Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0006342

Physical Location & Seq

Genomic Coordinates Forward (+)

23000849 .. 23004837

Gene Structure 3989 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G217100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGATATTGGACAAATGAAATGTTCCTCGAGCTATGGAAAGCCTCCATGGATATTCAAAGGCAGTGCGTTGTATCAATTCCATCTTGTCAAAGCAGCAACTGTTCGTGCATGCATCCCAAAAGAGTTCAGATTAGTTGAAGCATTTGGGTATACCCTTGGTGGCTTCTTTCTTGCCAACTATGATGACAGTCCAGCTGGAGTCTTTGATGAGCTCGTTGTAATTGCTGGACTTGTATGGAGCCCACCAACATCTTGCGCATGGGCAGCTAAGGTGCTGGTGAATAGTTATGAAGCTTGTGATCATGGACGAAAGGAAGTGGGGCTTCCAAGTCACGTTGCGAGGTTTTCTAAGACAATTACAGCAGTTTCAGGAAAATCAAAGAGCAAAAATATTGGATTTCTAAATGCAATTGGCATGAATGCTGTTTTCTGTGAACCAAGAGATTGTATGGATGTTCAAGTGACTGAAATCAACGATCCAACTGTAAAAGATATCTGTAATATCAACCTTACCACTTTTGTGCCTGCATCAAATATTGGCAACTGGATGGGGCCAGCGATCAAAATGTCACTTCCAAGTTTTAGCGGCCGTACAGAATATTATCCCAACCTTCTCAAGTACTCTTGCCAGATTGAGTGCAGGGTGCGAGCAGTGCATCCAGCAAAGGTATCAGGACCACCTTCGATGCCAAAGAGCGAGGCAGAACAATCTTCAGAAATCCATCACGCGACAGAAGAATTCATGGATAATAGCAAGAACCTCTGTGTAGCTGTGATGTCATCAAAGCCTATATTGGCATTAAAGTTCAGTTGTATGAAAATGCAGGTTGAAGCTCCAGTTGTAGTTCCCAACAGCTTTAACAACTCTCTAGCAACCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016122 GO:0016123 GO:0042440 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0046148 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADC

Protein Analysis

295

Amino Acids

32.07

Weight (kDa)

8.24

Isoelectric Point (pI)

