Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0006342

Physical Location & Seq

Genomic Coordinates Forward (+)

51253124 .. 51255720

Gene Structure 2597 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG291500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGGCGAAAGTCCCCTCTTGCAGGAAGTAGGCCTTCCAAGTCAAGTTGCAAGCTTTTCTAAGAGAATTACAGCAGTTTCAAGGAAACCAAAGACCAAACAAAGTGAATTTCTAAACTTAATTGGTATGAAGGGTGGTTTCTCTGATCCAGGAGAGCAGGTGAACGTTCAAGTGACTGAAATCATGGGTCAAGCCTCAAAAGATACCTGTAATGTCAACCTTACCACTTTCGTGCCTGCATTGGACATTAACAAGTGGATGGGACCAGCAATCAAAATGTCACTTCCAAGTTTTAGCGGTCGTACAGAGTATTATCCTGACCTTCTTAAGTACTCTTGCCAGATCGACTGCAGGGTGCGAGTAGTGCATCCAGCTAAAGTATCGGGGCCATCTCCTGTGCCATCGAATGAGAACGAGAACAAACAATGTTCAGAAATTCATAGTTGCAATACGCAGAATCAAGCAACTAAAGAATTCATGGACAATGAGCAGAACCTTACCAGAGCCGTGATGCTATCAAAGCCCATTTTGGCATTGGAGTTCAGTTCTATGAAAATGCAGGTTGAAGCTCCGGTTGTAGTTTCCAACTACTTTAAGAACTCTTTAGCAACCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

205

Amino Acids

22.58

Weight (kDa)

8.24

Isoelectric Point (pI)

