Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0006342

Physical Location & Seq

Genomic Coordinates Reverse (-)

9771582 .. 9774791

Gene Structure 3210 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1129300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGCCTGATATCCAATCTCACAATTGGACTTCCTGGACACAGCTTGAATTACTTGATTTTGGCATCTTCAAATTTGATTCTGGTAAAAGCACTTTCTTGAAGTCATTCAAGTTCATGGATGTTGGAGAAACAAAATGTTCCTATGGAAAGCCTCCATGGATATTCAGAGGCAGCGCGTTGTATCAGCTCCATCTTGTCAAAGCAGCAACTGTTCGAGCATGCATCCCGAAAGAGTTCAGACTAGTTGAAGCATTTGGGTACACTCTTGGTGGCTTCTTTCTTGCCAAGTATGATGACAGTCCAGTTGGAATCTTTGATGAGCTCGTTGTGATCGCTGGACTTGTTTGGAGCCCACCAACATCTTGCGCCTGGGCAGCTAAGGTGCTTGTGAATAGTGATGAAGCTTGTGACCATGGACGAAAGGAAGTAGGCCTTCCAAGTCAAGTTGCGAGGTTTTCGAAGAGGATTACAGCAGTTTCAAGGCAACCAAAGAGCAAAAACATTGGATTTCTTAGTGTAATTGGTAGCAGTGCTGCTTTCTGTGATCCAAAAGATTGTATGGAAGTTCAAGTGACCGAAATCAAGGCTTCATCGGTTAAAGATTCCTTTAATTTCAACCTTACTACTTTCGTGCCTGAATCGAATGGTGGGTGGAGGGGGCCGGCGATCAAATTGTCACTTCCAAGTTTTAGCGGTGGCACAGAATATTATCCCAACCTTCTCAAGTACTCTTGCCGGATTGAGTGCAGGGTACGAGCAGTGCATCCAGCAAAAGTATCAGGACCATCTCCGATGCCAAAGACCGAGACAAGACAATCATCAGAAATCCATACTAGCAGTACAAAGAACCACGCAACTGAAGAACTCGGGGATAATGGCAAGAACCTCTGTGAAGCTGTGATGTTATCAAAGCCTGTATTGGCATTGGAGTTCAGTTGTATGAAAATGCAGGTTGAAGCTCCAGTTGTAGTTTCCAACTGCAGGAACTCTTTAGCAACCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016122 GO:0016123 GO:0042440 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0046148 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADC

Protein Analysis

335

Amino Acids

36.71

Weight (kDa)

8.68

Isoelectric Point (pI)

