Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0006342

Physical Location & Seq

Genomic Coordinates Reverse (-)

39750176 .. 39751426

Gene Structure 1251 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0232400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGGCTGCTTTTCTGCACTTCCTTCTTCTTCTCTGCTCTTTCGCCTACAATTTCAACACATCTCAATCCAAACATACTCACCCACAACAAAAAGGTGCCATCTTTCACGTCACCAAAGATCTATCAACCCTCCAGTACATCACCCAGATCCACCACGGCTCTCCTCTCCAGCCCACCAACCTCGTCATCGATCTCGGCGGCCCTTTCCTCTGGCTCGGCTGCCCTTCCGATTCCGGGTCTTCATCTTCTAGAACTCTCATCTCTCATTGCTCAATCAAATGCTTATCAGCAAACCCAAACACCCAAAAAAGCAAGACCAGCAAGTGTGAGACTTTCCCAGAAAACAGAATCACTCAAATGGCCACACAAGGGGATTTGGCAGAAGACATCATAGCCCTTCCGTTCGTTGATGGGTCCAAAACAGAGCCCATCACCGCTGTTAATTCCTATTTTTTATTTTCCTGTGCACCCAAATTGCTTCTGAAAGGCCTAGCAACTGGGGCTAGAGGAATGTTAGGACTCGGAAGGAGTCGAGTTTCGGTGGCGTCCCAAATTGCTGCAGCATTTGGTTCCAAACCGCAGTTCATCCTCTGCCTGTCTTCATCAAACGGGGTCGTTTTACACGACAATGGGGAATATGGTTCTTATTTTGTCTCTGGAGTTTCAGGCTCACTCACATACACACCCCTGGTTACTAAACTTGACTCACCACATGAGTATTTCATCAACCTGAAGTCAATCAGAGTCAACGGGAAGCAATTGTCTCTGAATTACAAAGAGGGTCTTGGAGGGATTAAGCTAAGCACAGTTGTTCCCTACTCTACTTTGGAAAGCTCAGTCTATGCTGTATTTGTCAAAGCTTATGAGCAAGCTGCTGTGGCTATGAACATGACTAGGGTGGATTCTGTGGCACCATTTGGACTCTGTTTTGGATCCAAAAACATCGATGGCATTCGGGTTGGTTCAAGAGCGCCTGTTGTTGATTTGGGGCTGCAGAGTGAGATGGTGAAGTGGAGAATTCATGGTAGAAGCTCCATGGTTCAAGTGAGCGATGAAGTTATGTGTTTGGGGTTCTTGGATGGTGGTTTGGAGCAGAAGACTTCAATTGTGTTAGGGGGTCATCAATTGGAGGATACCCTGTTACATTTTGATTTGGGTGCTTCTATGCTAGGATTTAGTTCTTCCACGTTGATGGATCACAATACTTGCTCTGATCTGGGACTGGGTTTTGGGTTTAAAGATTCAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

416

Amino Acids

44.77

Weight (kDa)

7.6

Isoelectric Point (pI)

