Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006342

Physical Location & Seq

Genomic Coordinates Forward (+)

53934502 .. 53936943

Gene Structure 2442 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39790

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGATGTGGAAGAAACAAAATGTTCCTTCAAGTACGGCAAGCCTCCGTGGATTTTCAAAGGCAGAGCATTGTATCAACTCCATTTGGTCAAGGCAGCGACTATTCGAGCATGCATCCCTAAAGAGTTCAGATTGGTTGAAGCATTTGGATATACTCTTGGCGGGTTTTTTCTTGCTAACTATGATGACAGCCCAGCTGGAGTTTTTGATGAGCTTGTTGTGATTGCTGGACTTATATGGAGCCCTCCAACGTCTTGCGCATGGGCAGCAAAGGTACTTGTGAATAGCAAAGAAGCTTGTGATCATGGGCGAAAGGAAGTAGGCCTTCCAAGTCAAGTTGCAAGGTTTTCTAAGAGAATTACAGCAGTTTCAAGGAAACCAAAGACCAAACAAAGTGAATTTCTAAACTTAATTGGTATGGAGGGTGGTTTCTCTGATCCAGGAGAGCAGGTGAATGTTCAAGTGACTGAAATCATGGGTCAAGCCTCAAAAGATACCTGTAATGTCAACCTTACCACTTTCGTGCCTGCATTGGACATTAACAAGTGGATGGGACCAGCAATCAAAATGTCACTTCCAAGTTTTAGCGGTCGTACAGAGTATTATCCTGACCTTCTTAAGTACTCTTGCCAGATCGACTGCAGGGTGCGAGTAGTGCATCCAGCTAAAGTATCGGGGCCATCTCCTGTGCCATCGAACGAGAACGAGAACAAACAATGTTCAGAAATTCATAGTTGCAATACGCAGAATCAAGCAACTAAAGAATTCATGGACAATGAGCAGAACCTTACCAGAGCCGTGATGCTATCAAAGCCCATTTTGGCATTGGAGTTCAGTTCTATGAAAATGCAGGTTGAAGCTCCGGTTGTAGTTTCCAACTACTTTAAGAACTCTTTAGCAACCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

302

Amino Acids

33.45

Weight (kDa)

8.49

Isoelectric Point (pI)