47.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006342)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28100 AT1G28100 AT1G28100 AT1G28100 AT1G28100 AT1G28100
fragaria_vesca	FvH4_4g22830 FvH4_4g22830
malus_domestica	MD13G1129300.v1.1 MD16G1129300.v1.1
prunus_persica	Prupe.1G217100_v2.0.a1 Prupe.1G217100_v2.0.a1 Prupe.1G217100_v2.0.a1
pyrus_communis	pycom13g11230 pycom16g10960
rosa_chinensis	RchiOBHm_Chr4g0429061
rosa_laevigata	RLG00000007100
rosa_multiflora	Rmu_sc0008629.1_g000020
rosa_roxburghii	Rroxscaffold_5G00370700
rosa_rugosa	Rorug04G0232400 Rorug04G0232500 Rorug04G0232600
rosa_samantha	Rh4AG288400 Rh4BG294600 Rh4CG310100 Rh4DG291500
rosa_wichuraiana	Rw4G025000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	940
AccII	CGCG	1 cut(s)	176
AciI	CCGC	1 cut(s)	693
AclWI	GGATC	1 cut(s)	539
AcsI	RAATTY	1 cut(s)	71
AcuI	CTGAAG	1 cut(s)	879
AfaI	GTAC	4 cut(s)	260, 728, 753, 841
AfiI	CCNNNNNNNGG	1 cut(s)	981
AgsI	TTSAA	9 cut(s)	47, 70, 100, 109, 248, 480, 569, 616, 956
AhlI	ACTAGT	1 cut(s)	241
AjnI	CCWGG	2 cut(s)	32, 368
AluBI	AGCT	7 cut(s)	43, 187, 322, 377, 404, 896, 959
AluI	AGCT	7 cut(s)	43, 187, 322, 377, 404, 896, 959
Alw21I	GWGCWC	1 cut(s)	324
Alw26I	GTCTC	1 cut(s)	800
AlwI	GGATC	1 cut(s)	539
AlwNI	CAGNNNCTG	1 cut(s)	209
Ama87I	CYCGRG	1 cut(s)	866
AoxI	GGCC	2 cut(s)	430, 659
ApeKI	GCWGC	4 cut(s)	171, 203, 374, 533
ApoI	RAATTY	1 cut(s)	71
Asp700I	GAANNNNTTC	2 cut(s)	104, 233
AspLEI	GCGC	2 cut(s)	176, 368
AspS9I	GGNCC	2 cut(s)	659, 782
AsuII	TTCGAA	1 cut(s)	458
AvaI	CYCGRG	1 cut(s)	866
AvaII	GGWCC	1 cut(s)	782
BanII	GRGCYC	2 cut(s)	324, 353
Bbv12I	GWGCWC	1 cut(s)	324
BbvI	GCAGC	4 cut(s)	183, 215, 386, 520
BccI	CCATC	2 cut(s)	198, 793
BciT130I	CCWGG	2 cut(s)	34, 370
BcoDI	GTCTC	1 cut(s)	800
BcuI	ACTAGT	1 cut(s)	241
BfaI	CTAG	2 cut(s)	242, 834
BfmI	CTRYAG	1 cut(s)	979
BfuAI	ACCTGC	1 cut(s)	940
BisI	GCNGC	4 cut(s)	172, 204, 375, 534
BlsI	GCNGC	4 cut(s)	173, 205, 376, 535
BmcAI	AGTACT	1 cut(s)	728
Bme1390I	CCNGG	2 cut(s)	34, 370
Bme18I	GGWCC	1 cut(s)	782
BmeT110I	CYCGRG	1 cut(s)	866
BmgT120I	GGNCC	2 cut(s)	659, 782
BmiI	GGNNCC	2 cut(s)	350, 660
BmrFI	CCNGG	2 cut(s)	34, 370
BmsI	GCATC	4 cut(s)	72, 231, 772, 783
BpmI	CTGGAG	1 cut(s)	945
Bpu10I	CCTNAGC	1 cut(s)	378
Bpu14I	TTCGAA	1 cut(s)	458
BpuEI	CTTGAG	1 cut(s)	707
BsaJI	CCNNGG	3 cut(s)	155, 369, 412
