Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0006342

Physical Location & Seq

Genomic Coordinates Forward (+)

25493508 .. 25496709

Gene Structure 3202 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g22830.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGATGTGGAAGAAACAAAAGGTTCCTTCAACTACGGCAAGCCTCCATGGATTTTCAAAGGCAGAGCATTGTATCAACTCCATCTTGTCAAGGCAGCGACTGTTCGAGCATGCATCCCTAAAGAGTTAAGATTAGTTGAAGCATTTGGTTATACTCTTGGCGGGTTTTTTCTTGCTAACTATGATGATAGCCCAGCTGGAGTCTTTGATGAGCTTGTTGTGATTGCTGGACTTGTATGGAGCCCTCCAACATCTTGCGCATGGGCAGCAAAGGTGCTTGTGAATAGCAATGAAGCTTGTGATCATGGGCGAAAGGAAGTAGGCCTACCAAGTCAAGTTGCGAGGTTTTCTAAGAGAATTACAGCAGTTTCAAGACAACCACAGACAAAACAAAGCGAATTTCTAAATGCAATTGGCATGAATGGTGTTATCTCTAATCCAGAAGAGCAGATACATGTTCAAGTGACTGAAATCATGGATCATGCTTCAAAAGATGCCTGTAATGTCAACCTTACCACTTCCATGCCTGCATTGGACGGTAACAAGTGGATGGGACCAGCAATCAAAATGTCACTTCCAAGTTTTAGCGGTCGCACAAAGTATTATCCAGACCTTCTCAAGTACTCTTGCATGATCGACTGCAGGGTACGAGCAGTGCATCCAGCCAAAGTCTCAGGGCCATCTCCTGTGCCAACAAATGAGAACGAACAATCTTCAGACAGTCATTGTTACCATACGCAGAATCAAAAAGAAATCACGGACAATGTGCAGAACCTTACCAGAGCCGTGATGCTATCAAAACCGTTATTGGCATTGGAGTTCAGTTCTATGAAAATGCAGGTTGAAGCTCCGGTTGTAATTTCCAATTACTTTAAGAACAACTCTTTAGCAACTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

300

Amino Acids

32.98

Weight (kDa)

8.1

Isoelectric Point (pI)