44.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006342)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28100 AT1G28100 AT1G28100 AT1G28100 AT1G28100 AT1G28100
fragaria_vesca	FvH4_4g22830 FvH4_4g22830
malus_domestica	MD13G1129300.v1.1 MD16G1129300.v1.1
prunus_persica	Prupe.1G217100_v2.0.a1 Prupe.1G217100_v2.0.a1 Prupe.1G217100_v2.0.a1
pyrus_communis	pycom13g11230 pycom16g10960
rosa_chinensis	RchiOBHm_Chr4g0429061
rosa_laevigata	RLG00000007100
rosa_multiflora	Rmu_sc0008629.1_g000020
rosa_roxburghii	Rroxscaffold_5G00370700
rosa_rugosa	Rorug04G0232400 Rorug04G0232500 Rorug04G0232600
rosa_samantha	Rh4AG288400 Rh4BG294600 Rh4CG310100 Rh4DG291500
rosa_wichuraiana	Rw4G025000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	439
Acc16I	TGCGCA	1 cut(s)	259
Acc36I	ACCTGC	2 cut(s)	439, 841
AciI	CCGC	2 cut(s)	162, 588
AclWI	GGATC	1 cut(s)	431
AcsI	RAATTY	3 cut(s)	398, 726, 764
AfaI	GTAC	4 cut(s)	35, 276, 595, 623
AflII	CTTAAG	1 cut(s)	617
AgsI	TTSAA	6 cut(s)	31, 58, 140, 372, 461, 857
AjnI	CCWGG	1 cut(s)	439
AleI	CACNNNNGTG	1 cut(s)	521
AluBI	AGCT	5 cut(s)	197, 214, 296, 665, 860
AluI	AGCT	5 cut(s)	197, 214, 296, 665, 860
AlwI	GGATC	1 cut(s)	431
AoxI	GGCC	2 cut(s)	322, 677
ApeKI	GCWGC	2 cut(s)	95, 266
ApoI	RAATTY	3 cut(s)	398, 726, 764
AspLEI	GCGC	1 cut(s)	260
AspS9I	GGNCC	2 cut(s)	554, 677
AsuHPI	GGTGA	1 cut(s)	463
AvaII	GGWCC	1 cut(s)	554
BanII	GRGCYC	1 cut(s)	245
BbvI	GCAGC	2 cut(s)	107, 278
BccI	CCATC	3 cut(s)	544, 688, 700
BceAI	ACGGC	2 cut(s)	52, 782
BciT130I	CCWGG	1 cut(s)	441
BclI	TGATCA	1 cut(s)	301
BfmI	CTRYAG	1 cut(s)	640
BfrI	CTTAAG	1 cut(s)	617
BfuAI	ACCTGC	2 cut(s)	439, 841
BisI	GCNGC	2 cut(s)	96, 267
BlsI	GCNGC	2 cut(s)	97, 268
BmcAI	AGTACT	1 cut(s)	623
Bme1390I	CCNGG	1 cut(s)	441
Bme18I	GGWCC	1 cut(s)	554
BmgT120I	GGNCC	2 cut(s)	554, 677
BmiI	GGNNCC	3 cut(s)	242, 555, 678
BmrFI	CCNGG	1 cut(s)	441
BmsI	GCATC	3 cut(s)	123, 667, 792
BpmI	CTGGAG	1 cut(s)	219
BsaJI	CCNNGG	1 cut(s)	47
BsaWI	WCCGGW	1 cut(s)	862
BsaXI	ACNNNNNCTCC	2 cut(s)	435, 465
BseBI	CCWGG	1 cut(s)	441
BseDI	CCNNGG	1 cut(s)	47
BseGI	GGATG	4 cut(s)	10, 114, 555, 658
BseXI	GCAGC	2 cut(s)	107, 278
BseYI	CCCAGC	1 cut(s)	193
Bsh1285I	CGRYCG	1 cut(s)	592
BshFI	GGCC	2 cut(s)	324, 679
BsiEI	CGRYCG	1 cut(s)	592
BsiSI	CCGG	1 cut(s)	863
BslFI	GGGAC	1 cut(s)	567
BsmFI	GGGAC	1 cut(s)	567
BsnI	GGCC	2 cut(s)	324, 679
Bsp1286I	GDGCHC	1 cut(s)	245
Bsp143I	GATC	3 cut(s)	301, 436, 633
BspACI	CCGC	2 cut(s)	162, 588
BspANI	GGCC	2 cut(s)	324, 679
BspLI	GGNNCC	3 cut(s)	242, 555, 678