Bsc4I	CCNNNNNNNGG	1 cut(s)	981
Bse118I	RCCGGY	1 cut(s)	661
Bse1I	ACTGG	2 cut(s)	302, 962
BseBI	CCWGG	2 cut(s)	34, 370
BseDI	CCNNGG	3 cut(s)	155, 369, 412
BseGI	GGATG	3 cut(s)	124, 222, 763
BseLI	CCNNNNNNNGG	1 cut(s)	981
BseNI	ACTGG	2 cut(s)	302, 962
BseXI	GCAGC	4 cut(s)	183, 215, 386, 520
BsgI	GTGCAG	1 cut(s)	766
Bsh1236I	CGCG	1 cut(s)	176
BshFI	GGCC	2 cut(s)	432, 661
BsiHKAI	GWGCWC	1 cut(s)	324
BsiHKCI	CYCGRG	1 cut(s)	866
BsiSI	CCGG	2 cut(s)	662, 736
BslI	CCNNNNNNNGG	1 cut(s)	981
BsmAI	GTCTC	1 cut(s)	800
BsnI	GGCC	2 cut(s)	432, 661
BsoBI	CYCGRG	1 cut(s)	866
Bsp119I	TTCGAA	1 cut(s)	458
Bsp1286I	GDGCHC	2 cut(s)	324, 353
Bsp143I	GATC	3 cut(s)	330, 544, 666
Bsp19I	CCATGG	2 cut(s)	155, 412
BspACI	CCGC	1 cut(s)	693
BspANI	GGCC	2 cut(s)	432, 661
BspFNI	CGCG	1 cut(s)	176
BspLI	GGNNCC	2 cut(s)	350, 660
BspMAI	CTGCAG	1 cut(s)	983
BspMI	ACCTGC	1 cut(s)	940
BspPI	GGATC	1 cut(s)	539
BspT104I	TTCGAA	1 cut(s)	458
BsrFI	RCCGGY	1 cut(s)	661
BsrI	ACTGG	2 cut(s)	302, 962
BssAI	RCCGGY	1 cut(s)	661
BssECI	CCNNGG	3 cut(s)	155, 369, 412
BssMI	GATC	3 cut(s)	330, 544, 666
BssT1I	CCWWGG	2 cut(s)	155, 412
Bst2UI	CCWGG	2 cut(s)	34, 370
Bst4CI	ACNGT	2 cut(s)	211, 299
Bst6I	CTCTTC	1 cut(s)	455
BstBI	TTCGAA	1 cut(s)	458
BstC8I	GCNNGC	2 cut(s)	220, 663
BstDEI	CTNAG	2 cut(s)	378, 512
BstDSI	CCRYGG	2 cut(s)	155, 412
BstF5I	GGATG	3 cut(s)	124, 222, 763
BstFNI	CGCG	1 cut(s)	176
BstHHI	GCGC	2 cut(s)	176, 368
BstKTI	GATC	3 cut(s)	333, 547, 669
BstMAI	GTCTC	1 cut(s)	800
BstMBI	GATC	3 cut(s)	330, 544, 666
BstMWI	GCNNNNNNNGC	1 cut(s)	374
BstNI	CCWGG	2 cut(s)	34, 370
BstNSI	RCATGY	1 cut(s)	222
BstSCI	CCNGG	2 cut(s)	32, 368
BstSFI	CTRYAG	1 cut(s)	979
BstUI	CGCG	1 cut(s)	176
BstV1I	GCAGC	4 cut(s)	183, 215, 386, 520
BsuRI	GGCC	2 cut(s)	432, 661
BtgI	CCRYGG	2 cut(s)	155, 412
BtsCI	GGATG	3 cut(s)	124, 222, 763
BtsI	GCAGTG	2 cut(s)	535, 765
BtsIMutI	CAGTG	2 cut(s)	535, 765
BveI	ACCTGC	1 cut(s)	940
Cac8I	GCNNGC	2 cut(s)	220, 663
CaiI	CAGNNNCTG	1 cut(s)	209
CfoI	GCGC	2 cut(s)	176, 368
Cfr10I	RCCGGY	1 cut(s)	661
Cfr13I	GGNCC	2 cut(s)	659, 782
Csp6I	GTAC	4 cut(s)	259, 727, 752, 840
CviAII	CATG	4 cut(s)	115, 156, 219, 413
CviQI	GTAC	4 cut(s)	259, 727, 752, 840
DdeI	CTNAG	2 cut(s)	378, 512
DpnI	GATC	3 cut(s)	332, 546, 668
DpnII	GATC	3 cut(s)	330, 544, 666
Eam1104I	CTCTTC	1 cut(s)	455
EarI	CTCTTC	1 cut(s)	455