35.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Asp	PF00026	45 - 393	2.5e-06	Eukaryotic aspartyl protease
TAXi_N	PF14543	46 - 204	1.5e-31	Xylanase inhibitor N-terminal
TAXi_C	PF14541	239 - 393	6e-48	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006342)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28100 AT1G28100 AT1G28100 AT1G28100 AT1G28100 AT1G28100
fragaria_vesca	FvH4_4g22830 FvH4_4g22830
malus_domestica	MD13G1129300.v1.1 MD16G1129300.v1.1
prunus_persica	Prupe.1G217100_v2.0.a1 Prupe.1G217100_v2.0.a1 Prupe.1G217100_v2.0.a1
pyrus_communis	pycom13g11230 pycom16g10960
rosa_chinensis	RchiOBHm_Chr4g0429061
rosa_laevigata	RLG00000007100
rosa_multiflora	Rmu_sc0008629.1_g000020
rosa_roxburghii	Rroxscaffold_5G00370700
rosa_rugosa	Rorug04G0232400 Rorug04G0232500 Rorug04G0232600
rosa_samantha	Rh4AG288400 Rh4BG294600 Rh4CG310100 Rh4DG291500
rosa_wichuraiana	Rw4G025000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	95, 910
AciI	CCGC	3 cut(s)	198, 435, 578
AclWI	GGATC	4 cut(s)	142, 927, 940, 1203
AcoI	YGGCCR	1 cut(s)	360
AcsI	RAATTY	1 cut(s)	1017
AcuI	CTGAAG	1 cut(s)	752
AcyI	GRCGYC	1 cut(s)	545
AfaI	GTAC	1 cut(s)	137
AfiI	CCNNNNNNNGG	2 cut(s)	234, 369
AgsI	TTSAA	5 cut(s)	55, 966, 1043, 1104, 1245
AjiI	CACGTC	1 cut(s)	109
AjnI	CCWGG	1 cut(s)	687
AjuI	GAANNNNNNNTTGG	2 cut(s)	566, 598
AluBI	AGCT	5 cut(s)	799, 834, 860, 872, 1032
AluI	AGCT	5 cut(s)	799, 834, 860, 872, 1032
Alw21I	GWGCWC	1 cut(s)	469
Alw26I	GTCTC	3 cut(s)	323, 658, 768
Alw44I	GTGCAC	1 cut(s)	465
AlwI	GGATC	4 cut(s)	142, 927, 940, 1203
AoxI	GGCC	3 cut(s)	199, 360, 487
ApaLI	GTGCAC	1 cut(s)	465
ApeKI	GCWGC	6 cut(s)	5, 219, 557, 560, 872, 991
ApoI	RAATTY	1 cut(s)	1017
AspLEI	GCGC	1 cut(s)	973
AspS9I	GGNCC	2 cut(s)	200, 414
AsuC2I	CCSGG	1 cut(s)	235
AsuHPI	GGTGA	6 cut(s)	71, 103, 133, 424, 699, 1018
AvaII	GGWCC	1 cut(s)	414
BaeGI	GKGCMC	1 cut(s)	469
BalI	TGGCCA	1 cut(s)	362
BamHI	GGATCC	1 cut(s)	932
BanI	GGYRCC	2 cut(s)	95, 910
BanII	GRGCYC	1 cut(s)	429
BbsI	GAAGAC	4 cut(s)	231, 390, 591, 1103
Bbv12I	GWGCWC	1 cut(s)	469
BbvI	GCAGC	5 cut(s)	206, 544, 572, 859, 978
BccI	CCATC	7 cut(s)	107, 404, 437, 941, 997, 1073, 1186
BceAI	ACGGC	1 cut(s)	172