BspMAI	CTGCAG	1 cut(s)	644
BspMI	ACCTGC	2 cut(s)	439, 841
BspPI	GGATC	1 cut(s)	431
BspTI	CTTAAG	1 cut(s)	617
BssECI	CCNNGG	1 cut(s)	47
BssMI	GATC	3 cut(s)	301, 436, 633
Bst2UI	CCWGG	1 cut(s)	441
BstAFI	CTTAAG	1 cut(s)	617
BstC8I	GCNNGC	3 cut(s)	41, 112, 528
BstDEI	CTNAG	1 cut(s)	351
BstDSI	CCRYGG	1 cut(s)	47
BstF5I	GGATG	4 cut(s)	10, 114, 555, 658
BstHHI	GCGC	1 cut(s)	260
BstKTI	GATC	3 cut(s)	304, 439, 636
BstMBI	GATC	3 cut(s)	301, 436, 633
BstMCI	CGRYCG	1 cut(s)	592
BstMWI	GCNNNNNNNGC	3 cut(s)	266, 655, 811
BstNI	CCWGG	1 cut(s)	441
BstNSI	RCATGY	1 cut(s)	114
BstSCI	CCNGG	1 cut(s)	439
BstSFI	CTRYAG	1 cut(s)	640
BstV1I	GCAGC	2 cut(s)	107, 278
BsuRI	GGCC	2 cut(s)	324, 679
BtgI	CCRYGG	1 cut(s)	47
BtsCI	GGATG	4 cut(s)	10, 114, 555, 658
BveI	ACCTGC	2 cut(s)	439, 841
Cac8I	GCNNGC	3 cut(s)	41, 112, 528
CfoI	GCGC	1 cut(s)	260
Cfr13I	GGNCC	2 cut(s)	554, 677
Csp6I	GTAC	4 cut(s)	34, 275, 594, 622
CviAII	CATG	5 cut(s)	111, 261, 305, 475, 769
CviQI	GTAC	4 cut(s)	34, 275, 594, 622
DdeI	CTNAG	1 cut(s)	351
DpnI	GATC	3 cut(s)	303, 438, 635
DpnII	GATC	3 cut(s)	301, 436, 633
Eco147I	AGGCCT	1 cut(s)	324
Eco24I	GRGCYC	1 cut(s)	245
Eco47I	GGWCC	1 cut(s)	554
EcoRI	GAATTC	1 cut(s)	764
EcoRII	CCWGG	1 cut(s)	439
EcoT22I	ATGCAT	1 cut(s)	116
EcoT38I	GRGCYC	1 cut(s)	245
FaeI	CATG	5 cut(s)	114, 264, 308, 478, 772
FalI	AAGNNNNNCTT	2 cut(s)	309, 341
FaqI	GGGAC	1 cut(s)	567
FatI	CATG	5 cut(s)	110, 260, 304, 474, 768
FauI	CCCGC	1 cut(s)	155
FbaI	TGATCA	1 cut(s)	301
Fnu4HI	GCNGC	2 cut(s)	96, 267
FokI	GGATG	4 cut(s)	17, 101, 562, 645
FriOI	GRGCYC	1 cut(s)	245
Fsp4HI	GCNGC	2 cut(s)	96, 267
FspI	TGCGCA	1 cut(s)	259
GlaI	GCGC	1 cut(s)	259
GluI	GCNGC	2 cut(s)	96, 267
GsaI	CCCAGC	1 cut(s)	197
GsuI	CTGGAG	1 cut(s)	219
HaeIII	GGCC	2 cut(s)	324, 679
HapII	CCGG	1 cut(s)	863
HhaI	GCGC	1 cut(s)	260
Hin1II	CATG	5 cut(s)	114, 264, 308, 478, 772
Hin6I	GCGC	1 cut(s)	258
HinP1I	GCGC	1 cut(s)	258
HincII	GTYRAC	1 cut(s)	508
HindII	GTYRAC	1 cut(s)	508
HindIII	AAGCTT	1 cut(s)	294
HinfI	GANTC	1 cut(s)	748
HpaII	CCGG	1 cut(s)	863
HphI	GGTGA	1 cut(s)	463
Hpy166II	GTNNAC	1 cut(s)	508
Hpy188I	TCNGA	3 cut(s)	131, 436, 724
Hpy188III	TCNNGA	2 cut(s)	608, 906
Hpy8I	GTNNAC	1 cut(s)	508
HpyAV	CCTTC	3 cut(s)	37, 335, 623
HpyCH4IV	ACGT	1 cut(s)	251
HpyCH4V	TGCA	7 cut(s)	114, 341, 530, 642, 658, 738, 850
HpyF10VI	GCNNNNNNNGC	3 cut(s)	266, 655, 811
HpyF3I	CTNAG	1 cut(s)	351
HpySE526I	ACGT	1 cut(s)	251
Hsp92II	CATG	5 cut(s)	114, 264, 308, 478, 772
HspAI	GCGC	1 cut(s)	258
Ksp22I	TGATCA	1 cut(s)	301
Kzo9I	GATC	3 cut(s)	301, 436, 633
