Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0006342

Physical Location & Seq

Genomic Coordinates Reverse (-)

7594492 .. 7596869

Gene Structure 2378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g10960.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGATGTTGGAGAGACAAAATGTTCCTACGGCAAGCCTCCGTGGATATTCAAAGGCAGCGCGTTGTATCAACTCCATCTTGTCAAAGCAGCAACTGTCCGAGCATGCATTCCGAAAGATTTCAGATTAGTTGAAGCATTTGGGTATACTCTTGGCGGCTTCTTTCTTGCCAACTATGATGACAGTCCAGCAGGAGTCTTTGATGAGCTCGTTGTGATTGCTGGACTTGTATGGAGCCCTCCAACATCTTGCGCCTGGGCAGCTAAGGTGCTTGTGAATAGTGATGAAGCTTGTAAACATGGACGAAAGGAAGTAGGGCTTCCAAGTCATGTTGCGAGGTTTTCAAAGAGGATTACAGCAGTGTCAAGGCAACCAAAGAACAAAAATATGGGATTTCTTAATGTCAATGGTAGCAGTGCTGCTTTCTGTGATCCAAAAGATTGTATGGAAGTTCAAGTGACTGAAATCAAGGCTTCGTCAGTTAAAGATTCCTGTAATGTCAACCTCACCACTTTCGTGCCTGAATCGAGCGGTGAGTGGAGGGGGCCAGCGATCAAAATTTCTCTTCCAAGTTTTAGCGGCGGCACAGAATATTATCCCAACCTTCTCAAGTACTCTTGCCGGATTGAGTGCAGGGTACAAGCAGTGCATCCGGCAAAAGTATCAGGACCATCTCCGATGCCAAAGAATGAAACAGAAAAATCTTCAGAAATCCATACCAGCAATACAAACAACCACGCAACCGAAGAATTTGTGGATAAAGGCAACCTCCTCTGGGAATCTGTGATGTTATCCAAGCCCGTATTGGCATTGCAGTTCAGTTGTATGAAAATGCAGGTTGAAGCTCCAGTTGTAGTTTTCAACTCCAATAACTCTTTAACAACCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

297

Amino Acids

32.34

Weight (kDa)

8.27

Isoelectric Point (pI)