54.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006342)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28100 AT1G28100 AT1G28100 AT1G28100 AT1G28100 AT1G28100
fragaria_vesca	FvH4_4g22830 FvH4_4g22830
malus_domestica	MD13G1129300.v1.1 MD16G1129300.v1.1
prunus_persica	Prupe.1G217100_v2.0.a1 Prupe.1G217100_v2.0.a1 Prupe.1G217100_v2.0.a1
pyrus_communis	pycom13g11230 pycom16g10960
rosa_chinensis	RchiOBHm_Chr4g0429061
rosa_laevigata	RLG00000007100
rosa_multiflora	Rmu_sc0008629.1_g000020
rosa_roxburghii	Rroxscaffold_5G00370700
rosa_rugosa	Rorug04G0232400 Rorug04G0232500 Rorug04G0232600
rosa_samantha	Rh4AG288400 Rh4BG294600 Rh4CG310100 Rh4DG291500
rosa_wichuraiana	Rw4G025000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	259
Acc36I	ACCTGC	1 cut(s)	817
AccI	GTMKAC	1 cut(s)	152
AccII	CGCG	1 cut(s)	731
AciI	CCGC	1 cut(s)	588
AclWI	GGATC	1 cut(s)	473
AcoI	YGGCCR	1 cut(s)	589
AcsI	RAATTY	1 cut(s)	740
AcuI	CTGAAG	1 cut(s)	699
AfaI	GTAC	2 cut(s)	595, 623
AgsI	TTSAA	4 cut(s)	58, 140, 461, 833
AleI	CACNNNNGTG	1 cut(s)	521
AluBI	AGCT	8 cut(s)	33, 197, 214, 269, 296, 773, 836, 858
AluI	AGCT	8 cut(s)	33, 197, 214, 269, 296, 773, 836, 858
Alw21I	GWGCWC	1 cut(s)	216
AlwI	GGATC	1 cut(s)	473
AlwNI	CAGNNNCTG	1 cut(s)	101
Ama87I	CYCGRG	1 cut(s)	28
AoxI	GGCC	2 cut(s)	554, 589
ApeKI	GCWGC	2 cut(s)	95, 266
ApoI	RAATTY	1 cut(s)	740
AspLEI	GCGC	1 cut(s)	260
AspS9I	GGNCC	2 cut(s)	554, 677
AsuHPI	GGTGA	1 cut(s)	292
AvaI	CYCGRG	1 cut(s)	28
AvaII	GGWCC	1 cut(s)	677
BanII	GRGCYC	2 cut(s)	216, 245
Bbv12I	GWGCWC	1 cut(s)	216
BbvI	GCAGC	2 cut(s)	107, 278
BccI	CCATC	3 cut(s)	90, 544, 732
BceAI	ACGGC	1 cut(s)	576
BclI	TGATCA	1 cut(s)	301
BfaI	CTAG	1 cut(s)	872
BfuAI	ACCTGC	1 cut(s)	817
BisI	GCNGC	3 cut(s)	96, 267, 589
BlsI	GCNGC	3 cut(s)	97, 268, 590
BmcAI	AGTACT	1 cut(s)	623
Bme18I	GGWCC	1 cut(s)	677
BmeT110I	CYCGRG	1 cut(s)	28
BmgT120I	GGNCC	2 cut(s)	554, 677
BmiI	GGNNCC	2 cut(s)	242, 555
BmsI	GCATC	4 cut(s)	123, 539, 667, 678
BpmI	CTGGAG	2 cut(s)	219, 822
Bpu10I	CCTNAGC	1 cut(s)	270
BpuEI	CTTGAG	1 cut(s)	602
BsaJI	CCNNGG	2 cut(s)	47, 157
Bse1I	ACTGG	2 cut(s)	551, 839
BseDI	CCNNGG	2 cut(s)	47, 157
BseGI	GGATG	4 cut(s)	114, 460, 555, 658
BseNI	ACTGG	2 cut(s)	551, 839
BseX3I	CGGCCG	1 cut(s)	589
BseXI	GCAGC	2 cut(s)	107, 278
BsgI	GTGCAG	1 cut(s)	661
Bsh1236I	CGCG	1 cut(s)	731
Bsh1285I	CGRYCG	1 cut(s)	592
BshFI	GGCC	2 cut(s)	556, 591
BsiEI	CGRYCG	1 cut(s)	592
BsiHKAI	GWGCWC	1 cut(s)	216
BsiHKCI	CYCGRG	1 cut(s)	28
BsmI	GAATGC	1 cut(s)	427
BsnI	GGCC	2 cut(s)	556, 591
BsoBI	CYCGRG	1 cut(s)	28
Bsp1286I	GDGCHC	2 cut(s)	216, 245
Bsp143I	GATC	3 cut(s)	301, 478, 561
Bsp19I	CCATGG	1 cut(s)	47
BspACI	CCGC	1 cut(s)	588
BspANI	GGCC	2 cut(s)	556, 591
BspFNI	CGCG	1 cut(s)	731
BspLI	GGNNCC	2 cut(s)	242, 555
BspMI	ACCTGC	1 cut(s)	817
BspPI	GGATC	1 cut(s)	473
BsrI	ACTGG	2 cut(s)	551, 839