LmnI	GCTCC	2 cut(s)	240, 865
Lsp1109I	GCAGC	2 cut(s)	107, 278
LweI	GCATC	3 cut(s)	123, 667, 792
MaeII	ACGT	1 cut(s)	251
MaeIII	GTNAC	2 cut(s)	463, 570
MalI	GATC	3 cut(s)	303, 438, 635
MboI	GATC	3 cut(s)	301, 436, 633
MboII	GAAGA	1 cut(s)	23
MhlI	GDGCHC	1 cut(s)	245
MluCI	AATT	5 cut(s)	357, 398, 411, 726, 764
MmeI	TCCRAC	2 cut(s)	272, 900
MnlI	CCTC	4 cut(s)	54, 255, 415, 496
Mph1103I	ATGCAT	1 cut(s)	116
MseI	TTAA	4 cut(s)	410, 540, 618, 885
MslI	CAYNNNNRTG	1 cut(s)	521
MspA1I	CMGCKG	1 cut(s)	197
MspCI	CTTAAG	1 cut(s)	617
MspI	CCGG	1 cut(s)	863
MspR9I	CCNGG	1 cut(s)	441
MvaI	CCWGG	1 cut(s)	441
MwoI	GCNNNNNNNGC	3 cut(s)	266, 655, 811
NdeII	GATC	3 cut(s)	301, 436, 633
NlaIII	CATG	5 cut(s)	114, 264, 308, 478, 772
NlaIV	GGNNCC	3 cut(s)	242, 555, 678
NmuCI	GTSAC	2 cut(s)	463, 570
NsbI	TGCGCA	1 cut(s)	259
NsiI	ATGCAT	1 cut(s)	116
NspI	RCATGY	1 cut(s)	114
OliI	CACNNNNGTG	1 cut(s)	521
PaeI	GCATGC	1 cut(s)	114
PaqCI	CACCTGC	1 cut(s)	439
PceI	AGGCCT	1 cut(s)	324
PfeI	GAWTC	1 cut(s)	748
PfoI	TCCNGGA	1 cut(s)	439
PkrI	GCNGC	2 cut(s)	97, 268
Psp6I	CCWGG	1 cut(s)	439
PspFI	CCCAGC	1 cut(s)	193
PspGI	CCWGG	1 cut(s)	439
PspN4I	GGNNCC	3 cut(s)	242, 555, 678
PspPI	GGNCC	2 cut(s)	554, 677
PstI	CTGCAG	1 cut(s)	644
PvuII	CAGCTG	1 cut(s)	197
RsaI	GTAC	4 cut(s)	35, 276, 595, 623
RsaNI	GTAC	4 cut(s)	34, 275, 594, 622
RseI	CAYNNNNRTG	1 cut(s)	521
SaqAI	TTAA	4 cut(s)	410, 540, 618, 885
SatI	GCNGC	2 cut(s)	96, 267
Sau3AI	GATC	3 cut(s)	301, 436, 633
Sau96I	GGNCC	2 cut(s)	554, 677
ScaI	AGTACT	1 cut(s)	623
ScrFI	CCNGG	1 cut(s)	441
SduI	GDGCHC	1 cut(s)	245
SfaNI	GCATC	3 cut(s)	123, 667, 792
SfcI	CTRYAG	1 cut(s)	640
SinI	GGWCC	1 cut(s)	554
SmiMI	CAYNNNNRTG	1 cut(s)	521
SmlI	CTYRAG	1 cut(s)	617
SmoI	CTYRAG	1 cut(s)	617
SphI	GCATGC	1 cut(s)	114
Sse9I	AATT	5 cut(s)	357, 398, 411, 726, 764
SseBI	AGGCCT	1 cut(s)	324
SsiI	CCGC	2 cut(s)	162, 588
StuI	AGGCCT	1 cut(s)	324
StyD4I	CCNGG	1 cut(s)	439
TaiI	ACGT	1 cut(s)	254
TaqI	TCGA	3 cut(s)	106, 636, 695
TasI	AATT	5 cut(s)	357, 398, 411, 726, 764
TatI	WGTACW	1 cut(s)	621
TfiI	GAWTC	1 cut(s)	748
Tru1I	TTAA	4 cut(s)	410, 540, 618, 885
Tru9I	TTAA	4 cut(s)	410, 540, 618, 885
TseFI	GTSAC	2 cut(s)	463, 570
TseI	GCWGC	2 cut(s)	95, 266
Tsp45I	GTSAC	2 cut(s)	463, 570
TspDTI	ATGAA	3 cut(s)	719, 757, 857
TspGWI	ACGGA	1 cut(s)	36
Vha464I	CTTAAG	1 cut(s)	617
VpaK11BI	GGWCC	1 cut(s)	554
XapI	RAATTY	3 cut(s)	398, 726, 764
XceI	RCATGY	1 cut(s)	114
XcmI	CCANNNNNNNNNTGG	1 cut(s)	823
ZrmI	AGTACT	1 cut(s)	623
Zsp2I	ATGCAT	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.