pycom13g12950
WRKY Family

WRKY transcription factor

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Reverse (-)
9154513 .. 9156319
1807 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g12950.1

Sequence Viewer

Length: 1218 bp
ATGGATGGTAGGGAAGAAAAGCTAAAGACCACCGATCGTAGCAACAGCATGGCAAATTCGGCAGTTTTCTCCGACGAGATTCCGACCAACTTTCCTTCATTTTCCGGCATATTCGACCTGCCATCTTCGTGCGAAGATCAAAAGGGTTCTCTTGGAGGGTTCATGGACTTGCTCGGAATCCCAGACTACGCTTCTTCTCTATTCGATTTCCCTCAAACTACGTCGTCGCTCATGATGATGCCACCTCACCACAATCAACAACAACCACTTCCCTCTCCAGCATCTACTTCTACAGTAGTAGCGCTGCCGGAGAGGGAGAGTGCTACTACTACCAATACAACCTCGGAGGTTTTGAACAGCGGTACGGCTCCGACAACGCCGAACTCGTCTTCGATCTCTTCGTCGTCGAATGAAGCTGCGGCGAATAATAATGAGGGCCAAATGACAAAAGTGCAGGAAGAGGAAGCCGATGAGCAAGATCCAGAGAAAACCCAGAAACAATTGAAACCGAAAAAGAAGAACCAAAAAAGGCAGAGGGAGCCGAGATTTGCGTTCAAGACAAAGAGTGAGGTTGATAACCTAGATGATGGCTACCGATGGCGAAAATACGGCCAAAAAGCTGTCAAAAATAGCCCTTATCCCAGGAGCTATTATCGTTGCACCACTGCGGGCTGTGGTGTGAAGAAGAGGGTGGAGAGGTCGTCCGACGACCCGTCCACTGTGGTCACCACATACGAAGGCCAACACACGCATCCAAGTCCCATTACACCGCGTGGCACAATGGGAATTGCACCACTGCCGCATCAGTCTACTGGGTTTATATCTGCTGCGGAGGCGTCATCAAATCCCTTTGGTGTTCAGCAGTTTTTACCTCATCATCATCACTATCAACAACAGCAGCAACAGCAATATGCTTATATGTATCAATCCTCCCCTTCTTTGAATATCAGCTCTTCCACCTACGGTGGTGGTGCTGGTGGCGGTCCTTTTAATCCCTCCTCATTTTCTACTAGTTTACTTCAAGAGAGATATAATTTTGAAGGACCCCCTTCTTCTTCTTCGGCTACCAATTTTCTTAGAGACCATGGACTTCTTCAGGATATCGTGCCGCAGATTCGAAAGGAGCCCAAAGAAGAAGATCGATCATCATCAACATCAATAGAATGGATCATAATATTGATTATTGTTTTATGTGTTAATTGCTGCCATGGTATTTAA

Protein Analysis

406

Amino Acids

44.57

Weight (kDa)

6.02

Isoelectric Point (pI)