BssECI	CCNNGG	2 cut(s)	47, 157
BssMI	GATC	3 cut(s)	301, 478, 561
BssNAI	GTATAC	1 cut(s)	153
BssT1I	CCWWGG	2 cut(s)	47, 157
Bst1107I	GTATAC	1 cut(s)	153
Bst4CI	ACNGT	3 cut(s)	103, 191, 487
BstC8I	GCNNGC	4 cut(s)	112, 528, 558, 651
BstDEI	CTNAG	2 cut(s)	270, 351
BstDSI	CCRYGG	1 cut(s)	47
BstF5I	GGATG	4 cut(s)	114, 460, 555, 658
BstFNI	CGCG	1 cut(s)	731
BstHHI	GCGC	1 cut(s)	260
BstKTI	GATC	3 cut(s)	304, 481, 564
BstMBI	GATC	3 cut(s)	301, 478, 561
BstMCI	CGRYCG	1 cut(s)	592
BstMWI	GCNNNNNNNGC	2 cut(s)	266, 655
BstNSI	RCATGY	1 cut(s)	114
BstUI	CGCG	1 cut(s)	731
BstV1I	GCAGC	2 cut(s)	107, 278
BstZ17I	GTATAC	1 cut(s)	153
BstZI	CGGCCG	1 cut(s)	589
BsuRI	GGCC	2 cut(s)	556, 591
BtgI	CCRYGG	1 cut(s)	47
BtsCI	GGATG	4 cut(s)	114, 460, 555, 658
BtsI	GCAGTG	2 cut(s)	70, 660
BtsIMutI	CAGTG	2 cut(s)	70, 660
BveI	ACCTGC	1 cut(s)	817
Cac8I	GCNNGC	4 cut(s)	112, 528, 558, 651
CaiI	CAGNNNCTG	1 cut(s)	101
CfoI	GCGC	1 cut(s)	260
Cfr13I	GGNCC	2 cut(s)	554, 677
Csp6I	GTAC	2 cut(s)	594, 622
CviAII	CATG	6 cut(s)	48, 111, 261, 305, 418, 745
CviQI	GTAC	2 cut(s)	594, 622
DdeI	CTNAG	2 cut(s)	270, 351
DpnI	GATC	3 cut(s)	303, 480, 563
DpnII	GATC	3 cut(s)	301, 478, 561
EaeI	YGGCCR	1 cut(s)	589
EagI	CGGCCG	1 cut(s)	589
Ecl136II	GAGCTC	1 cut(s)	214
EclXI	CGGCCG	1 cut(s)	589
Eco130I	CCWWGG	2 cut(s)	47, 157
Eco24I	GRGCYC	2 cut(s)	216, 245
Eco32I	GATATC	1 cut(s)	496
Eco47I	GGWCC	1 cut(s)	677
Eco52I	CGGCCG	1 cut(s)	589
Eco53kI	GAGCTC	1 cut(s)	214
Eco57I	CTGAAG	1 cut(s)	699
Eco88I	CYCGRG	1 cut(s)	28
EcoICRI	GAGCTC	1 cut(s)	214
EcoRI	GAATTC	1 cut(s)	740
EcoRV	GATATC	1 cut(s)	496
EcoT14I	CCWWGG	2 cut(s)	47, 157
EcoT22I	ATGCAT	1 cut(s)	116
EcoT38I	GRGCYC	2 cut(s)	216, 245
ErhI	CCWWGG	2 cut(s)	47, 157
FaeI	CATG	6 cut(s)	51, 114, 264, 308, 421, 748
FalI	AAGNNNNNCTT	2 cut(s)	309, 341
FatI	CATG	6 cut(s)	47, 110, 260, 304, 417, 744
FbaI	TGATCA	1 cut(s)	301
FblI	GTMKAC	1 cut(s)	152
Fnu4HI	GCNGC	3 cut(s)	96, 267, 589
FokI	GGATG	4 cut(s)	101, 467, 562, 645
FriOI	GRGCYC	2 cut(s)	216, 245
Fsp4HI	GCNGC	3 cut(s)	96, 267, 589
FspBI	CTAG	1 cut(s)	872
FspI	TGCGCA	1 cut(s)	259
GlaI	GCGC	1 cut(s)	259
GluI	GCNGC	3 cut(s)	96, 267, 589
GsuI	CTGGAG	2 cut(s)	219, 822
HaeIII	GGCC	2 cut(s)	556, 591
HhaI	GCGC	1 cut(s)	260
Hin1II	CATG	6 cut(s)	51, 114, 264, 308, 421, 748
Hin6I	GCGC	1 cut(s)	258
HinP1I	GCGC	1 cut(s)	258
HindIII	AAGCTT	1 cut(s)	294
HinfI	GANTC	1 cut(s)	201
HphI	GGTGA	1 cut(s)	292
Hpy166II	GTNNAC	2 cut(s)	153, 437
Hpy188I	TCNGA	2 cut(s)	131, 718
Hpy188III	TCNNGA	3 cut(s)	372, 675, 882
Hpy8I	GTNNAC	2 cut(s)	153, 437
HpyAV	CCTTC	2 cut(s)	623, 693
HpyCH4III	ACNGT	3 cut(s)	103, 191, 487
HpyCH4IV	ACGT	1 cut(s)	336
HpyCH4V	TGCA	7 cut(s)	110, 114, 410, 530, 642, 658, 826
HpyF10VI	GCNNNNNNNGC	2 cut(s)	266, 655
HpyF3I	CTNAG	2 cut(s)	270, 351
HpySE526I	ACGT	1 cut(s)	336
Hsp92II	CATG	6 cut(s)	51, 114, 264, 308, 421, 748
