cut(s) 89
BanI GGYRCC 1 cut(s) 835
BanII GRGCYC 1 cut(s) 806
BauI CACGAG 1 cut(s) 113
BbsI GAAGAC 1 cut(s) 414
BbvCI CCTCAGC 2 cut(s) 294, 997
BccI CCATC 5 cut(s) 79, 636, 826, 1012, 1147
BceAI ACGGC 3 cut(s) 244, 670, 829
BcgI CGANNNNNNTGC 2 cut(s) 268, 302
BciT130I CCWGG 1 cut(s) 1035
BcnI CCSGG 1 cut(s) 1022
BcoDI GTCTC 2 cut(s) 1104, 1151
BfaI CTAG 1 cut(s) 626
BfmI CTRYAG 1 cut(s) 345
BfoI RGCGCY 4 cut(s) 326, 393, 839, 1004
BfuAI ACCTGC 1 cut(s) 704
Bme1390I CCNGG 2 cut(s) 1022, 1035
Bme18I GGWCC 2 cut(s) 246, 744
BmeT110I CYCGRG 1 cut(s) 799
BmgT120I GGNCC 2 cut(s) 246, 744
BmiI GGNNCC 4 cut(s) 247, 248, 585, 837
BmrFI CCNGG 2 cut(s) 1022, 1035
BmrI ACTGGG 1 cut(s) 882
BmsI GCATC 3 cut(s) 168, 276, 502
BmuI ACTGGG 1 cut(s) 882
BpiI GAAGAC 1 cut(s) 414
BplI GAGNNNNNCTC 2 cut(s) 731, 763
BpmI CTGGAG 2 cut(s) 370, 1086
Bpu10I CCTNAGC 3 cut(s) 294, 886, 997
Bpu14I TTCGAA 1 cut(s) 1150
BpuEI CTTGAG 1 cut(s) 139
BpuMI CCSGG 1 cut(s) 1022
BsaHI GRCGYC 3 cut(s) 257, 836, 1025
BsaI GGTCTC 1 cut(s) 1104
BsaJI CCNNGG 3 cut(s) 372, 686, 1114
BsaWI WCCGGW 2 cut(s) 526, 857
BsaXI ACNNNNNCTCC 2 cut(s) 46, 76
Bsc4I CCNNNNNNNGG 4 cut(s) 182, 359, 526, 1010
Bse118I RCCGGY 1 cut(s) 334
Bse1I ACTGG 2 cut(s) 877, 1069
BseAI TCCGGA 1 cut(s) 526
BseBI CCWGG 1 cut(s) 1035
BseDI CCNNGG 3 cut(s) 372, 686, 1114
BseGI GGATG 3 cut(s) 10, 837, 1004
BseLI CCNNNNNNNGG 4 cut(s) 182, 359, 526, 1010
BseMII CTCAG 6 cut(s) 11, 108, 183, 308, 900, 1011
BseNI ACTGG 2 cut(s) 877, 1069
BseRI GAGGAG 5 cut(s) 61, 64, 488, 985, 1083
BsgI GTGCAG 1 cut(s) 63
Bsh1236I CGCG 2 cut(s) 817, 819
Bsh1285I CGRYCG 1 cut(s) 49
BshFI GGCC 4 cut(s) 89, 377, 657, 786
BshNI GGYRCC 1 cut(s) 835
BsiEI CGRYCG 1 cut(s) 49
BsiHKCI CYCGRG 1 cut(s) 799
BsiSI CCGG 4 cut(s) 335, 527, 858, 1022
BslFI GGGAC 2 cut(s) 259, 376
BslI CCNNNNNNNGG 4 cut(s) 182, 359, 526, 1010
BsmAI GTCTC 2 cut(s) 1104, 1151
BsmFI GGGAC 2 cut(s) 259, 376
BsnI GGCC 4 cut(s) 89, 377, 657, 786
Bso31I GGTCTC 1 cut(s) 1104
BsoBI CYCGRG 1 cut(s) 799
Bsp119I TTCGAA 1 cut(s) 1150
Bsp1286I GDGCHC 1 cut(s) 806
Bsp13I TCCGGA 1 cut(s) 526
Bsp143I GATC 5 cut(s) 46, 109, 426, 523, 807
BspACI CCGC 5 cut(s) 455, 720, 815, 819, 839
BspANI GGCC 4 cut(s) 89, 377, 657, 786
BspCNI CTCAG 6 cut(s) 12, 107, 182, 307, 899, 1010
BspEI TCCGGA 1 cut(s) 526