63.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WRKY PF03106 195 - 252 6e-28 WRKY DNA -binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014718)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 126
AccI GTMKAC 1 cut(s) 809
AccII CGCG 1 cut(s) 772
AciI CCGC 8 cut(s) 360, 419, 668, 770, 800, 830, 981, 1109
AclWI GGATC 2 cut(s) 473, 1175
AcoI YGGCCR 1 cut(s) 610
AcsI RAATTY 1 cut(s) 55
AcuI CTGAAG 1 cut(s) 1079
AcyI GRCGYC 1 cut(s) 836
AdeI CACNNNGTG 1 cut(s) 773
AfaI GTAC 1 cut(s) 364
AfeI AGCGCT 1 cut(s) 303
AgsI TTSAA 6 cut(s) 355, 505, 556, 943, 1022, 1040
AhdI GACNNNNNGTC 1 cut(s) 712
AhlI ACTAGT 1 cut(s) 1010
AjnI CCWGG 1 cut(s) 641
AluBI AGCT 5 cut(s) 22, 416, 620, 648, 951
AluI AGCT 5 cut(s) 22, 416, 620, 648, 951
Alw26I GTCTC 1 cut(s) 1074
AlwI GGATC 2 cut(s) 473, 1175
Aor51HI AGCGCT 1 cut(s) 303
AoxI GGCC 3 cut(s) 436, 610, 739
ApeKI GCWGC 5 cut(s) 304, 416, 827, 898, 1203
ApoI RAATTY 1 cut(s) 55
AspLEI GCGC 1 cut(s) 304
AspS9I GGNCC 3 cut(s) 436, 983, 1043
AsuHPI GGTGA 2 cut(s) 239, 718
AsuII TTCGAA 1 cut(s) 1117
AvaII GGWCC 2 cut(s) 983, 1043
BanII GRGCYC 1 cut(s) 1128
BbsI GAAGAC 1 cut(s) 381
BbvI GCAGC 5 cut(s) 291, 403, 814, 910, 1190
BccI CCATC 3 cut(s) 130, 581, 591
BceAI ACGGC 2 cut(s) 381, 625
BciT130I CCWGG 1 cut(s) 643
BcoDI GTCTC 1 cut(s) 1074
BcuI ACTAGT 1 cut(s) 1010
BfaI CTAG 2 cut(s) 581, 1011
BfmI CTRYAG 1 cut(s) 291
BfoI RGCGCY 1 cut(s) 305
BfuAI ACCTGC 1 cut(s) 126
BisI GCNGC 8 cut(s) 305, 417, 420, 800, 828, 899, 1109, 1204
BlsI GCNGC 8 cut(s) 306, 418, 421, 801, 829, 900, 1110, 1205
Bme1390I CCNGG 1 cut(s) 643
Bme18I GGWCC 2 cut(s) 983, 1043
BmeRI GACNNNNNGTC 1 cut(s) 712
BmgT120I GGNCC 3 cut(s) 436, 983, 1043
BmiI GGNNCC 4 cut(s) 369, 540, 1045, 1125
BmrFI CCNGG 1 cut(s) 643
BmrI ACTGGG 1 cut(s) 822
BmsI GCATC 4 cut(s) 228, 290, 760, 811
BmuI ACTGGG 1 cut(s) 822
BpiI GAAGAC 1 cut(s) 381
BpmI CTGGAG 1 cut(s) 261
Bpu14I TTCGAA 1 cut(s) 1117
Bsa29I ATCGAT 1 cut(s) 1141
BsaBI GATNNNNATC 1 cut(s) 1147
BsaHI GRCGYC 1 cut(s) 836
BsaI GGTCTC 1 cut(s) 1074
BsaJI CCNNGG 4 cut(s) 342, 641, 1084, 1207
BsaXI ACNNNNNCTCC 2 cut(s) 686, 716
Bse1I ACTGG 1 cut(s) 817
Bse8I GATNNNNATC 1 cut(s) 1147
BseBI CCWGG 1 cut(s) 643
BseCI ATCGAT 1 cut(s) 1141
BseDI CCNNGG 4 cut(s) 342, 641, 1084, 1207
BseGI GGATG 2 cut(s) 10, 751
BseJI GATNNNNATC 1 cut(s) 1147
BseNI ACTGG 1 cut(s) 817
BseRI GAGGAG 1 cut(s) 988
BseXI GCAGC 5 cut(s) 291, 403, 814, 910, 1190
BsgI GTGCAG 1 cut(s) 473
Bsh1236I CGCG 1 cut(s) 772
Bsh1285I CGRYCG 1 cut(s) 37
