Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008629.1

Orthogroup ID

OG0006342

Physical Location & Seq

Genomic Coordinates Forward (+)

83080 .. 85303

Gene Structure 2224 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008629.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

atggatgtggaagaaacaaaatgttccttcaagtacggcaagcctccgtggattttcaaaggcagagcattgtatcaactccatttggtcaaggcagcgactattcgagcatgcatccctaaagagttcagattggttgaagcatttggatatactcttggcgggttttttcttgctaactatgatgacagcccagctggagtttttgatgagcttgttgtgattgctggacttatatggagccctccaacgtcttgcgcatgggcagcaaaggtacttgtgaatagcaaagaagcttgtgatcatgggcgaaaggaagtaggccttccaagtcaagttgcaagcttttctaagggtggtttctctgatccaggagagcaggtgaacgttcaagtgactgaaatcatgggtcaagcctcaaaagatacctgtaatgtcaaccttaccactttcgtgcctgcattggacattaacaagtggatgggaccagcaatcaaaatgtcacttccaagttttagcggtcgtacagagtattatcctgaccttcttaagtactcttgccagatcgactgcagggtgcgagtagtgcatccagctaaagtatcggggccatctcctgtgccatcgaatgagaacgagaacaaacaatgttcagaaattcatagttgcaatacgcagaatcaagcaactaaagaattcatggacaatgagcagaaccttaccagagccgtgatgctatcaaagcccattttggcattggagttcagttctatgaaaatgcaggttgaagctccggttgtagtttccaactactttaagaactctttagcaacctcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

279

Amino Acids

30.75

Weight (kDa)

6.88

Isoelectric Point (pI)