Ecl136II	GAGCTC	1 cut(s)	322
Eco130I	CCWWGG	2 cut(s)	155, 412
Eco147I	AGGCCT	1 cut(s)	432
Eco24I	GRGCYC	2 cut(s)	324, 353
Eco32I	GATATC	1 cut(s)	10
Eco47I	GGWCC	1 cut(s)	782
Eco53kI	GAGCTC	1 cut(s)	322
Eco57I	CTGAAG	1 cut(s)	879
Eco88I	CYCGRG	1 cut(s)	866
EcoICRI	GAGCTC	1 cut(s)	322
EcoRII	CCWGG	2 cut(s)	32, 368
EcoRV	GATATC	1 cut(s)	10
EcoT14I	CCWWGG	2 cut(s)	155, 412
EcoT22I	ATGCAT	1 cut(s)	224
EcoT38I	GRGCYC	2 cut(s)	324, 353
ErhI	CCWWGG	2 cut(s)	155, 412
FaeI	CATG	4 cut(s)	118, 159, 222, 416
FaiI	YATR	9 cut(s)	116, 144, 157, 220, 291, 414, 560, 831, 941
FalI	AAGNNNNNCTT	2 cut(s)	417, 449
FatI	CATG	4 cut(s)	114, 155, 218, 412
Fnu4HI	GCNGC	4 cut(s)	172, 204, 375, 534
FokI	GGATG	3 cut(s)	131, 209, 750
FriOI	GRGCYC	2 cut(s)	324, 353
Fsp4HI	GCNGC	4 cut(s)	172, 204, 375, 534
FspBI	CTAG	2 cut(s)	242, 834
GlaI	GCGC	2 cut(s)	175, 367
GluI	GCNGC	4 cut(s)	172, 204, 375, 534
GsuI	CTGGAG	1 cut(s)	945
HaeIII	GGCC	2 cut(s)	432, 661
HapII	CCGG	2 cut(s)	662, 736
HhaI	GCGC	2 cut(s)	176, 368
Hin1II	CATG	4 cut(s)	118, 159, 222, 416
Hin6I	GCGC	2 cut(s)	174, 366
HinP1I	GCGC	2 cut(s)	174, 366
HindIII	AAGCTT	1 cut(s)	402
HinfI	GANTC	4 cut(s)	77, 309, 602, 638
HpaII	CCGG	2 cut(s)	662, 736
Hpy166II	GTNNAC	1 cut(s)	261
Hpy188I	TCNGA	4 cut(s)	167, 239, 792, 823
Hpy188III	TCNNGA	4 cut(s)	97, 226, 780, 1002
Hpy8I	GTNNAC	1 cut(s)	261
HpyAV	CCTTC	2 cut(s)	443, 728
HpyCH4III	ACNGT	2 cut(s)	211, 299
HpyCH4V	TGCA	5 cut(s)	222, 747, 763, 949, 981
HpyF10VI	GCNNNNNNNGC	1 cut(s)	374
HpyF3I	CTNAG	2 cut(s)	378, 512
Hsp92II	CATG	4 cut(s)	118, 159, 222, 416
HspAI	GCGC	2 cut(s)	174, 366
KroI	GCCGGC	1 cut(s)	661
KroNI	GCCGGC	1 cut(s)	663
Kzo9I	GATC	3 cut(s)	330, 544, 666
LmnI	GCTCC	3 cut(s)	192, 348, 964
Lsp1109I	GCAGC	4 cut(s)	183, 215, 386, 520
LweI	GCATC	4 cut(s)	72, 231, 772, 783
MaeI	CTAG	2 cut(s)	242, 834
MaeIII	GTNAC	3 cut(s)	407, 571, 675
MalI	GATC	3 cut(s)	332, 546, 668
MboI	GATC	3 cut(s)	330, 544, 666
MboII	GAAGA	3 cut(s)	58, 472, 872
MfeI	CAATTG	1 cut(s)	22
MhlI	GDGCHC	2 cut(s)	324, 353
MluCI	AATT	6 cut(s)	22, 47, 71, 519, 610, 671
MmeI	TCCRAC	3 cut(s)	103, 286, 999
MnlI	CCTC	6 cut(s)	161, 162, 444, 456, 648, 896
Mph1103I	ATGCAT	1 cut(s)	224
MroNI	GCCGGC	1 cut(s)	661
MroXI	GAANNNNTTC	2 cut(s)	104, 233
MseI	TTAA	2 cut(s)	597, 609
MspI	CCGG	2 cut(s)	662, 736
MspR9I	CCNGG	2 cut(s)	34, 370