BshFI GGCC 3 cut(s) 438, 612, 741
BshVI ATCGAT 1 cut(s) 1141
BsiEI CGRYCG 1 cut(s) 37
BsiSI CCGG 2 cut(s) 105, 308
BslFI GGGAC 1 cut(s) 744
BsmAI GTCTC 1 cut(s) 1074
BsmFI GGGAC 1 cut(s) 744
BsnI GGCC 3 cut(s) 438, 612, 741
Bso31I GGTCTC 1 cut(s) 1074
Bsp119I TTCGAA 1 cut(s) 1117
Bsp1286I GDGCHC 1 cut(s) 1128
Bsp143I GATC 7 cut(s) 34, 136, 393, 478, 1138, 1142, 1167
Bsp19I CCATGG 2 cut(s) 1084, 1207
BspACI CCGC 8 cut(s) 360, 419, 668, 770, 800, 830, 981, 1109
BspANI GGCC 3 cut(s) 438, 612, 741
BspDI ATCGAT 1 cut(s) 1141
BspFNI CGCG 1 cut(s) 772
BspHI TCATGA 1 cut(s) 231
BspLI GGNNCC 4 cut(s) 369, 540, 1045, 1125
BspMI ACCTGC 1 cut(s) 126
BspPI GGATC 2 cut(s) 473, 1175
BspQI GCTCTTC 1 cut(s) 958
BspT104I TTCGAA 1 cut(s) 1117
BspTNI GGTCTC 1 cut(s) 1074
BsrI ACTGG 1 cut(s) 817
BssECI CCNNGG 4 cut(s) 342, 641, 1084, 1207
BssMI GATC 7 cut(s) 34, 136, 393, 478, 1138, 1142, 1167
BssNI GRCGYC 1 cut(s) 836
BssT1I CCWWGG 2 cut(s) 1084, 1207
Bst2UI CCWGG 1 cut(s) 643
Bst4CI ACNGT 3 cut(s) 295, 721, 965
Bst6I CTCTTC 4 cut(s) 403, 453, 680, 958
BstACI GRCGYC 1 cut(s) 836
BstBI TTCGAA 1 cut(s) 1117
BstC8I GCNNGC 1 cut(s) 670
BstDEI CTNAG 1 cut(s) 1076
BstDSI CCRYGG 2 cut(s) 1084, 1207
BstEII GGTNACC 1 cut(s) 724
BstF5I GGATG 2 cut(s) 10, 751
BstFNI CGCG 1 cut(s) 772
BstH2I RGCGCY 1 cut(s) 305
BstHHI GCGC 1 cut(s) 304
BstKTI GATC 7 cut(s) 37, 139, 396, 481, 1141, 1145, 1170
BstMAI GTCTC 1 cut(s) 1074
BstMBI GATC 7 cut(s) 34, 136, 393, 478, 1138, 1142, 1167
BstMCI CGRYCG 1 cut(s) 37
BstMWI GCNNNNNNNGC 4 cut(s) 59, 538, 833, 904
BstNI CCWGG 1 cut(s) 643
BstPI GGTNACC 1 cut(s) 724
BstSCI CCNGG 1 cut(s) 641
BstSFI CTRYAG 1 cut(s) 291
BstUI CGCG 1 cut(s) 772
BstV1I GCAGC 5 cut(s) 291, 403, 814, 910, 1190
BstV2I GAAGAC 1 cut(s) 381
BstX2I RGATCY 1 cut(s) 478
BstYI RGATCY 1 cut(s) 478
Bsu15I ATCGAT 1 cut(s) 1141
BsuRI GGCC 3 cut(s) 438, 612, 741
BsuTUI ATCGAT 1 cut(s) 1141
BtgI CCRYGG 2 cut(s) 1084, 1207
BtsCI GGATG 2 cut(s) 10, 751
BtsI GCAGTG 2 cut(s) 663, 794
BtsIMutI CAGTG 3 cut(s) 663, 717, 794
BveI ACCTGC 1 cut(s) 126
Cac8I GCNNGC 1 cut(s) 670
CciI TCATGA 1 cut(s) 231
CfoI GCGC 1 cut(s) 304
Cfr13I GGNCC 3 cut(s) 436, 983, 1043
ClaI ATCGAT 1 cut(s) 1141
CseI GACGC 1 cut(s) 825
Csp6I GTAC 1 cut(s) 363
CviAII CATG 5 cut(s) 49, 163, 232, 1085, 1208
CviQI GTAC 1 cut(s) 363
DdeI CTNAG 1 cut(s) 1076
DpnI GATC 7 cut(s) 36, 138, 395, 480, 1140, 1144, 1169
DpnII GATC 7 cut(s) 34, 136, 393, 478, 1138, 1142, 1167
DraIII CACNNNGTG 1 cut(s) 773
DriI GACNNNNNGTC 1 cut(s) 712