42.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006342)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28100 AT1G28100 AT1G28100 AT1G28100 AT1G28100 AT1G28100
fragaria_vesca	FvH4_4g22830 FvH4_4g22830
malus_domestica	MD13G1129300.v1.1 MD16G1129300.v1.1
prunus_persica	Prupe.1G217100_v2.0.a1 Prupe.1G217100_v2.0.a1 Prupe.1G217100_v2.0.a1
pyrus_communis	pycom13g11230 pycom16g10960
rosa_chinensis	RchiOBHm_Chr4g0429061
rosa_laevigata	RLG00000007100
rosa_multiflora	Rmu_sc0008629.1_g000020
rosa_roxburghii	Rroxscaffold_5G00370700
rosa_rugosa	Rorug04G0232400 Rorug04G0232500 Rorug04G0232600
rosa_samantha	Rh4AG288400 Rh4BG294600 Rh4CG310100 Rh4DG291500
rosa_wichuraiana	Rw4G025000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	370
Acc16I	TGCGCA	1 cut(s)	259
Acc36I	ACCTGC	2 cut(s)	370, 772
AciI	CCGC	2 cut(s)	162, 519
AclI	AACGTT	1 cut(s)	387
AclWI	GGATC	1 cut(s)	362
AcsI	RAATTY	2 cut(s)	657, 695
AfaI	GTAC	4 cut(s)	35, 276, 526, 554
AflII	CTTAAG	1 cut(s)	548
AgsI	TTSAA	5 cut(s)	31, 58, 140, 392, 788
AjnI	CCWGG	1 cut(s)	370
AleI	CACNNNNGTG	1 cut(s)	452
AluBI	AGCT	6 cut(s)	197, 214, 296, 345, 596, 791
AluI	AGCT	6 cut(s)	197, 214, 296, 345, 596, 791
AlwI	GGATC	1 cut(s)	362
AoxI	GGCC	2 cut(s)	322, 608
ApeKI	GCWGC	2 cut(s)	95, 266
ApoI	RAATTY	2 cut(s)	657, 695
AspLEI	GCGC	1 cut(s)	260
AspS9I	GGNCC	2 cut(s)	485, 608
AsuHPI	GGTGA	1 cut(s)	394
AvaII	GGWCC	1 cut(s)	485
BanII	GRGCYC	1 cut(s)	245
BbvI	GCAGC	2 cut(s)	107, 278
BccI	CCATC	3 cut(s)	475, 619, 631
BceAI	ACGGC	2 cut(s)	52, 713
BciT130I	CCWGG	1 cut(s)	372
BclI	TGATCA	1 cut(s)	301
BfmI	CTRYAG	1 cut(s)	571
BfrI	CTTAAG	1 cut(s)	548
BfuAI	ACCTGC	2 cut(s)	370, 772
BisI	GCNGC	2 cut(s)	96, 267
BlsI	GCNGC	2 cut(s)	97, 268
BmcAI	AGTACT	1 cut(s)	554
Bme1390I	CCNGG	1 cut(s)	372
Bme18I	GGWCC	1 cut(s)	485
BmgT120I	GGNCC	2 cut(s)	485, 608
BmiI	GGNNCC	3 cut(s)	242, 486, 609
BmrFI	CCNGG	1 cut(s)	372
BmsI	GCATC	3 cut(s)	123, 598, 723
BpmI	CTGGAG	1 cut(s)	219
BsaJI	CCNNGG	1 cut(s)	47
BsaWI	WCCGGW	1 cut(s)	793
BsaXI	ACNNNNNCTCC	2 cut(s)	366, 396
BseBI	CCWGG	1 cut(s)	372
BseDI	CCNNGG	1 cut(s)	47
BseGI	GGATG	4 cut(s)	10, 114, 486, 589
BseXI	GCAGC	2 cut(s)	107, 278
BseYI	CCCAGC	1 cut(s)	193
Bsh1285I	CGRYCG	1 cut(s)	523
BshFI	GGCC	2 cut(s)	324, 610
BsiEI	CGRYCG	1 cut(s)	523
BsiSI	CCGG	1 cut(s)	794
BslFI	GGGAC	1 cut(s)	498
BsmFI	GGGAC	1 cut(s)	498
BsnI	GGCC	2 cut(s)	324, 610
Bsp1286I	GDGCHC	1 cut(s)	245
Bsp143I	GATC	3 cut(s)	301, 367, 564
BspACI	CCGC	2 cut(s)	162, 519
BspANI	GGCC	2 cut(s)	324, 610
BspLI	GGNNCC	3 cut(s)	242, 486, 609