HspAI	GCGC	1 cut(s)	258
Ksp22I	TGATCA	1 cut(s)	301
Kzo9I	GATC	3 cut(s)	301, 478, 561
LmnI	GCTCC	2 cut(s)	240, 841
Lsp1109I	GCAGC	2 cut(s)	107, 278
LweI	GCATC	4 cut(s)	123, 539, 667, 678
MaeI	CTAG	1 cut(s)	872
MaeII	ACGT	1 cut(s)	336
MaeIII	GTNAC	3 cut(s)	332, 463, 570
MalI	GATC	3 cut(s)	303, 480, 563
MboI	GATC	3 cut(s)	301, 478, 561
MboII	GAAGA	2 cut(s)	705, 749
MfeI	CAATTG	1 cut(s)	411
MhlI	GDGCHC	2 cut(s)	216, 245
MluCI	AATT	5 cut(s)	77, 222, 357, 411, 740
MlyI	GAGTC	1 cut(s)	210
MmeI	TCCRAC	1 cut(s)	506
MnlI	CCTC	5 cut(s)	37, 54, 336, 694, 773
Mph1103I	ATGCAT	1 cut(s)	116
MseI	TTAA	2 cut(s)	803, 861
MslI	CAYNNNNRTG	1 cut(s)	521
MspA1I	CMGCKG	1 cut(s)	197
MunI	CAATTG	1 cut(s)	411
Mva1269I	GAATGC	1 cut(s)	427
MvnI	CGCG	1 cut(s)	731
MwoI	GCNNNNNNNGC	2 cut(s)	266, 655
NcoI	CCATGG	1 cut(s)	47
NdeII	GATC	3 cut(s)	301, 478, 561
NlaIII	CATG	6 cut(s)	51, 114, 264, 308, 421, 748
NlaIV	GGNNCC	2 cut(s)	242, 555
NmuCI	GTSAC	3 cut(s)	332, 463, 570
NsbI	TGCGCA	1 cut(s)	259
NsiI	ATGCAT	1 cut(s)	116
NspI	RCATGY	1 cut(s)	114
OliI	CACNNNNGTG	1 cut(s)	521
PaeI	GCATGC	1 cut(s)	114
PaeR7I	CTCGAG	1 cut(s)	28
PctI	GAATGC	1 cut(s)	427
PkrI	GCNGC	3 cut(s)	97, 268, 590
PleI	GAGTC	1 cut(s)	209
PpsI	GAGTC	1 cut(s)	209
Psp124BI	GAGCTC	1 cut(s)	216
PspN4I	GGNNCC	2 cut(s)	242, 555
PspPI	GGNCC	2 cut(s)	554, 677
PspXI	VCTCGAGB	1 cut(s)	28
PstNI	CAGNNNCTG	1 cut(s)	101
PvuII	CAGCTG	1 cut(s)	197
RsaI	GTAC	2 cut(s)	595, 623
RsaNI	GTAC	2 cut(s)	594, 622
RseI	CAYNNNNRTG	1 cut(s)	521
SacI	GAGCTC	1 cut(s)	216
SaqAI	TTAA	2 cut(s)	803, 861
SatI	GCNGC	3 cut(s)	96, 267, 589
Sau3AI	GATC	3 cut(s)	301, 478, 561
Sau96I	GGNCC	2 cut(s)	554, 677
ScaI	AGTACT	1 cut(s)	623
SchI	GAGTC	1 cut(s)	210
SduI	GDGCHC	2 cut(s)	216, 245
SfaNI	GCATC	4 cut(s)	123, 539, 667, 678
Sfr274I	CTCGAG	1 cut(s)	28
SinI	GGWCC	1 cut(s)	677
SlaI	CTCGAG	1 cut(s)	28
SmiMI	CAYNNNNRTG	1 cut(s)	521
SmlI	CTYRAG	2 cut(s)	28, 617
SmoI	CTYRAG	2 cut(s)	28, 617
SphI	GCATGC	1 cut(s)	114
Sse9I	AATT	5 cut(s)	77, 222, 357, 411, 740
SsiI	CCGC	1 cut(s)	588
SspI	AATATT	3 cut(s)	394, 538, 602
SspMI	CTAG	1 cut(s)	872
SstI	GAGCTC	1 cut(s)	216
StyI	CCWWGG	2 cut(s)	47, 157
TaaI	ACNGT	3 cut(s)	103, 191, 487
TaiI	ACGT	1 cut(s)	339
TaqI	TCGA	2 cut(s)	29, 686
TasI	AATT	5 cut(s)	77, 222, 357, 411, 740
TatI	WGTACW	1 cut(s)	621
TauI	GCSGC	1 cut(s)	591
Tru1I	TTAA	2 cut(s)	803, 861
Tru9I	TTAA	2 cut(s)	803, 861
TscAI	CASTG	2 cut(s)	70, 660
TseFI	GTSAC	3 cut(s)	332, 463, 570
TseI	GCWGC	2 cut(s)	95, 266
Tsp45I	GTSAC	3 cut(s)	332, 463, 570
TspDTI	ATGAA	5 cut(s)	32, 306, 434, 733, 833
TspRI	CASTG	2 cut(s)	70, 660
VpaK11BI	GGWCC	1 cut(s)	677
XapI	RAATTY	1 cut(s)	740
XceI	RCATGY	1 cut(s)	114
XhoI	CTCGAG	1 cut(s)	28
XmiI	GTMKAC	1 cut(s)	152
XspI	CTAG	1 cut(s)	872
ZrmI	AGTACT	1 cut(s)	623
Zsp2I	ATGCAT	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.