50.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006342)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28100 AT1G28100 AT1G28100 AT1G28100 AT1G28100 AT1G28100
fragaria_vesca	FvH4_4g22830 FvH4_4g22830
malus_domestica	MD13G1129300.v1.1 MD16G1129300.v1.1
prunus_persica	Prupe.1G217100_v2.0.a1 Prupe.1G217100_v2.0.a1 Prupe.1G217100_v2.0.a1
pyrus_communis	pycom13g11230 pycom16g10960
rosa_chinensis	RchiOBHm_Chr4g0429061
rosa_laevigata	RLG00000007100
rosa_multiflora	Rmu_sc0008629.1_g000020
rosa_roxburghii	Rroxscaffold_5G00370700
rosa_rugosa	Rorug04G0232400 Rorug04G0232500 Rorug04G0232600
rosa_samantha	Rh4AG288400 Rh4BG294600 Rh4CG310100 Rh4DG291500
rosa_wichuraiana	Rw4G025000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	259
Acc36I	ACCTGC	1 cut(s)	829
AciI	CCGC	2 cut(s)	162, 588
AclWI	GGATC	1 cut(s)	486
AcsI	RAATTY	1 cut(s)	398
AcuI	CTGAAG	1 cut(s)	699
AfaI	GTAC	2 cut(s)	623, 648
AflIII	ACRYGT	1 cut(s)	454
AgsI	TTSAA	7 cut(s)	31, 58, 140, 372, 461, 489, 845
AluBI	AGCT	4 cut(s)	197, 214, 296, 848
AluI	AGCT	4 cut(s)	197, 214, 296, 848
Alw26I	GTCTC	1 cut(s)	676
AlwI	GGATC	1 cut(s)	486
AlwNI	CAGNNNCTG	1 cut(s)	101
AoxI	GGCC	2 cut(s)	322, 677
ApeKI	GCWGC	2 cut(s)	95, 266
ApoI	RAATTY	1 cut(s)	398
AspLEI	GCGC	1 cut(s)	260
AspS9I	GGNCC	2 cut(s)	554, 677
AvaII	GGWCC	1 cut(s)	554
BanII	GRGCYC	1 cut(s)	245
BarI	GAAGNNNNNNTAC	4 cut(s)	309, 341, 435, 467
BbvI	GCAGC	2 cut(s)	107, 278
BccI	CCATC	3 cut(s)	90, 544, 688
BceAI	ACGGC	2 cut(s)	52, 770
BclI	TGATCA	1 cut(s)	301
BcoDI	GTCTC	1 cut(s)	676
BfmI	CTRYAG	1 cut(s)	640
BfuAI	ACCTGC	1 cut(s)	829
BisI	GCNGC	2 cut(s)	96, 267
BlsI	GCNGC	2 cut(s)	97, 268
BmcAI	AGTACT	1 cut(s)	623
Bme18I	GGWCC	1 cut(s)	554
BmgT120I	GGNCC	2 cut(s)	554, 677
BmiI	GGNNCC	3 cut(s)	25, 242, 555
BmsI	GCATC	4 cut(s)	123, 484, 667, 780
BpmI	CTGGAG	1 cut(s)	219
BpuEI	CTTGAG	1 cut(s)	602
BsaJI	CCNNGG	1 cut(s)	47
BsaWI	WCCGGW	1 cut(s)	850
Bse3DI	GCAATG	1 cut(s)	295
BseDI	CCNNGG	1 cut(s)	47
BseGI	GGATG	4 cut(s)	10, 114, 555, 658
BseMI	GCAATG	1 cut(s)	295
BseMII	CTCAG	1 cut(s)	687
BseXI	GCAGC	2 cut(s)	107, 278
BseYI	CCCAGC	1 cut(s)	193
BsgI	GTGCAG	1 cut(s)	788
Bsh1285I	CGRYCG	1 cut(s)	592
BshFI	GGCC	2 cut(s)	324, 679
BsiEI	CGRYCG	1 cut(s)	592
BsiSI	CCGG	1 cut(s)	851
BslFI	GGGAC	1 cut(s)	567
BsmAI	GTCTC	1 cut(s)	676
BsmFI	GGGAC	1 cut(s)	567
BsnI	GGCC	2 cut(s)	324, 679
Bsp1286I	GDGCHC	1 cut(s)	245
Bsp143I	GATC	3 cut(s)	301, 478, 633
Bsp19I	CCATGG	1 cut(s)	47
BspACI	CCGC	2 cut(s)	162, 588
BspANI	GGCC	2 cut(s)	324, 679
BspCNI	CTCAG	1 cut(s)	686