BspFNI CGCG 2 cut(s) 817, 819
BspHI TCATGA 1 cut(s) 600
BspLI GGNNCC 4 cut(s) 247, 248, 585, 837
BspMI ACCTGC 1 cut(s) 704
BspPI GGATC 1 cut(s) 518
BspT104I TTCGAA 1 cut(s) 1150
BspT107I GGYRCC 1 cut(s) 835
BspTNI GGTCTC 1 cut(s) 1104
BsrFI RCCGGY 1 cut(s) 334
BsrI ACTGG 2 cut(s) 877, 1069
BssAI RCCGGY 1 cut(s) 334
BssECI CCNNGG 3 cut(s) 372, 686, 1114
BssMI GATC 5 cut(s) 46, 109, 426, 523, 807
BssNI GRCGYC 3 cut(s) 257, 836, 1025
BssSI CACGAG 1 cut(s) 113
BssT1I CCWWGG 1 cut(s) 686
Bst2BI CACGAG 1 cut(s) 113
Bst2UI CCWGG 1 cut(s) 1035
Bst4CI ACNGT 1 cut(s) 349
Bst6I CTCTTC 3 cut(s) 63, 725, 967
BstACI GRCGYC 3 cut(s) 257, 836, 1025
BstBI TTCGAA 1 cut(s) 1150
BstC8I GCNNGC 2 cut(s) 788, 883
BstDEI CTNAG 8 cut(s) 20, 94, 169, 294, 886, 997, 1106, 1161
BstDSI CCRYGG 1 cut(s) 1114
BstF5I GGATG 3 cut(s) 10, 837, 1004
BstFNI CGCG 2 cut(s) 817, 819
BstH2I RGCGCY 4 cut(s) 326, 393, 839, 1004
BstHHI GCGC 6 cut(s) 325, 392, 648, 819, 838, 1003
BstKTI GATC 5 cut(s) 49, 112, 429, 526, 810
BstMAI GTCTC 2 cut(s) 1104, 1151
BstMBI GATC 5 cut(s) 46, 109, 426, 523, 807
BstMCI CGRYCG 1 cut(s) 49
BstNI CCWGG 1 cut(s) 1035
BstSCI CCNGG 2 cut(s) 1020, 1033
BstSFI CTRYAG 1 cut(s) 345
BstUI CGCG 2 cut(s) 817, 819
BstV2I GAAGAC 1 cut(s) 414
BstX2I RGATCY 1 cut(s) 523
BstYI RGATCY 1 cut(s) 523
BsuRI GGCC 4 cut(s) 89, 377, 657, 786
BtgI CCRYGG 1 cut(s) 1114
BtgZI GCGATG 1 cut(s) 1125
BtsCI GGATG 3 cut(s) 10, 837, 1004
BtsIMutI CAGTG 3 cut(s) 354, 870, 1062
BveI ACCTGC 1 cut(s) 704
Cac8I GCNNGC 2 cut(s) 788, 883
CciI TCATGA 1 cut(s) 600
CfoI GCGC 6 cut(s) 325, 392, 648, 819, 838, 1003
Cfr10I RCCGGY 1 cut(s) 334
Cfr13I GGNCC 2 cut(s) 246, 744
CseI GACGC 2 cut(s) 265, 1014
Csp6I GTAC 3 cut(s) 51, 637, 652
CviAII CATG 5 cut(s) 199, 230, 452, 601, 826
CviQI GTAC 3 cut(s) 51, 637, 652
DdeI CTNAG 8 cut(s) 20, 94, 169, 294, 886, 997, 1106, 1161
DinI GGCGCC 1 cut(s) 837
DpnI GATC 5 cut(s) 48, 111, 428, 525, 809
DpnII GATC 5 cut(s) 46, 109, 426, 523, 807
EaeI YGGCCR 2 cut(s) 87, 655
Eam1104I CTCTTC 3 cut(s) 63, 725, 967
EarI CTCTTC 3 cut(s) 63, 725, 967
Eco130I CCWWGG 1 cut(s) 686
Eco147I AGGCCT 1 cut(s) 377
Eco24I GRGCYC 1 cut(s) 806
Eco31I GGTCTC 1 cut(s) 1104
Eco47I GGWCC 2 cut(s) 246, 744
Eco47III AGCGCT 1 cut(s) 324
Eco57I CTGAAG 1 cut(s) 1109
Eco88I CYCGRG 1 cut(s) 799
EcoO109I RGGNCCY 2 cut(s) 246, 744