53.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006342)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28100 AT1G28100 AT1G28100 AT1G28100 AT1G28100 AT1G28100
fragaria_vesca	FvH4_4g22830 FvH4_4g22830
malus_domestica	MD13G1129300.v1.1 MD16G1129300.v1.1
prunus_persica	Prupe.1G217100_v2.0.a1 Prupe.1G217100_v2.0.a1 Prupe.1G217100_v2.0.a1
pyrus_communis	pycom13g11230 pycom16g10960
rosa_chinensis	RchiOBHm_Chr4g0429061
rosa_laevigata	RLG00000007100
rosa_multiflora	Rmu_sc0008629.1_g000020
rosa_roxburghii	Rroxscaffold_5G00370700
rosa_rugosa	Rorug04G0232400 Rorug04G0232500 Rorug04G0232600
rosa_samantha	Rh4AG288400 Rh4BG294600 Rh4CG310100 Rh4DG291500
rosa_wichuraiana	Rw4G025000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	148
Acc36I	ACCTGC	2 cut(s)	148, 550
AciI	CCGC	1 cut(s)	297
AclI	AACGTT	1 cut(s)	165
AclWI	GGATC	1 cut(s)	140
AcsI	RAATTY	3 cut(s)	107, 435, 473
AfaI	GTAC	2 cut(s)	304, 332
AfiI	CCNNNNNNNGG	1 cut(s)	22
AflII	CTTAAG	1 cut(s)	326
AgsI	TTSAA	3 cut(s)	81, 170, 566
AjnI	CCWGG	1 cut(s)	148
AleI	CACNNNNGTG	1 cut(s)	230
AluBI	AGCT	3 cut(s)	54, 374, 569
AluI	AGCT	3 cut(s)	54, 374, 569
AlwI	GGATC	1 cut(s)	140
AoxI	GGCC	2 cut(s)	31, 386
ApoI	RAATTY	3 cut(s)	107, 435, 473
AspS9I	GGNCC	2 cut(s)	263, 386
AsuHPI	GGTGA	1 cut(s)	172
AvaII	GGWCC	1 cut(s)	263
BccI	CCATC	3 cut(s)	253, 397, 409
BceAI	ACGGC	1 cut(s)	491
BciT130I	CCWGG	1 cut(s)	150
BfmI	CTRYAG	1 cut(s)	349
BfrI	CTTAAG	1 cut(s)	326
BfuAI	ACCTGC	2 cut(s)	148, 550
BmcAI	AGTACT	1 cut(s)	332
Bme1390I	CCNGG	1 cut(s)	150
Bme18I	GGWCC	1 cut(s)	263
BmgT120I	GGNCC	2 cut(s)	263, 386
BmiI	GGNNCC	2 cut(s)	264, 387
BmrFI	CCNGG	1 cut(s)	150
BmsI	GCATC	2 cut(s)	376, 501
BsaWI	WCCGGW	1 cut(s)	571
BsaXI	ACNNNNNCTCC	2 cut(s)	144, 174
Bsc4I	CCNNNNNNNGG	1 cut(s)	22
BseBI	CCWGG	1 cut(s)	150
BseGI	GGATG	2 cut(s)	264, 367
BseLI	CCNNNNNNNGG	1 cut(s)	22
Bsh1285I	CGRYCG	1 cut(s)	301
BshFI	GGCC	2 cut(s)	33, 388
BsiEI	CGRYCG	1 cut(s)	301
BsiSI	CCGG	1 cut(s)	572
BslFI	GGGAC	1 cut(s)	276
BslI	CCNNNNNNNGG	1 cut(s)	22
BsmFI	GGGAC	1 cut(s)	276
BsnI	GGCC	2 cut(s)	33, 388
Bsp143I	GATC	2 cut(s)	145, 342
BspACI	CCGC	1 cut(s)	297
BspANI	GGCC	2 cut(s)	33, 388
BspLI	GGNNCC	2 cut(s)	264, 387
BspMAI	CTGCAG	1 cut(s)	353
BspMI	ACCTGC	2 cut(s)	148, 550
BspPI	GGATC	1 cut(s)	140
BspTI	CTTAAG	1 cut(s)	326
BssMI	GATC	2 cut(s)	145, 342
Bst2UI	CCWGG	1 cut(s)	150
BstAFI	CTTAAG	1 cut(s)	326
BstC8I	GCNNGC	2 cut(s)	52, 237
BstDEI	CTNAG	1 cut(s)	60
BstENI	CCTNNNNNAGG	1 cut(s)	20
BstF5I	GGATG	2 cut(s)	264, 367
BstKTI	GATC	2 cut(s)	148, 345
BstMBI	GATC	2 cut(s)	145, 342
BstMCI	CGRYCG	1 cut(s)	301
BstMWI	GCNNNNNNNGC	2 cut(s)	364, 520
BstNI	CCWGG	1 cut(s)	150
BstSCI	CCNGG	1 cut(s)	148
BstSFI	CTRYAG	1 cut(s)	349
BsuRI	GGCC	2 cut(s)	33, 388
BtsCI	GGATG	2 cut(s)	264, 367
BveI	ACCTGC	2 cut(s)	148, 550
Cac8I	GCNNGC	2 cut(s)	52, 237
Cfr13I	GGNCC	2 cut(s)	263, 386
Csp6I	GTAC	2 cut(s)	303, 331
CviAII	CATG	2 cut(s)	184, 478
CviJI	RGCY	8 cut(s)	33, 54, 194, 374, 388, 506, 523, 569
CviKI_1	RGCY	8 cut(s)	33, 54, 194, 374, 388, 506, 523, 569