BspLI	GGNNCC	3 cut(s)	25, 242, 555
BspMAI	CTGCAG	1 cut(s)	644
BspMI	ACCTGC	1 cut(s)	829
BspPI	GGATC	1 cut(s)	486
BspQI	GCTCTTC	1 cut(s)	438
BsrDI	GCAATG	1 cut(s)	295
BssECI	CCNNGG	1 cut(s)	47
BssMI	GATC	3 cut(s)	301, 478, 633
BssT1I	CCWWGG	1 cut(s)	47
Bst4CI	ACNGT	4 cut(s)	103, 539, 722, 804
Bst6I	CTCTTC	1 cut(s)	438
BstC8I	GCNNGC	3 cut(s)	41, 112, 528
BstDEI	CTNAG	2 cut(s)	351, 673
BstDSI	CCRYGG	1 cut(s)	47
BstF5I	GGATG	4 cut(s)	10, 114, 555, 658
BstHHI	GCGC	1 cut(s)	260
BstKTI	GATC	3 cut(s)	304, 481, 636
BstMAI	GTCTC	1 cut(s)	676
BstMBI	GATC	3 cut(s)	301, 478, 633
BstMCI	CGRYCG	1 cut(s)	592
BstMWI	GCNNNNNNNGC	1 cut(s)	266
BstNSI	RCATGY	2 cut(s)	114, 458
BstSFI	CTRYAG	1 cut(s)	640
BstV1I	GCAGC	2 cut(s)	107, 278
BsuRI	GGCC	2 cut(s)	324, 679
BtgI	CCRYGG	1 cut(s)	47
BtsCI	GGATG	4 cut(s)	10, 114, 555, 658
BtsI	GCAGTG	1 cut(s)	660
BtsIMutI	CAGTG	1 cut(s)	660
BveI	ACCTGC	1 cut(s)	829
Cac8I	GCNNGC	3 cut(s)	41, 112, 528
CaiI	CAGNNNCTG	1 cut(s)	101
CfoI	GCGC	1 cut(s)	260
Cfr13I	GGNCC	2 cut(s)	554, 677
Csp6I	GTAC	2 cut(s)	622, 647
CviQI	GTAC	2 cut(s)	622, 647
DdeI	CTNAG	2 cut(s)	351, 673
DpnI	GATC	3 cut(s)	303, 480, 635
DpnII	GATC	3 cut(s)	301, 478, 633
Eam1104I	CTCTTC	1 cut(s)	438
EarI	CTCTTC	1 cut(s)	438
Eco130I	CCWWGG	1 cut(s)	47
Eco147I	AGGCCT	1 cut(s)	324
Eco24I	GRGCYC	1 cut(s)	245
Eco47I	GGWCC	1 cut(s)	554
Eco57I	CTGAAG	1 cut(s)	699
EcoT14I	CCWWGG	1 cut(s)	47
EcoT22I	ATGCAT	1 cut(s)	116
EcoT38I	GRGCYC	1 cut(s)	245
ErhI	CCWWGG	1 cut(s)	47
FaqI	GGGAC	1 cut(s)	567
FauI	CCCGC	1 cut(s)	155
FbaI	TGATCA	1 cut(s)	301
Fnu4HI	GCNGC	2 cut(s)	96, 267
FokI	GGATG	4 cut(s)	17, 101, 562, 645
FriOI	GRGCYC	1 cut(s)	245
Fsp4HI	GCNGC	2 cut(s)	96, 267
FspI	TGCGCA	1 cut(s)	259
GlaI	GCGC	1 cut(s)	259
GluI	GCNGC	2 cut(s)	96, 267
GsaI	CCCAGC	1 cut(s)	197
GsuI	CTGGAG	1 cut(s)	219
HaeIII	GGCC	2 cut(s)	324, 679
HapII	CCGG	1 cut(s)	851
HhaI	GCGC	1 cut(s)	260
Hin6I	GCGC	1 cut(s)	258
HinP1I	GCGC	1 cut(s)	258
HincII	GTYRAC	1 cut(s)	508
HindII	GTYRAC	1 cut(s)	508
HindIII	AAGCTT	1 cut(s)	294
HinfI	GANTC	2 cut(s)	201, 742
HpaII	CCGG	1 cut(s)	851
Hpy166II	GTNNAC	1 cut(s)	508
Hpy188I	TCNGA	1 cut(s)	718
Hpy188III	TCNNGA	4 cut(s)	372, 440, 608, 897
Hpy8I	GTNNAC	1 cut(s)	508
HpyAV	CCTTC	2 cut(s)	37, 623
HpyCH4III	ACNGT	4 cut(s)	103, 539, 722, 804
HpyCH4V	TGCA	8 cut(s)	114, 410, 530, 630, 642, 658, 769, 838
HpyF10VI	GCNNNNNNNGC	1 cut(s)	266
HpyF3I	CTNAG	2 cut(s)	351, 673
HspAI	GCGC	1 cut(s)	258
Ksp22I	TGATCA	1 cut(s)	301
Kzo9I	GATC	3 cut(s)	301, 478, 633
LguI	GCTCTTC	1 cut(s)	438