BspMAI	CTGCAG	1 cut(s)	575
BspMI	ACCTGC	2 cut(s)	370, 772
BspPI	GGATC	1 cut(s)	362
BspTI	CTTAAG	1 cut(s)	548
BssECI	CCNNGG	1 cut(s)	47
BssMI	GATC	3 cut(s)	301, 367, 564
Bst2UI	CCWGG	1 cut(s)	372
BstAFI	CTTAAG	1 cut(s)	548
BstC8I	GCNNGC	4 cut(s)	41, 112, 343, 459
BstDEI	CTNAG	1 cut(s)	351
BstDSI	CCRYGG	1 cut(s)	47
BstF5I	GGATG	4 cut(s)	10, 114, 486, 589
BstHHI	GCGC	1 cut(s)	260
BstKTI	GATC	3 cut(s)	304, 370, 567
BstMBI	GATC	3 cut(s)	301, 367, 564
BstMCI	CGRYCG	1 cut(s)	523
BstMWI	GCNNNNNNNGC	3 cut(s)	266, 586, 742
BstNI	CCWGG	1 cut(s)	372
BstNSI	RCATGY	1 cut(s)	114
BstSCI	CCNGG	1 cut(s)	370
BstSFI	CTRYAG	1 cut(s)	571
BstV1I	GCAGC	2 cut(s)	107, 278
BsuRI	GGCC	2 cut(s)	324, 610
BtgI	CCRYGG	1 cut(s)	47
BtsCI	GGATG	4 cut(s)	10, 114, 486, 589
BveI	ACCTGC	2 cut(s)	370, 772
Cac8I	GCNNGC	4 cut(s)	41, 112, 343, 459
CfoI	GCGC	1 cut(s)	260
Cfr13I	GGNCC	2 cut(s)	485, 608
Csp6I	GTAC	4 cut(s)	34, 275, 525, 553
CviAII	CATG	5 cut(s)	111, 261, 305, 406, 700
CviQI	GTAC	4 cut(s)	34, 275, 525, 553
DdeI	CTNAG	1 cut(s)	351
DpnI	GATC	3 cut(s)	303, 369, 566
DpnII	GATC	3 cut(s)	301, 367, 564
Eco147I	AGGCCT	1 cut(s)	324
Eco24I	GRGCYC	1 cut(s)	245
Eco47I	GGWCC	1 cut(s)	485
EcoRI	GAATTC	1 cut(s)	695
EcoRII	CCWGG	1 cut(s)	370
EcoT22I	ATGCAT	1 cut(s)	116
EcoT38I	GRGCYC	1 cut(s)	245
FaeI	CATG	5 cut(s)	114, 264, 308, 409, 703
FalI	AAGNNNNNCTT	2 cut(s)	309, 341
FaqI	GGGAC	1 cut(s)	498
FatI	CATG	5 cut(s)	110, 260, 304, 405, 699
FauI	CCCGC	1 cut(s)	155
FbaI	TGATCA	1 cut(s)	301
Fnu4HI	GCNGC	2 cut(s)	96, 267
FokI	GGATG	4 cut(s)	17, 101, 493, 576
FriOI	GRGCYC	1 cut(s)	245
Fsp4HI	GCNGC	2 cut(s)	96, 267
FspI	TGCGCA	1 cut(s)	259
GlaI	GCGC	1 cut(s)	259
GluI	GCNGC	2 cut(s)	96, 267
GsaI	CCCAGC	1 cut(s)	197
GsuI	CTGGAG	1 cut(s)	219
HaeIII	GGCC	2 cut(s)	324, 610
HapII	CCGG	1 cut(s)	794
HhaI	GCGC	1 cut(s)	260
Hin1II	CATG	5 cut(s)	114, 264, 308, 409, 703
Hin6I	GCGC	1 cut(s)	258
HinP1I	GCGC	1 cut(s)	258
HincII	GTYRAC	1 cut(s)	439
HindII	GTYRAC	1 cut(s)	439
HindIII	AAGCTT	2 cut(s)	294, 343
HinfI	GANTC	1 cut(s)	679
HpaII	CCGG	1 cut(s)	794
HphI	GGTGA	1 cut(s)	394
Hpy166II	GTNNAC	2 cut(s)	385, 439
Hpy188I	TCNGA	3 cut(s)	131, 367, 655
Hpy188III	TCNNGA	2 cut(s)	539, 837
Hpy8I	GTNNAC	2 cut(s)	385, 439
HpyAV	CCTTC	3 cut(s)	37, 335, 554
HpyCH4IV	ACGT	2 cut(s)	251, 387
HpyCH4V	TGCA	7 cut(s)	114, 341, 461, 573, 589, 669, 781
HpyF10VI	GCNNNNNNNGC	3 cut(s)	266, 586, 742
HpyF3I	CTNAG	1 cut(s)	351
HpySE526I	ACGT	2 cut(s)	251, 387
Hsp92II	CATG	5 cut(s)	114, 264, 308, 409, 703
HspAI	GCGC	1 cut(s)	258
Ksp22I	TGATCA	1 cut(s)	301