47.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006342)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28100 AT1G28100 AT1G28100 AT1G28100 AT1G28100 AT1G28100
fragaria_vesca	FvH4_4g22830 FvH4_4g22830
malus_domestica	MD13G1129300.v1.1 MD16G1129300.v1.1
prunus_persica	Prupe.1G217100_v2.0.a1 Prupe.1G217100_v2.0.a1 Prupe.1G217100_v2.0.a1
pyrus_communis	pycom13g11230 pycom16g10960
rosa_chinensis	RchiOBHm_Chr4g0429061
rosa_laevigata	RLG00000007100
rosa_multiflora	Rmu_sc0008629.1_g000020
rosa_roxburghii	Rroxscaffold_5G00370700
rosa_rugosa	Rorug04G0232400 Rorug04G0232500 Rorug04G0232600
rosa_samantha	Rh4AG288400 Rh4BG294600 Rh4CG310100 Rh4DG291500
rosa_wichuraiana	Rw4G025000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	826
AccBSI	CCGCTC	1 cut(s)	531
AccI	GTMKAC	1 cut(s)	146
AccII	CGCG	1 cut(s)	62
AciI	CCGC	4 cut(s)	156, 531, 579, 582
AclWI	GGATC	1 cut(s)	425
AcsI	RAATTY	2 cut(s)	558, 749
AcuI	CTGAAG	1 cut(s)	690
AfaI	GTAC	2 cut(s)	614, 639
AfiI	CCNNNNNNNGG	1 cut(s)	775
AgsI	TTSAA	6 cut(s)	52, 134, 345, 455, 842, 862
AjnI	CCWGG	1 cut(s)	254
AleI	CACNNNNGTG	1 cut(s)	515
AluBI	AGCT	4 cut(s)	208, 263, 290, 845
AluI	AGCT	4 cut(s)	208, 263, 290, 845
Alw21I	GWGCWC	1 cut(s)	210
Alw26I	GTCTC	1 cut(s)	8
AlwI	GGATC	1 cut(s)	425
AlwNI	CAGNNNCTG	1 cut(s)	95
AoxI	GGCC	1 cut(s)	545
ApeKI	GCWGC	4 cut(s)	57, 89, 260, 419
ApoI	RAATTY	2 cut(s)	558, 749
Asp700I	GAANNNNTTC	1 cut(s)	119
AspLEI	GCGC	2 cut(s)	62, 254
AspS9I	GGNCC	2 cut(s)	545, 668
AsuHPI	GGTGA	2 cut(s)	499, 545
AvaII	GGWCC	1 cut(s)	668
BanII	GRGCYC	2 cut(s)	210, 239
Bbv12I	GWGCWC	1 cut(s)	210
BbvI	GCAGC	4 cut(s)	69, 101, 272, 406
BccI	CCATC	2 cut(s)	84, 679
BceAI	ACGGC	1 cut(s)	46
BciT130I	CCWGG	1 cut(s)	256
BcoDI	GTCTC	1 cut(s)	8
BfuAI	ACCTGC	1 cut(s)	826
BisI	GCNGC	7 cut(s)	58, 90, 157, 261, 420, 580, 583
BlsI	GCNGC	7 cut(s)	59, 91, 158, 262, 421, 581, 584
BmcAI	AGTACT	1 cut(s)	614
Bme1390I	CCNGG	1 cut(s)	256
Bme18I	GGWCC	1 cut(s)	668
BmgT120I	GGNCC	2 cut(s)	545, 668
BmiI	GGNNCC	2 cut(s)	236, 546
BmrFI	CCNGG	1 cut(s)	256
BmsI	GCATC	2 cut(s)	658, 669
BpmI	CTGGAG	1 cut(s)	831
Bpu10I	CCTNAGC	1 cut(s)	264
BpuEI	CTTGAG	1 cut(s)	593
BsaJI	CCNNGG	2 cut(s)	41, 255
Bsc4I	CCNNNNNNNGG	1 cut(s)	775
Bse1I	ACTGG	1 cut(s)	848
Bse3DI	GCAATG	1 cut(s)	809
BseBI	CCWGG	1 cut(s)	256
BseDI	CCNNGG	2 cut(s)	41, 255
BseGI	GGATG	2 cut(s)	10, 649
BseLI	CCNNNNNNNGG	1 cut(s)	775
BseMI	GCAATG	1 cut(s)	809
BseNI	ACTGG	1 cut(s)	848
BseRI	GAGGAG	1 cut(s)	761
BseXI	GCAGC	4 cut(s)	69, 101, 272, 406
BsgI	GTGCAG	1 cut(s)	652
Bsh1236I	CGCG	1 cut(s)	62
BshFI	GGCC	1 cut(s)	547
BsiHKAI	GWGCWC	1 cut(s)	210
BsiSI	CCGG	2 cut(s)	622, 653
BslI	CCNNNNNNNGG	1 cut(s)	775
BsmAI	GTCTC	1 cut(s)	8
BsmI	GAATGC	1 cut(s)	108
BsnI	GGCC	1 cut(s)	547
Bsp1286I	GDGCHC	2 cut(s)	210, 239
Bsp143I	GATC	2 cut(s)	430, 552