EcoRII CCWGG 1 cut(s) 1033
EcoT14I CCWWGG 1 cut(s) 686
EcoT38I GRGCYC 1 cut(s) 806
EgeI GGCGCC 1 cut(s) 837
EheI GGCGCC 1 cut(s) 837
ErhI CCWWGG 1 cut(s) 686
FaeI CATG 5 cut(s) 202, 233, 455, 604, 829
FaqI GGGAC 2 cut(s) 259, 376
FatI CATG 5 cut(s) 198, 229, 451, 600, 825
FblI GTMKAC 2 cut(s) 10, 344
FokI GGATG 3 cut(s) 17, 844, 991
FriOI GRGCYC 1 cut(s) 806
FspBI CTAG 1 cut(s) 626
GlaI GCGC 6 cut(s) 324, 391, 647, 818, 837, 1002
GsuI CTGGAG 2 cut(s) 370, 1086
HaeII RGCGCY 4 cut(s) 326, 393, 839, 1004
HaeIII GGCC 4 cut(s) 89, 377, 657, 786
HapII CCGG 4 cut(s) 335, 527, 858, 1022
HgaI GACGC 2 cut(s) 265, 1014
HhaI GCGC 6 cut(s) 325, 392, 648, 819, 838, 1003
Hin1I GRCGYC 3 cut(s) 257, 836, 1025
Hin1II CATG 5 cut(s) 202, 233, 455, 604, 829
Hin6I GCGC 6 cut(s) 323, 390, 646, 817, 836, 1001
HinP1I GCGC 6 cut(s) 323, 390, 646, 817, 836, 1001
HinfI GANTC 4 cut(s) 118, 167, 266, 1147
HpaII CCGG 4 cut(s) 335, 527, 858, 1022
HphI GGTGA 2 cut(s) 286, 781
Hpy166II GTNNAC 3 cut(s) 11, 345, 870
Hpy188I TCNGA 7 cut(s) 109, 123, 172, 265, 373, 751, 850
Hpy188III TCNNGA 7 cut(s) 113, 244, 527, 601, 670, 1046, 1127
Hpy8I GTNNAC 3 cut(s) 11, 345, 870
Hpy99I CGWCG 5 cut(s) 259, 635, 755, 850, 1030
HpyAV CCTTC 8 cut(s) 75, 151, 156, 339, 768, 776, 978, 1160
HpyCH4III ACNGT 1 cut(s) 349
HpyCH4V TGCA 3 cut(s) 80, 705, 943
HpyF3I CTNAG 8 cut(s) 20, 94, 169, 294, 886, 997, 1106, 1161
Hsp92I GRCGYC 3 cut(s) 257, 836, 1025
Hsp92II CATG 5 cut(s) 202, 233, 455, 604, 829
HspAI GCGC 6 cut(s) 323, 390, 646, 817, 836, 1001
KasI GGCGCC 1 cut(s) 835
KflI GGGWCCC 1 cut(s) 246
Kpn2I TCCGGA 1 cut(s) 526
Kzo9I GATC 5 cut(s) 46, 109, 426, 523, 807
LmnI GCTCC 5 cut(s) 406, 475, 583, 690, 850
LweI GCATC 3 cut(s) 168, 276, 502
MaeI CTAG 1 cut(s) 626
MaeIII GTNAC 2 cut(s) 274, 769
MalI GATC 5 cut(s) 48, 111, 428, 525, 809
MboI GATC 5 cut(s) 46, 109, 426, 523, 807
MfeI CAATTG 1 cut(s) 545
MflI RGATCY 1 cut(s) 523
MhlI GDGCHC 1 cut(s) 806
MlsI TGGCCA 1 cut(s) 89
MluCI AATT 3 cut(s) 545, 1084, 1099
MluNI TGGCCA 1 cut(s) 89
Mly113I GGCGCC 1 cut(s) 836
MlyI GAGTC 2 cut(s) 161, 260
MmeI TCCRAC 2 cut(s) 774, 828
Mox20I TGGCCA 1 cut(s) 89
MroI TCCGGA 1 cut(s) 526
MscI TGGCCA 1 cut(s) 89
MslI CAYNNNNRTG 1 cut(s) 830
Msp20I TGGCCA 1 cut(s) 89
MspA1I CMGCKG 1 cut(s) 841
MspI CCGG 4 cut(s) 335, 527, 858, 1022