MunI	CAATTG	1 cut(s)	22
MvaI	CCWGG	2 cut(s)	34, 370
MvnI	CGCG	1 cut(s)	176
MwoI	GCNNNNNNNGC	1 cut(s)	374
NaeI	GCCGGC	1 cut(s)	663
NcoI	CCATGG	2 cut(s)	155, 412
NdeII	GATC	3 cut(s)	330, 544, 666
NgoMIV	GCCGGC	1 cut(s)	661
NlaIII	CATG	4 cut(s)	118, 159, 222, 416
NlaIV	GGNNCC	2 cut(s)	350, 660
NmuCI	GTSAC	3 cut(s)	407, 571, 675
NsiI	ATGCAT	1 cut(s)	224
NspI	RCATGY	1 cut(s)	222
NspV	TTCGAA	1 cut(s)	458
PaeI	GCATGC	1 cut(s)	222
PceI	AGGCCT	1 cut(s)	432
PdiI	GCCGGC	1 cut(s)	663
PdmI	GAANNNNTTC	2 cut(s)	104, 233
PfeI	GAWTC	4 cut(s)	77, 309, 602, 638
PfoI	TCCNGGA	1 cut(s)	32
PkrI	GCNGC	4 cut(s)	173, 205, 376, 535
Psp124BI	GAGCTC	1 cut(s)	324
Psp6I	CCWGG	2 cut(s)	32, 368
PspGI	CCWGG	2 cut(s)	32, 368
PspN4I	GGNNCC	2 cut(s)	350, 660
PspPI	GGNCC	2 cut(s)	659, 782
PstI	CTGCAG	1 cut(s)	983
PstNI	CAGNNNCTG	1 cut(s)	209
RsaI	GTAC	4 cut(s)	260, 728, 753, 841
RsaNI	GTAC	4 cut(s)	259, 727, 752, 840
SacI	GAGCTC	1 cut(s)	324
SaqAI	TTAA	2 cut(s)	597, 609
SatI	GCNGC	4 cut(s)	172, 204, 375, 534
Sau3AI	GATC	3 cut(s)	330, 544, 666
Sau96I	GGNCC	2 cut(s)	659, 782
ScaI	AGTACT	1 cut(s)	728
ScrFI	CCNGG	2 cut(s)	34, 370
SduI	GDGCHC	2 cut(s)	324, 353
SfaNI	GCATC	4 cut(s)	72, 231, 772, 783
SfcI	CTRYAG	1 cut(s)	979
SfuI	TTCGAA	1 cut(s)	458
SinI	GGWCC	1 cut(s)	782
SmlI	CTYRAG	1 cut(s)	722
SmoI	CTYRAG	1 cut(s)	722
SpeI	ACTAGT	1 cut(s)	241
SphI	GCATGC	1 cut(s)	222
Sse9I	AATT	6 cut(s)	22, 47, 71, 519, 610, 671
SseBI	AGGCCT	1 cut(s)	432
SsiI	CCGC	1 cut(s)	693
SspI	AATATT	1 cut(s)	707
SspMI	CTAG	2 cut(s)	242, 834
SstI	GAGCTC	1 cut(s)	324
StuI	AGGCCT	1 cut(s)	432
StyD4I	CCNGG	2 cut(s)	32, 368
StyI	CCWWGG	2 cut(s)	155, 412
TaaI	ACNGT	2 cut(s)	211, 299
TaqI	TCGA	3 cut(s)	214, 458, 641
TaqII	GACCGA	2 cut(s)	590, 818
TasI	AATT	6 cut(s)	22, 47, 71, 519, 610, 671
TatI	WGTACW	2 cut(s)	726, 839
TfiI	GAWTC	4 cut(s)	77, 309, 602, 638
Tru1I	TTAA	2 cut(s)	597, 609
Tru9I	TTAA	2 cut(s)	597, 609
TscAI	CASTG	2 cut(s)	535, 765
TseFI	GTSAC	3 cut(s)	407, 571, 675
TseI	GCWGC	4 cut(s)	171, 203, 374, 533
Tsp45I	GTSAC	3 cut(s)	407, 571, 675
TspDTI	ATGAA	4 cut(s)	103, 414, 579, 956
TspRI	CASTG	2 cut(s)	535, 765
VpaK11BI	GGWCC	1 cut(s)	782
XapI	RAATTY	1 cut(s)	71
XceI	RCATGY	1 cut(s)	222
XmnI	GAANNNNTTC	2 cut(s)	104, 233
XspI	CTAG	2 cut(s)	242, 834
ZrmI	AGTACT	1 cut(s)	728
Zsp2I	ATGCAT	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.