BspACI	CCGC	4 cut(s)	156, 531, 579, 582
BspANI	GGCC	1 cut(s)	547
BspFNI	CGCG	1 cut(s)	62
BspLI	GGNNCC	2 cut(s)	236, 546
BspMI	ACCTGC	1 cut(s)	826
BspPI	GGATC	1 cut(s)	425
BsrBI	CCGCTC	1 cut(s)	531
BsrDI	GCAATG	1 cut(s)	809
BsrI	ACTGG	1 cut(s)	848
BssECI	CCNNGG	2 cut(s)	41, 255
BssMI	GATC	2 cut(s)	430, 552
BssNAI	GTATAC	1 cut(s)	147
Bst1107I	GTATAC	1 cut(s)	147
Bst2UI	CCWGG	1 cut(s)	256
Bst4CI	ACNGT	2 cut(s)	97, 185
Bst6I	CTCTTC	1 cut(s)	570
BstC8I	GCNNGC	3 cut(s)	35, 106, 549
BstDEI	CTNAG	1 cut(s)	264
BstDSI	CCRYGG	1 cut(s)	41
BstF5I	GGATG	2 cut(s)	10, 649
BstFNI	CGCG	1 cut(s)	62
BstHHI	GCGC	2 cut(s)	62, 254
BstKTI	GATC	2 cut(s)	433, 555
BstMAI	GTCTC	1 cut(s)	8
BstMBI	GATC	2 cut(s)	430, 552
BstMWI	GCNNNNNNNGC	1 cut(s)	260
BstNI	CCWGG	1 cut(s)	256
BstNSI	RCATGY	1 cut(s)	108
BstSCI	CCNGG	1 cut(s)	254
BstUI	CGCG	1 cut(s)	62
BstV1I	GCAGC	4 cut(s)	69, 101, 272, 406
BstZ17I	GTATAC	1 cut(s)	147
BsuRI	GGCC	1 cut(s)	547
BtgI	CCRYGG	1 cut(s)	41
BtsCI	GGATG	2 cut(s)	10, 649
BtsI	GCAGTG	3 cut(s)	366, 421, 651
BtsIMutI	CAGTG	3 cut(s)	366, 421, 651
BveI	ACCTGC	1 cut(s)	826
Cac8I	GCNNGC	3 cut(s)	35, 106, 549
CaiI	CAGNNNCTG	1 cut(s)	95
CfoI	GCGC	2 cut(s)	62, 254
Cfr13I	GGNCC	2 cut(s)	545, 668
Csp6I	GTAC	2 cut(s)	613, 638
CviAII	CATG	3 cut(s)	105, 299, 329
CviQI	GTAC	2 cut(s)	613, 638
DdeI	CTNAG	1 cut(s)	264
DpnI	GATC	2 cut(s)	432, 554
DpnII	GATC	2 cut(s)	430, 552
Eam1104I	CTCTTC	1 cut(s)	570
EarI	CTCTTC	1 cut(s)	570
Ecl136II	GAGCTC	1 cut(s)	208
Eco24I	GRGCYC	2 cut(s)	210, 239
Eco47I	GGWCC	1 cut(s)	668
Eco53kI	GAGCTC	1 cut(s)	208
Eco57I	CTGAAG	1 cut(s)	690
EcoICRI	GAGCTC	1 cut(s)	208
EcoRII	CCWGG	1 cut(s)	254
EcoT22I	ATGCAT	1 cut(s)	110
EcoT38I	GRGCYC	2 cut(s)	210, 239
FaeI	CATG	3 cut(s)	108, 302, 332
FalI	AAGNNNNNCTT	2 cut(s)	303, 335
FatI	CATG	3 cut(s)	104, 298, 328
FblI	GTMKAC	1 cut(s)	146
Fnu4HI	GCNGC	7 cut(s)	58, 90, 157, 261, 420, 580, 583
FokI	GGATG	2 cut(s)	17, 636
FriOI	GRGCYC	2 cut(s)	210, 239
Fsp4HI	GCNGC	7 cut(s)	58, 90, 157, 261, 420, 580, 583
GlaI	GCGC	2 cut(s)	61, 253
GluI	GCNGC	7 cut(s)	58, 90, 157, 261, 420, 580, 583
GsuI	CTGGAG	1 cut(s)	831
HaeIII	GGCC	1 cut(s)	547
HapII	CCGG	2 cut(s)	622, 653
HhaI	GCGC	2 cut(s)	62, 254
Hin1II	CATG	3 cut(s)	108, 302, 332
Hin6I	GCGC	2 cut(s)	60, 252
HinP1I	GCGC	2 cut(s)	60, 252
HincII	GTYRAC	1 cut(s)	502
HindII	GTYRAC	1 cut(s)	502
HindIII	AAGCTT	1 cut(s)	288
HinfI	GANTC	4 cut(s)	195, 488, 524, 779
HpaII	CCGG	2 cut(s)	622, 653
HphI	GGTGA	2 cut(s)	499, 545
Hpy166II	GTNNAC	3 cut(s)	147, 296, 502
Hpy188I	TCNGA	5 cut(s)	101, 114, 125, 678, 709
Hpy188III	TCNNGA	1 cut(s)	666
Hpy8I	GTNNAC	3 cut(s)	147, 296, 502
HpyAV	CCTTC	1 cut(s)	614
HpyCH4III	ACNGT	2 cut(s)	97, 185
HpyCH4V	TGCA	5 cut(s)	108, 633, 649, 814, 835
HpyF10VI	GCNNNNNNNGC	1 cut(s)	260
HpyF3I	CTNAG	1 cut(s)	264