BciT130I	CCWGG	1 cut(s)	689
BciVI	GTATCC	1 cut(s)	1126
BcnI	CCSGG	1 cut(s)	235
BcoDI	GTCTC	3 cut(s)	323, 658, 768
BfaI	CTAG	5 cut(s)	249, 491, 504, 894, 1169
BfmI	CTRYAG	2 cut(s)	558, 992
BfoI	RGCGCY	1 cut(s)	974
BfuI	GTATCC	1 cut(s)	1126
BglII	AGATCT	1 cut(s)	118
BisI	GCNGC	7 cut(s)	6, 199, 220, 558, 561, 873, 992
BlpI	GCTNAGC	1 cut(s)	800
BlsI	GCNGC	7 cut(s)	7, 200, 221, 559, 562, 874, 993
Bme1390I	CCNGG	2 cut(s)	235, 689
Bme18I	GGWCC	1 cut(s)	414
BmgBI	CACGTC	1 cut(s)	109
BmgT120I	GGNCC	2 cut(s)	200, 414
BmiI	GGNNCC	5 cut(s)	97, 415, 571, 912, 934
BmrFI	CCNGG	2 cut(s)	235, 689
BmrI	ACTGGG	2 cut(s)	507, 1232
BmuI	ACTGGG	2 cut(s)	507, 1232
BpiI	GAAGAC	4 cut(s)	231, 390, 591, 1103
BpmI	CTGGAG	3 cut(s)	116, 152, 678
Bpu1102I	GCTNAGC	1 cut(s)	800
BpuMI	CCSGG	1 cut(s)	235
Bsa29I	ATCGAT	2 cut(s)	189, 945
BsaHI	GRCGYC	1 cut(s)	545
BsaJI	CCNNGG	3 cut(s)	154, 687, 1035
Bsc4I	CCNNNNNNNGG	2 cut(s)	234, 369
Bse1I	ACTGG	3 cut(s)	133, 502, 1227
Bse3DI	GCAATG	1 cut(s)	265
BseBI	CCWGG	1 cut(s)	689
BseCI	ATCGAT	2 cut(s)	189, 945
BseDI	CCNNGG	3 cut(s)	154, 687, 1035
BseGI	GGATG	2 cut(s)	585, 1084
BseLI	CCNNNNNNNGG	2 cut(s)	234, 369
BseMI	GCAATG	1 cut(s)	265
BseMII	CTCAG	1 cut(s)	849
BseNI	ACTGG	3 cut(s)	133, 502, 1227
BseRI	GAGGAG	1 cut(s)	153
BseSI	GKGCMC	1 cut(s)	469
BseXI	GCAGC	5 cut(s)	206, 544, 572, 859, 978
BshFI	GGCC	3 cut(s)	201, 362, 489
BshNI	GGYRCC	2 cut(s)	95, 910
BshVI	ATCGAT	2 cut(s)	189, 945
BsiHKAI	GWGCWC	1 cut(s)	469
BsiSI	CCGG	1 cut(s)	234
BslFI	GGGAC	2 cut(s)	532, 1233
BslI	CCNNNNNNNGG	2 cut(s)	234, 369
BsmAI	GTCTC	3 cut(s)	323, 658, 768
BsmFI	GGGAC	2 cut(s)	532, 1233
BsmI	GAATGC	1 cut(s)	951
BsnI	GGCC	3 cut(s)	201, 362, 489
Bsp1286I	GDGCHC	2 cut(s)	429, 469
Bsp143I	GATC	6 cut(s)	118, 147, 190, 932, 1195, 1213
Bsp1720I	GCTNAGC	1 cut(s)	800
Bsp19I	CCATGG	1 cut(s)	1035
BspACI	CCGC	3 cut(s)	198, 435, 578
BspANI	GGCC	3 cut(s)	201, 362, 489
BspCNI	CTCAG	1 cut(s)	848
BspDI	ATCGAT	2 cut(s)	189, 945
BspLI	GGNNCC	5 cut(s)	97, 415, 571, 912, 934
BspMAI	CTGCAG	2 cut(s)	562, 996
BspPI	GGATC	4 cut(s)	142, 927, 940, 1203
BspT107I	GGYRCC	2 cut(s)	95, 910
BsrDI	GCAATG	1 cut(s)	265
BsrI	ACTGG	3 cut(s)	133, 502, 1227