MspR9I CCNGG 2 cut(s) 1022, 1035
MunI CAATTG 1 cut(s) 545
MvaI CCWGG 1 cut(s) 1035
MvnI CGCG 2 cut(s) 817, 819
NarI GGCGCC 1 cut(s) 836
NciI CCSGG 1 cut(s) 1022
NdeII GATC 5 cut(s) 46, 109, 426, 523, 807
NlaIII CATG 5 cut(s) 202, 233, 455, 604, 829
NlaIV GGNNCC 4 cut(s) 247, 248, 585, 837
NmeAIII GCCGAG 2 cut(s) 189, 612
NmuCI GTSAC 2 cut(s) 274, 769
NspV TTCGAA 1 cut(s) 1150
PagI TCATGA 1 cut(s) 600
PceI AGGCCT 1 cut(s) 377
PcsI WCGNNNNNNNCGW 2 cut(s) 275, 338
PfeI GAWTC 2 cut(s) 118, 1147
PflFI GACNNNGTC 1 cut(s) 259
PflMI CCANNNNNTGG 2 cut(s) 359, 1010
Ple19I CGATCG 1 cut(s) 49
PleI GAGTC 2 cut(s) 161, 260
PluTI GGCGCC 1 cut(s) 839
PpsI GAGTC 2 cut(s) 161, 260
PpuMI RGGWCCY 2 cut(s) 246, 744
Psp5II RGGWCCY 2 cut(s) 246, 744
Psp6I CCWGG 1 cut(s) 1033
PspGI CCWGG 1 cut(s) 1033
PspN4I GGNNCC 4 cut(s) 247, 248, 585, 837
PspPI GGNCC 2 cut(s) 246, 744
PspPPI RGGWCCY 2 cut(s) 246, 744
PsuI RGATCY 1 cut(s) 523
PsyI GACNNNGTC 1 cut(s) 259
PvuI CGATCG 1 cut(s) 49
RsaI GTAC 3 cut(s) 52, 638, 653
RsaNI GTAC 3 cut(s) 51, 637, 652
RseI CAYNNNNRTG 1 cut(s) 830
Sau3AI GATC 5 cut(s) 46, 109, 426, 523, 807
Sau96I GGNCC 2 cut(s) 246, 744
SchI GAGTC 2 cut(s) 161, 260
ScrFI CCNGG 2 cut(s) 1022, 1035
SduI GDGCHC 1 cut(s) 806
SfaNI GCATC 3 cut(s) 168, 276, 502
SfcI CTRYAG 1 cut(s) 345
SfoI GGCGCC 1 cut(s) 837
SfuI TTCGAA 1 cut(s) 1150
SgrAI CRCCGGYG 1 cut(s) 334
SinI GGWCC 2 cut(s) 246, 744
SmiMI CAYNNNNRTG 1 cut(s) 830
SmlI CTYRAG 1 cut(s) 154
SmoI CTYRAG 1 cut(s) 154
Sse9I AATT 3 cut(s) 545, 1084, 1099
SseBI AGGCCT 1 cut(s) 377
SsiI CCGC 5 cut(s) 455, 720, 815, 819, 839
SspDI GGCGCC 1 cut(s) 835
SspMI CTAG 1 cut(s) 626
StuI AGGCCT 1 cut(s) 377
StyD4I CCNGG 2 cut(s) 1020, 1033
StyI CCWWGG 1 cut(s) 686
TaaI ACNGT 1 cut(s) 349
TaqI TCGA 5 cut(s) 165, 425, 618, 761, 1150
TasI AATT 3 cut(s) 545, 1084, 1099
TauI GCSGC 4 cut(s) 458, 817, 822, 841
TfiI GAWTC 2 cut(s) 118, 1147
TscAI CASTG 3 cut(s) 354, 877, 1069
TseFI GTSAC 2 cut(s) 274, 769
Tsp45I GTSAC 2 cut(s) 274, 769
TspDTI ATGAA 3 cut(s) 187, 459, 589
TspGWI ACGGA 2 cut(s) 233, 1131
TspRI CASTG 3 cut(s) 354, 877, 1069
Tth111I GACNNNGTC 1 cut(s) 259
Van91I CCANNNNNTGG 2 cut(s) 359, 1010
VpaK11BI GGWCC 2 cut(s) 246, 744
XmiI GTMKAC 2 cut(s) 10, 344
XspI CTAG 1 cut(s) 626
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.