Kzo9I	GATC	3 cut(s)	301, 367, 564
LmnI	GCTCC	2 cut(s)	240, 796
Lsp1109I	GCAGC	2 cut(s)	107, 278
LweI	GCATC	3 cut(s)	123, 598, 723
MaeII	ACGT	2 cut(s)	251, 387
MaeIII	GTNAC	2 cut(s)	394, 501
MalI	GATC	3 cut(s)	303, 369, 566
MboI	GATC	3 cut(s)	301, 367, 564
MboII	GAAGA	1 cut(s)	23
MhlI	GDGCHC	1 cut(s)	245
MluCI	AATT	2 cut(s)	657, 695
MmeI	TCCRAC	2 cut(s)	272, 831
MnlI	CCTC	3 cut(s)	54, 255, 427
Mph1103I	ATGCAT	1 cut(s)	116
MseI	TTAA	3 cut(s)	471, 549, 816
MslI	CAYNNNNRTG	1 cut(s)	452
MspA1I	CMGCKG	1 cut(s)	197
MspCI	CTTAAG	1 cut(s)	548
MspI	CCGG	1 cut(s)	794
MspR9I	CCNGG	1 cut(s)	372
MvaI	CCWGG	1 cut(s)	372
MwoI	GCNNNNNNNGC	3 cut(s)	266, 586, 742
NdeII	GATC	3 cut(s)	301, 367, 564
NlaIII	CATG	5 cut(s)	114, 264, 308, 409, 703
NlaIV	GGNNCC	3 cut(s)	242, 486, 609
NmuCI	GTSAC	2 cut(s)	394, 501
NsbI	TGCGCA	1 cut(s)	259
NsiI	ATGCAT	1 cut(s)	116
NspI	RCATGY	1 cut(s)	114
OliI	CACNNNNGTG	1 cut(s)	452
PaeI	GCATGC	1 cut(s)	114
PaqCI	CACCTGC	1 cut(s)	370
PceI	AGGCCT	1 cut(s)	324
PfeI	GAWTC	1 cut(s)	679
PfoI	TCCNGGA	1 cut(s)	370
PkrI	GCNGC	2 cut(s)	97, 268
Psp1406I	AACGTT	1 cut(s)	387
Psp6I	CCWGG	1 cut(s)	370
PspFI	CCCAGC	1 cut(s)	193
PspGI	CCWGG	1 cut(s)	370
PspN4I	GGNNCC	3 cut(s)	242, 486, 609
PspPI	GGNCC	2 cut(s)	485, 608
PstI	CTGCAG	1 cut(s)	575
PvuII	CAGCTG	1 cut(s)	197
RsaI	GTAC	4 cut(s)	35, 276, 526, 554
RsaNI	GTAC	4 cut(s)	34, 275, 525, 553
RseI	CAYNNNNRTG	1 cut(s)	452
SaqAI	TTAA	3 cut(s)	471, 549, 816
SatI	GCNGC	2 cut(s)	96, 267
Sau3AI	GATC	3 cut(s)	301, 367, 564
Sau96I	GGNCC	2 cut(s)	485, 608
ScaI	AGTACT	1 cut(s)	554
ScrFI	CCNGG	1 cut(s)	372
SduI	GDGCHC	1 cut(s)	245
SfaNI	GCATC	3 cut(s)	123, 598, 723
SfcI	CTRYAG	1 cut(s)	571
SinI	GGWCC	1 cut(s)	485
SmiMI	CAYNNNNRTG	1 cut(s)	452
SmlI	CTYRAG	1 cut(s)	548
SmoI	CTYRAG	1 cut(s)	548
SphI	GCATGC	1 cut(s)	114
Sse9I	AATT	2 cut(s)	657, 695
SseBI	AGGCCT	1 cut(s)	324
SsiI	CCGC	2 cut(s)	162, 519
StuI	AGGCCT	1 cut(s)	324
StyD4I	CCNGG	1 cut(s)	370
TaiI	ACGT	2 cut(s)	254, 390
TaqI	TCGA	3 cut(s)	106, 567, 626
TasI	AATT	2 cut(s)	657, 695
TatI	WGTACW	1 cut(s)	552
TfiI	GAWTC	1 cut(s)	679
Tru1I	TTAA	3 cut(s)	471, 549, 816
Tru9I	TTAA	3 cut(s)	471, 549, 816
TseFI	GTSAC	2 cut(s)	394, 501
TseI	GCWGC	2 cut(s)	95, 266
Tsp45I	GTSAC	2 cut(s)	394, 501
TspDTI	ATGAA	3 cut(s)	650, 688, 788
TspGWI	ACGGA	1 cut(s)	36
Vha464I	CTTAAG	1 cut(s)	548
VpaK11BI	GGWCC	1 cut(s)	485
XapI	RAATTY	2 cut(s)	657, 695
XceI	RCATGY	1 cut(s)	114
XcmI	CCANNNNNNNNNTGG	1 cut(s)	754
ZrmI	AGTACT	1 cut(s)	554
Zsp2I	ATGCAT	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.