BssECI	CCNNGG	3 cut(s)	154, 687, 1035
BssMI	GATC	6 cut(s)	118, 147, 190, 932, 1195, 1213
BssNI	GRCGYC	1 cut(s)	545
BssT1I	CCWWGG	1 cut(s)	1035
Bst2UI	CCWGG	1 cut(s)	689
Bst4CI	ACNGT	1 cut(s)	808
BstACI	GRCGYC	1 cut(s)	545
BstC8I	GCNNGC	1 cut(s)	870
BstDEI	CTNAG	2 cut(s)	800, 835
BstDSI	CCRYGG	2 cut(s)	154, 1035
BstF5I	GGATG	2 cut(s)	585, 1084
BstH2I	RGCGCY	1 cut(s)	974
BstHHI	GCGC	1 cut(s)	973
BstKTI	GATC	6 cut(s)	121, 150, 193, 935, 1198, 1216
BstMAI	GTCTC	3 cut(s)	323, 658, 768
BstMBI	GATC	6 cut(s)	118, 147, 190, 932, 1195, 1213
BstMWI	GCNNNNNNNGC	3 cut(s)	318, 500, 878
BstNI	CCWGG	1 cut(s)	689
BstSCI	CCNGG	2 cut(s)	233, 687
BstSFI	CTRYAG	2 cut(s)	558, 992
BstSLI	GKGCMC	1 cut(s)	469
BstV1I	GCAGC	5 cut(s)	206, 544, 572, 859, 978
BstV2I	GAAGAC	4 cut(s)	231, 390, 591, 1103
BstX2I	RGATCY	3 cut(s)	118, 147, 932
BstXI	CCANNNNNNTGG	1 cut(s)	1192
BstYI	RGATCY	3 cut(s)	118, 147, 932
Bsu15I	ATCGAT	2 cut(s)	189, 945
BsuI	GTATCC	1 cut(s)	1126
BsuRI	GGCC	3 cut(s)	201, 362, 489
BsuTUI	ATCGAT	2 cut(s)	189, 945
BtgI	CCRYGG	2 cut(s)	154, 1035
BtgZI	GCGATG	1 cut(s)	1065
BtrI	CACGTC	1 cut(s)	109
BtsCI	GGATG	2 cut(s)	585, 1084
Cac8I	GCNNGC	1 cut(s)	870
CfoI	GCGC	1 cut(s)	973
Cfr13I	GGNCC	2 cut(s)	200, 414
ClaI	ATCGAT	2 cut(s)	189, 945
CseI	GACGC	1 cut(s)	534
Csp6I	GTAC	1 cut(s)	136
CviAII	CATG	4 cut(s)	713, 889, 1022, 1036
CviQI	GTAC	1 cut(s)	136
DdeI	CTNAG	2 cut(s)	800, 835
DpnI	GATC	6 cut(s)	120, 149, 192, 934, 1197, 1215
DpnII	GATC	6 cut(s)	118, 147, 190, 932, 1195, 1213
DraI	TTTAAA	1 cut(s)	1237
EaeI	YGGCCR	1 cut(s)	360
Eco130I	CCWWGG	1 cut(s)	1035
Eco147I	AGGCCT	1 cut(s)	489
Eco24I	GRGCYC	1 cut(s)	429
Eco47I	GGWCC	1 cut(s)	414
Eco57I	CTGAAG	1 cut(s)	752
EcoRI	GAATTC	1 cut(s)	1017
EcoRII	CCWGG	1 cut(s)	687
EcoT14I	CCWWGG	1 cut(s)	1035
EcoT38I	GRGCYC	1 cut(s)	429
ErhI	CCWWGG	1 cut(s)	1035
FaeI	CATG	4 cut(s)	716, 892, 1025, 1039
FalI	AAGNNNNNCTT	2 cut(s)	768, 800
FaqI	GGGAC	2 cut(s)	532, 1233
FatI	CATG	4 cut(s)	712, 888, 1021, 1035
Fnu4HI	GCNGC	7 cut(s)	6, 199, 220, 558, 561, 873, 992
FokI	GGATG	2 cut(s)	572, 1091
FriOI	GRGCYC	1 cut(s)	429
Fsp4HI	GCNGC	7 cut(s)	6, 199, 220, 558, 561, 873, 992
FspBI	CTAG	5 cut(s)	249, 491, 504, 894, 1169