EaeI YGGCCR 1 cut(s) 610
Eam1104I CTCTTC 4 cut(s) 403, 453, 680, 958
Eam1105I GACNNNNNGTC 1 cut(s) 712
EarI CTCTTC 4 cut(s) 403, 453, 680, 958
Eco130I CCWWGG 2 cut(s) 1084, 1207
Eco24I GRGCYC 1 cut(s) 1128
Eco31I GGTCTC 1 cut(s) 1074
Eco32I GATATC 1 cut(s) 1102
Eco47I GGWCC 2 cut(s) 983, 1043
Eco47III AGCGCT 1 cut(s) 303
Eco57I CTGAAG 1 cut(s) 1079
Eco91I GGTNACC 1 cut(s) 724
EcoO109I RGGNCCY 1 cut(s) 1043
EcoO65I GGTNACC 1 cut(s) 724
EcoRII CCWGG 1 cut(s) 641
EcoRV GATATC 1 cut(s) 1102
EcoT14I CCWWGG 2 cut(s) 1084, 1207
EcoT38I GRGCYC 1 cut(s) 1128
ErhI CCWWGG 2 cut(s) 1084, 1207
FaeI CATG 5 cut(s) 52, 166, 235, 1088, 1211
FaqI GGGAC 1 cut(s) 744
FatI CATG 5 cut(s) 48, 162, 231, 1084, 1207
FauI CCCGC 1 cut(s) 661
FblI GTMKAC 1 cut(s) 809
Fnu4HI GCNGC 8 cut(s) 305, 417, 420, 800, 828, 899, 1109, 1204
FokI GGATG 2 cut(s) 17, 738
FriOI GRGCYC 1 cut(s) 1128
Fsp4HI GCNGC 8 cut(s) 305, 417, 420, 800, 828, 899, 1109, 1204
FspBI CTAG 2 cut(s) 581, 1011
GlaI GCGC 1 cut(s) 303
GluI GCNGC 8 cut(s) 305, 417, 420, 800, 828, 899, 1109, 1204
GsuI CTGGAG 1 cut(s) 261
HaeII RGCGCY 1 cut(s) 305
HaeIII GGCC 3 cut(s) 438, 612, 741
HapII CCGG 2 cut(s) 105, 308
HgaI GACGC 1 cut(s) 825
HhaI GCGC 1 cut(s) 304
Hin1I GRCGYC 1 cut(s) 836
Hin1II CATG 5 cut(s) 52, 166, 235, 1088, 1211
Hin6I GCGC 1 cut(s) 302
HinP1I GCGC 1 cut(s) 302
HinfI GANTC 3 cut(s) 79, 177, 1114
HpaII CCGG 2 cut(s) 105, 308
HphI GGTGA 2 cut(s) 239, 718
Hpy166II GTNNAC 3 cut(s) 717, 810, 1016
Hpy188I TCNGA 6 cut(s) 73, 84, 176, 346, 372, 706
Hpy188III TCNNGA 5 cut(s) 232, 482, 556, 1022, 1097
Hpy8I GTNNAC 3 cut(s) 717, 810, 1016
Hpy99I CGWCG 6 cut(s) 77, 226, 229, 406, 409, 710
HpyAV CCTTC 5 cut(s) 105, 731, 945, 1034, 1059
HpyCH4III ACNGT 3 cut(s) 295, 721, 965
HpyCH4IV ACGT 1 cut(s) 221
HpyCH4V TGCA 3 cut(s) 454, 660, 791
HpyF10VI GCNNNNNNNGC 4 cut(s) 59, 538, 833, 904
HpyF3I CTNAG 1 cut(s) 1076
HpySE526I ACGT 1 cut(s) 221
Hsp92I GRCGYC 1 cut(s) 836
Hsp92II CATG 5 cut(s) 52, 166, 235, 1088, 1211
HspAI GCGC 1 cut(s) 302
Kzo9I GATC 7 cut(s) 34, 136, 393, 478, 1138, 1142, 1167
LguI GCTCTTC 1 cut(s) 958
LmnI GCTCC 4 cut(s) 373, 538, 645, 1123
Lsp1109I GCAGC 5 cut(s) 291, 403, 814, 910, 1190
LweI GCATC 4 cut(s) 228, 290, 760, 811
MaeI CTAG 2 cut(s) 581, 1011
MaeII ACGT 1 cut(s) 221
MaeIII GTNAC 1 cut(s) 724
MalI GATC 7 cut(s) 36, 138, 395, 480, 1140, 1144, 1169
MboI GATC 7 cut(s) 34, 136, 393, 478, 1138, 1142, 1167
MfeI CAATTG 1 cut(s) 500
MflI RGATCY 1 cut(s) 478
MhlI GDGCHC 1 cut(s) 1128
MluCI AATT 6 cut(s) 55, 500, 786, 1033, 1069, 1198