LmnI	GCTCC	2 cut(s)	240, 853
Lsp1109I	GCAGC	2 cut(s)	107, 278
LweI	GCATC	4 cut(s)	123, 484, 667, 780
MaeIII	GTNAC	4 cut(s)	463, 539, 570, 728
MalI	GATC	3 cut(s)	303, 480, 635
MboI	GATC	3 cut(s)	301, 478, 633
MboII	GAAGA	3 cut(s)	23, 455, 705
MfeI	CAATTG	1 cut(s)	411
MhlI	GDGCHC	1 cut(s)	245
MluCI	AATT	5 cut(s)	357, 398, 411, 858, 865
MlyI	GAGTC	1 cut(s)	210
MmeI	TCCRAC	1 cut(s)	272
MnlI	CCTC	3 cut(s)	54, 255, 336
Mph1103I	ATGCAT	1 cut(s)	116
MseI	TTAA	2 cut(s)	128, 873
MslI	CAYNNNNRTG	1 cut(s)	521
MspA1I	CMGCKG	1 cut(s)	197
MspI	CCGG	1 cut(s)	851
MunI	CAATTG	1 cut(s)	411
MwoI	GCNNNNNNNGC	1 cut(s)	266
NcoI	CCATGG	1 cut(s)	47
NdeII	GATC	3 cut(s)	301, 478, 633
NlaIV	GGNNCC	3 cut(s)	25, 242, 555
NmuCI	GTSAC	2 cut(s)	463, 570
NsbI	TGCGCA	1 cut(s)	259
NsiI	ATGCAT	1 cut(s)	116
NspI	RCATGY	2 cut(s)	114, 458
PaeI	GCATGC	1 cut(s)	114
PceI	AGGCCT	1 cut(s)	324
PciI	ACATGT	1 cut(s)	454
PciSI	GCTCTTC	1 cut(s)	438
PfeI	GAWTC	1 cut(s)	742
PkrI	GCNGC	2 cut(s)	97, 268
PleI	GAGTC	1 cut(s)	209
PpsI	GAGTC	1 cut(s)	209
PscI	ACATGT	1 cut(s)	454
PspFI	CCCAGC	1 cut(s)	193
PspN4I	GGNNCC	3 cut(s)	25, 242, 555
PspPI	GGNCC	2 cut(s)	554, 677
PstI	CTGCAG	1 cut(s)	644
PstNI	CAGNNNCTG	1 cut(s)	101
PvuII	CAGCTG	1 cut(s)	197
RsaI	GTAC	2 cut(s)	623, 648
RsaNI	GTAC	2 cut(s)	622, 647
RseI	CAYNNNNRTG	1 cut(s)	521
SapI	GCTCTTC	1 cut(s)	438
SaqAI	TTAA	2 cut(s)	128, 873
SatI	GCNGC	2 cut(s)	96, 267
Sau3AI	GATC	3 cut(s)	301, 478, 633
Sau96I	GGNCC	2 cut(s)	554, 677
ScaI	AGTACT	1 cut(s)	623
SchI	GAGTC	1 cut(s)	210
SduI	GDGCHC	1 cut(s)	245
SfaNI	GCATC	4 cut(s)	123, 484, 667, 780
SfcI	CTRYAG	1 cut(s)	640
SinI	GGWCC	1 cut(s)	554
SmiMI	CAYNNNNRTG	1 cut(s)	521
SmlI	CTYRAG	1 cut(s)	617
SmoI	CTYRAG	1 cut(s)	617
SphI	GCATGC	1 cut(s)	114
Sse9I	AATT	5 cut(s)	357, 398, 411, 858, 865
SseBI	AGGCCT	1 cut(s)	324
SsiI	CCGC	2 cut(s)	162, 588
StuI	AGGCCT	1 cut(s)	324
StyI	CCWWGG	1 cut(s)	47
TaaI	ACNGT	4 cut(s)	103, 539, 722, 804
TaqI	TCGA	2 cut(s)	106, 636
TasI	AATT	5 cut(s)	357, 398, 411, 858, 865
TatI	WGTACW	1 cut(s)	621
TfiI	GAWTC	1 cut(s)	742
Tru1I	TTAA	2 cut(s)	128, 873
Tru9I	TTAA	2 cut(s)	128, 873
TscAI	CASTG	1 cut(s)	660
TseFI	GTSAC	2 cut(s)	463, 570
TseI	GCWGC	2 cut(s)	95, 266
Tsp45I	GTSAC	2 cut(s)	463, 570
TspDTI	ATGAA	3 cut(s)	306, 434, 845
TspGWI	ACGGA	1 cut(s)	773
TspRI	CASTG	1 cut(s)	660
VpaK11BI	GGWCC	1 cut(s)	554
XapI	RAATTY	1 cut(s)	398
XceI	RCATGY	2 cut(s)	114, 458
XcmI	CCANNNNNNNNNTGG	1 cut(s)	529
ZrmI	AGTACT	1 cut(s)	623
Zsp2I	ATGCAT	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.