GlaI	GCGC	1 cut(s)	972
GluI	GCNGC	7 cut(s)	6, 199, 220, 558, 561, 873, 992
GsuI	CTGGAG	3 cut(s)	116, 152, 678
HaeII	RGCGCY	1 cut(s)	974
HaeIII	GGCC	3 cut(s)	201, 362, 489
HapII	CCGG	1 cut(s)	234
HgaI	GACGC	1 cut(s)	534
HhaI	GCGC	1 cut(s)	973
Hin1I	GRCGYC	1 cut(s)	545
Hin1II	CATG	4 cut(s)	716, 892, 1025, 1039
Hin6I	GCGC	1 cut(s)	971
HinP1I	GCGC	1 cut(s)	971
HincII	GTYRAC	1 cut(s)	748
HindII	GTYRAC	1 cut(s)	748
HindIII	AAGCTT	1 cut(s)	858
HinfI	GANTC	9 cut(s)	230, 348, 519, 529, 704, 744, 902, 921, 1241
HpaII	CCGG	1 cut(s)	234
HphI	GGTGA	6 cut(s)	71, 103, 133, 424, 699, 1018
Hpy166II	GTNNAC	2 cut(s)	467, 748
Hpy188I	TCNGA	6 cut(s)	229, 483, 524, 743, 768, 1213
Hpy188III	TCNNGA	3 cut(s)	249, 657, 966
Hpy8I	GTNNAC	2 cut(s)	467, 748
HpyAV	CCTTC	4 cut(s)	32, 234, 407, 519
HpyCH4III	ACNGT	1 cut(s)	808
HpyCH4IV	ACGT	2 cut(s)	108, 1187
HpyCH4V	TGCA	4 cut(s)	16, 467, 560, 994
HpyF10VI	GCNNNNNNNGC	3 cut(s)	318, 500, 878
HpyF3I	CTNAG	2 cut(s)	800, 835
HpySE526I	ACGT	2 cut(s)	108, 1187
Hsp92I	GRCGYC	1 cut(s)	545
Hsp92II	CATG	4 cut(s)	716, 892, 1025, 1039
HspAI	GCGC	1 cut(s)	971
Kzo9I	GATC	6 cut(s)	118, 147, 190, 932, 1195, 1213
LmnI	GCTCC	2 cut(s)	1037, 1090
Lsp1109I	GCAGC	5 cut(s)	206, 544, 572, 859, 978
MaeI	CTAG	5 cut(s)	249, 491, 504, 894, 1169
MaeII	ACGT	2 cut(s)	108, 1187
MaeIII	GTNAC	3 cut(s)	109, 691, 1140
MalI	GATC	6 cut(s)	120, 149, 192, 934, 1197, 1215
MboI	GATC	6 cut(s)	118, 147, 190, 932, 1195, 1213
MboII	GAAGA	8 cut(s)	17, 20, 231, 237, 395, 591, 1108, 1173
MfeI	CAATTG	3 cut(s)	758, 1104, 1124
MflI	RGATCY	3 cut(s)	118, 147, 932
MhlI	GDGCHC	2 cut(s)	429, 469
MlsI	TGGCCA	1 cut(s)	362
MluCI	AATT	9 cut(s)	49, 442, 473, 552, 758, 769, 1017, 1104, 1124
MluNI	TGGCCA	1 cut(s)	362
MlyI	GAGTC	5 cut(s)	513, 538, 698, 753, 915
MnlI	CCTC	9 cut(s)	140, 174, 191, 218, 500, 599, 772, 782, 1123
Mox20I	TGGCCA	1 cut(s)	362
MscI	TGGCCA	1 cut(s)	362
MseI	TTAA	3 cut(s)	441, 795, 1236
MslI	CAYNNNNRTG	3 cut(s)	356, 627, 1190
Msp20I	TGGCCA	1 cut(s)	362
MspA1I	CMGCKG	1 cut(s)	437
MspI	CCGG	1 cut(s)	234
MspR9I	CCNGG	2 cut(s)	235, 689
MunI	CAATTG	3 cut(s)	758, 1104, 1124
Mva1269I	GAATGC	1 cut(s)	951
MvaI	CCWGG	1 cut(s)	689