MmeI TCCRAC 4 cut(s) 96, 107, 395, 729
MseI TTAA 3 cut(s) 990, 1197, 1216
MslI CAYNNNNRTG 2 cut(s) 127, 236
MspA1I CMGCKG 1 cut(s) 360
MspI CCGG 2 cut(s) 105, 308
MspR9I CCNGG 1 cut(s) 643
MunI CAATTG 1 cut(s) 500
MvaI CCWGG 1 cut(s) 643
MvnI CGCG 1 cut(s) 772
MwoI GCNNNNNNNGC 4 cut(s) 59, 538, 833, 904
NcoI CCATGG 2 cut(s) 1084, 1207
NdeII GATC 7 cut(s) 34, 136, 393, 478, 1138, 1142, 1167
NlaIII CATG 5 cut(s) 52, 166, 235, 1088, 1211
NlaIV GGNNCC 4 cut(s) 369, 540, 1045, 1125
NmeAIII GCCGAG 1 cut(s) 567
NmuCI GTSAC 1 cut(s) 724
NspV TTCGAA 1 cut(s) 1117
PagI TCATGA 1 cut(s) 231
PciSI GCTCTTC 1 cut(s) 958
PcsI WCGNNNNNNNCGW 2 cut(s) 383, 398
PfeI GAWTC 3 cut(s) 79, 177, 1114
PkrI GCNGC 8 cut(s) 306, 418, 421, 801, 829, 900, 1110, 1205
Ple19I CGATCG 1 cut(s) 37
PpuMI RGGWCCY 1 cut(s) 1043
Psp5II RGGWCCY 1 cut(s) 1043
Psp6I CCWGG 1 cut(s) 641
PspEI GGTNACC 1 cut(s) 724
PspGI CCWGG 1 cut(s) 641
PspN4I GGNNCC 4 cut(s) 369, 540, 1045, 1125
PspPI GGNCC 3 cut(s) 436, 983, 1043
PspPPI RGGWCCY 1 cut(s) 1043
PsuI RGATCY 1 cut(s) 478
PvuI CGATCG 1 cut(s) 37
RsaI GTAC 1 cut(s) 364
RsaNI GTAC 1 cut(s) 363
RseI CAYNNNNRTG 2 cut(s) 127, 236
SapI GCTCTTC 1 cut(s) 958
SaqAI TTAA 3 cut(s) 990, 1197, 1216
SatI GCNGC 8 cut(s) 305, 417, 420, 800, 828, 899, 1109, 1204
Sau3AI GATC 7 cut(s) 34, 136, 393, 478, 1138, 1142, 1167
Sau96I GGNCC 3 cut(s) 436, 983, 1043
ScrFI CCNGG 1 cut(s) 643
SduI GDGCHC 1 cut(s) 1128
SfaNI GCATC 4 cut(s) 228, 290, 760, 811
SfcI CTRYAG 1 cut(s) 291
SfuI TTCGAA 1 cut(s) 1117
SinI GGWCC 2 cut(s) 983, 1043
SmiMI CAYNNNNRTG 2 cut(s) 127, 236
SpeI ACTAGT 1 cut(s) 1010
Sse9I AATT 6 cut(s) 55, 500, 786, 1033, 1069, 1198
SsiI CCGC 8 cut(s) 360, 419, 668, 770, 800, 830, 981, 1109
SspI AATATT 1 cut(s) 1176
SspMI CTAG 2 cut(s) 581, 1011
StyD4I CCNGG 1 cut(s) 641
StyI CCWWGG 2 cut(s) 1084, 1207
TaaI ACNGT 3 cut(s) 295, 721, 965
TaiI ACGT 1 cut(s) 224
TaqI TCGA 6 cut(s) 114, 204, 392, 407, 1117, 1141
TasI AATT 6 cut(s) 55, 500, 786, 1033, 1069, 1198
TauI GCSGC 3 cut(s) 422, 802, 1111
TfiI GAWTC 3 cut(s) 79, 177, 1114
Tru1I TTAA 3 cut(s) 990, 1197, 1216
Tru9I TTAA 3 cut(s) 990, 1197, 1216
TscAI CASTG 3 cut(s) 670, 724, 801
TseFI GTSAC 1 cut(s) 724
TseI GCWGC 5 cut(s) 304, 416, 827, 898, 1203
Tsp45I GTSAC 1 cut(s) 724
TspDTI ATGAA 3 cut(s) 87, 151, 426
TspRI CASTG 3 cut(s) 670, 724, 801
VpaK11BI GGWCC 2 cut(s) 983, 1043
XapI RAATTY 1 cut(s) 55
XmiI GTMKAC 1 cut(s) 809
XspI CTAG 2 cut(s) 581, 1011
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.