CviQI	GTAC	2 cut(s)	303, 331
DdeI	CTNAG	1 cut(s)	60
DpnI	GATC	2 cut(s)	147, 344
DpnII	GATC	2 cut(s)	145, 342
Eco147I	AGGCCT	1 cut(s)	33
Eco47I	GGWCC	1 cut(s)	263
EcoNI	CCTNNNNNAGG	1 cut(s)	20
EcoRI	GAATTC	1 cut(s)	473
EcoRII	CCWGG	1 cut(s)	148
FaeI	CATG	2 cut(s)	187, 481
FaiI	YATR	5 cut(s)	128, 185, 441, 479, 551
FalI	AAGNNNNNCTT	2 cut(s)	18, 50
FaqI	GGGAC	1 cut(s)	276
FatI	CATG	2 cut(s)	183, 477
FokI	GGATG	2 cut(s)	271, 354
HaeIII	GGCC	2 cut(s)	33, 388
HapII	CCGG	1 cut(s)	572
Hin1II	CATG	2 cut(s)	187, 481
HincII	GTYRAC	1 cut(s)	217
HindII	GTYRAC	1 cut(s)	217
HindIII	AAGCTT	1 cut(s)	52
HinfI	GANTC	1 cut(s)	457
HpaII	CCGG	1 cut(s)	572
HphI	GGTGA	1 cut(s)	172
Hpy166II	GTNNAC	2 cut(s)	163, 217
Hpy188I	TCNGA	2 cut(s)	145, 433
Hpy188III	TCNNGA	2 cut(s)	317, 615
Hpy8I	GTNNAC	2 cut(s)	163, 217
HpyAV	CCTTC	3 cut(s)	44, 124, 332
HpyCH4IV	ACGT	1 cut(s)	165
HpyCH4V	TGCA	7 cut(s)	22, 50, 239, 351, 367, 447, 559
HpyF10VI	GCNNNNNNNGC	2 cut(s)	364, 520
HpyF3I	CTNAG	1 cut(s)	60
HpySE526I	ACGT	1 cut(s)	165
Hsp92II	CATG	2 cut(s)	187, 481
Kzo9I	GATC	2 cut(s)	145, 342
LmnI	GCTCC	1 cut(s)	574
LweI	GCATC	2 cut(s)	376, 501
MaeII	ACGT	1 cut(s)	165
MaeIII	GTNAC	2 cut(s)	172, 279
MalI	GATC	2 cut(s)	147, 344
MboI	GATC	2 cut(s)	145, 342
MluCI	AATT	5 cut(s)	66, 107, 120, 435, 473
MmeI	TCCRAC	1 cut(s)	609
MnlI	CCTC	2 cut(s)	26, 205
MseI	TTAA	4 cut(s)	119, 249, 327, 594
MslI	CAYNNNNRTG	1 cut(s)	230
MspCI	CTTAAG	1 cut(s)	326
MspI	CCGG	1 cut(s)	572
MspR9I	CCNGG	1 cut(s)	150
MvaI	CCWGG	1 cut(s)	150
MwoI	GCNNNNNNNGC	2 cut(s)	364, 520
NdeII	GATC	2 cut(s)	145, 342
NlaIII	CATG	2 cut(s)	187, 481
NlaIV	GGNNCC	2 cut(s)	264, 387
NmuCI	GTSAC	2 cut(s)	172, 279
OliI	CACNNNNGTG	1 cut(s)	230
PaqCI	CACCTGC	1 cut(s)	148
PceI	AGGCCT	1 cut(s)	33
PfeI	GAWTC	1 cut(s)	457
PfoI	TCCNGGA	1 cut(s)	148
Psp1406I	AACGTT	1 cut(s)	165
Psp6I	CCWGG	1 cut(s)	148
PspGI	CCWGG	1 cut(s)	148
PspN4I	GGNNCC	2 cut(s)	264, 387
PspPI	GGNCC	2 cut(s)	263, 386
PstI	CTGCAG	1 cut(s)	353
RsaI	GTAC	2 cut(s)	304, 332
RsaNI	GTAC	2 cut(s)	303, 331
RseI	CAYNNNNRTG	1 cut(s)	230
SaqAI	TTAA	4 cut(s)	119, 249, 327, 594
Sau3AI	GATC	2 cut(s)	145, 342
Sau96I	GGNCC	2 cut(s)	263, 386
ScaI	AGTACT	1 cut(s)	332
ScrFI	CCNGG	1 cut(s)	150
SfaNI	GCATC	2 cut(s)	376, 501
SfcI	CTRYAG	1 cut(s)	349
SinI	GGWCC	1 cut(s)	263
SmiMI	CAYNNNNRTG	1 cut(s)	230
SmlI	CTYRAG	1 cut(s)	326
SmoI	CTYRAG	1 cut(s)	326
Sse9I	AATT	5 cut(s)	66, 107, 120, 435, 473
SseBI	AGGCCT	1 cut(s)	33
SsiI	CCGC	1 cut(s)	297
StuI	AGGCCT	1 cut(s)	33
StyD4I	CCNGG	1 cut(s)	148
TaiI	ACGT	1 cut(s)	168
TaqI	TCGA	2 cut(s)	345, 404
TasI	AATT	5 cut(s)	66, 107, 120, 435, 473
TatI	WGTACW	1 cut(s)	330
TfiI	GAWTC	1 cut(s)	457
Tru1I	TTAA	4 cut(s)	119, 249, 327, 594
Tru9I	TTAA	4 cut(s)	119, 249, 327, 594
TseFI	GTSAC	2 cut(s)	172, 279
Tsp45I	GTSAC	2 cut(s)	172, 279
TspDTI	ATGAA	4 cut(s)	143, 428, 466, 566
Vha464I	CTTAAG	1 cut(s)	326
VpaK11BI	GGWCC	1 cut(s)	263
XagI	CCTNNNNNAGG	1 cut(s)	20
XapI	RAATTY	3 cut(s)	107, 435, 473
XcmI	CCANNNNNNNNNTGG	1 cut(s)	532
ZrmI	AGTACT	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.