MwoI	GCNNNNNNNGC	3 cut(s)	318, 500, 878
NciI	CCSGG	1 cut(s)	235
NcoI	CCATGG	1 cut(s)	1035
NdeII	GATC	6 cut(s)	118, 147, 190, 932, 1195, 1213
NlaIII	CATG	4 cut(s)	716, 892, 1025, 1039
NlaIV	GGNNCC	5 cut(s)	97, 415, 571, 912, 934
NmeAIII	GCCGAG	2 cut(s)	174, 195
NmuCI	GTSAC	1 cut(s)	109
PceI	AGGCCT	1 cut(s)	489
PcsI	WCGNNNNNNNCGW	1 cut(s)	621
PctI	GAATGC	1 cut(s)	951
PfeI	GAWTC	4 cut(s)	230, 348, 902, 1241
PkrI	GCNGC	7 cut(s)	7, 200, 221, 559, 562, 874, 993
PleI	GAGTC	5 cut(s)	513, 537, 698, 752, 915
PpsI	GAGTC	5 cut(s)	513, 537, 698, 752, 915
Psp6I	CCWGG	1 cut(s)	687
PspGI	CCWGG	1 cut(s)	687
PspN4I	GGNNCC	5 cut(s)	97, 415, 571, 912, 934
PspPI	GGNCC	2 cut(s)	200, 414
PstI	CTGCAG	2 cut(s)	562, 996
PsuI	RGATCY	3 cut(s)	118, 147, 932
RsaI	GTAC	1 cut(s)	137
RsaNI	GTAC	1 cut(s)	136
RseI	CAYNNNNRTG	3 cut(s)	356, 627, 1190
SaqAI	TTAA	3 cut(s)	441, 795, 1236
SatI	GCNGC	7 cut(s)	6, 199, 220, 558, 561, 873, 992
Sau3AI	GATC	6 cut(s)	118, 147, 190, 932, 1195, 1213
Sau96I	GGNCC	2 cut(s)	200, 414
SchI	GAGTC	5 cut(s)	513, 538, 698, 753, 915
ScrFI	CCNGG	2 cut(s)	235, 689
SduI	GDGCHC	2 cut(s)	429, 469
SfcI	CTRYAG	2 cut(s)	558, 992
SinI	GGWCC	1 cut(s)	414
SmiMI	CAYNNNNRTG	3 cut(s)	356, 627, 1190
Sse9I	AATT	9 cut(s)	49, 442, 473, 552, 758, 769, 1017, 1104, 1124
SseBI	AGGCCT	1 cut(s)	489
SsiI	CCGC	3 cut(s)	198, 435, 578
SspMI	CTAG	5 cut(s)	249, 491, 504, 894, 1169
StuI	AGGCCT	1 cut(s)	489
StyD4I	CCNGG	2 cut(s)	233, 687
StyI	CCWWGG	1 cut(s)	1035
TaaI	ACNGT	1 cut(s)	808
TaiI	ACGT	2 cut(s)	111, 1190
TaqI	TCGA	3 cut(s)	189, 532, 945
TasI	AATT	9 cut(s)	49, 442, 473, 552, 758, 769, 1017, 1104, 1124
TatI	WGTACW	1 cut(s)	135
TauI	GCSGC	1 cut(s)	201
TfiI	GAWTC	4 cut(s)	230, 348, 902, 1241
Tru1I	TTAA	3 cut(s)	441, 795, 1236
Tru9I	TTAA	3 cut(s)	441, 795, 1236
TseFI	GTSAC	1 cut(s)	109
TseI	GCWGC	6 cut(s)	5, 219, 557, 560, 872, 991
Tsp45I	GTSAC	1 cut(s)	109
TspDTI	ATGAA	7 cut(s)	231, 574, 591, 712, 899, 1010, 1068
TspGWI	ACGGA	1 cut(s)	390
VneI	GTGCAC	1 cut(s)	465
VpaK11BI	GGWCC	1 cut(s)	414
XapI	RAATTY	1 cut(s)	1017
XbaI	TCTAGA	1 cut(s)	248
XspI	CTAG	5 cut(s)	249, 491, 504, 894, 1169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.