Hsp92II	CATG	3 cut(s)	108, 302, 332
HspAI	GCGC	2 cut(s)	60, 252
Kzo9I	GATC	2 cut(s)	430, 552
LmnI	GCTCC	2 cut(s)	234, 850
Lsp1109I	GCAGC	4 cut(s)	69, 101, 272, 406
LweI	GCATC	2 cut(s)	658, 669
MaeIII	GTNAC	1 cut(s)	457
MalI	GATC	2 cut(s)	432, 554
MbiI	CCGCTC	1 cut(s)	531
MboI	GATC	2 cut(s)	430, 552
MboII	GAAGA	3 cut(s)	557, 696, 758
MhlI	GDGCHC	2 cut(s)	210, 239
MluCI	AATT	2 cut(s)	558, 749
MlyI	GAGTC	1 cut(s)	204
MmeI	TCCRAC	1 cut(s)	266
MnlI	CCTC	8 cut(s)	48, 249, 330, 342, 515, 534, 779, 782
Mph1103I	ATGCAT	1 cut(s)	110
MroXI	GAANNNNTTC	1 cut(s)	119
MseI	TTAA	3 cut(s)	399, 483, 878
MslI	CAYNNNNRTG	1 cut(s)	515
MspI	CCGG	2 cut(s)	622, 653
MspR9I	CCNGG	1 cut(s)	256
Mva1269I	GAATGC	1 cut(s)	108
MvaI	CCWGG	1 cut(s)	256
MvnI	CGCG	1 cut(s)	62
MwoI	GCNNNNNNNGC	1 cut(s)	260
NdeII	GATC	2 cut(s)	430, 552
NlaIII	CATG	3 cut(s)	108, 302, 332
NlaIV	GGNNCC	2 cut(s)	236, 546
NmuCI	GTSAC	1 cut(s)	457
NsiI	ATGCAT	1 cut(s)	110
NspI	RCATGY	1 cut(s)	108
OliI	CACNNNNGTG	1 cut(s)	515
PaeI	GCATGC	1 cut(s)	108
PctI	GAATGC	1 cut(s)	108
PdmI	GAANNNNTTC	1 cut(s)	119
PfeI	GAWTC	3 cut(s)	488, 524, 779
PkrI	GCNGC	7 cut(s)	59, 91, 158, 262, 421, 581, 584
PleI	GAGTC	1 cut(s)	203
PpsI	GAGTC	1 cut(s)	203
Psp124BI	GAGCTC	1 cut(s)	210
Psp6I	CCWGG	1 cut(s)	254
PspGI	CCWGG	1 cut(s)	254
PspN4I	GGNNCC	2 cut(s)	236, 546
PspPI	GGNCC	2 cut(s)	545, 668
PstNI	CAGNNNCTG	1 cut(s)	95
RsaI	GTAC	2 cut(s)	614, 639
RsaNI	GTAC	2 cut(s)	613, 638
RseI	CAYNNNNRTG	1 cut(s)	515
SacI	GAGCTC	1 cut(s)	210
SaqAI	TTAA	3 cut(s)	399, 483, 878
SatI	GCNGC	7 cut(s)	58, 90, 157, 261, 420, 580, 583
Sau3AI	GATC	2 cut(s)	430, 552
Sau96I	GGNCC	2 cut(s)	545, 668
ScaI	AGTACT	1 cut(s)	614
SchI	GAGTC	1 cut(s)	204
ScrFI	CCNGG	1 cut(s)	256
SduI	GDGCHC	2 cut(s)	210, 239
SfaNI	GCATC	2 cut(s)	658, 669
SinI	GGWCC	1 cut(s)	668
SmiMI	CAYNNNNRTG	1 cut(s)	515
SmlI	CTYRAG	1 cut(s)	608
SmoI	CTYRAG	1 cut(s)	608
SphI	GCATGC	1 cut(s)	108
Sse9I	AATT	2 cut(s)	558, 749
SsiI	CCGC	4 cut(s)	156, 531, 579, 582
SspI	AATATT	1 cut(s)	593
SstI	GAGCTC	1 cut(s)	210
StyD4I	CCNGG	1 cut(s)	254
TaaI	ACNGT	2 cut(s)	97, 185
TaqI	TCGA	1 cut(s)	527
TasI	AATT	2 cut(s)	558, 749
TatI	WGTACW	1 cut(s)	612
TauI	GCSGC	3 cut(s)	159, 582, 585
TfiI	GAWTC	3 cut(s)	488, 524, 779
Tru1I	TTAA	3 cut(s)	399, 483, 878
Tru9I	TTAA	3 cut(s)	399, 483, 878
TscAI	CASTG	3 cut(s)	366, 421, 651
TseFI	GTSAC	1 cut(s)	457
TseI	GCWGC	4 cut(s)	57, 89, 260, 419
Tsp45I	GTSAC	1 cut(s)	457
TspDTI	ATGAA	3 cut(s)	300, 705, 842
TspGWI	ACGGA	1 cut(s)	30
TspRI	CASTG	3 cut(s)	366, 421, 651
VpaK11BI	GGWCC	1 cut(s)	668
XapI	RAATTY	2 cut(s)	558, 749
XceI	RCATGY	1 cut(s)	108
XcmI	CCANNNNNNNNNTGG	1 cut(s)	802
XmiI	GTMKAC	1 cut(s)	146
XmnI	GAANNNNTTC	1 cut(s)	119
ZrmI	AGTACT	1 cut(s)	614
Zsp2I	ATGCAT	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.