Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0006342

Physical Location & Seq

Genomic Coordinates Reverse (-)

9451280 .. 9453791

Gene Structure 2512 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1129300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGGTTTTGGAGAGACAAAATGTTCCTACGGCAAGCCTCCGTGGATATTCAAAGGCAGCGCGTTGTATCAACTCCATCTTGTCAAAGCAGCAACTGTCCGAGCATGCATTCCGAAAGATTTCAGATTAGTTGAAGCATTTGGGTATACTCTTGGCGGCTTCTTTCTTGCCAACTATGATGACAGTCCAGCAGGAGTCTTTGATGAGCTCGTTGTGATTGCTGGACTTGTATGGAGCCCTCCAACGTCTTGCGCCTGGGCAGCTAAGGTGCTTGTGAATAGTGATGAAGCTTGTAAACATGGACGAAAGGAAGTAGGGCTTCCAAGTCAAGTTGCGAGGTTTTCAAAGAGGATTACAGCAGTTTCAAGGCAACCAAAGAGCAAAAATATTGGATTTCTTAATGTAAATGGTAGCAGTGCTGCCTTCTGTGATTCAAAAGATTCTATGGAAGTTCAAGTGACCGAAATCAAGGCTTCGTCGGTTAAAGATTCCTGTAATGTCAACCTTACCACTTTCATGCCTGAATCGAGTGGTGAGTTGAGGGGGCCGACGATCAAAATATCACTTCCAAGTTTTAGCGGCGGCACAGAATATTATCCCAACCTTCTCAAGTACTCTTGCCGGATCGAGTGCAGGGTACGAGCAGTGCATCCGGCAAAAGTATCAGGACCATCTCTGATGCCAATGAATGAGACCAAACAATCTTCAGAAATCCATACTAGCAATGCAAAGAACCACGCAACTGAAGAATTTGTGGATAAATGCAACCTCCTCTGGGAATCTGTGATGTTATCCAAGCCTGTATTGGCATTGGAGTTCAGTTGTATGAAAATGCAGGTTGAAGCTCCAGTTGTAGTTTCCAACTGTAAGAACTCTTTAGCAACCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016122 GO:0016123 GO:0042440 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0046148 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADC

Protein Analysis

297

Amino Acids

32.26

Weight (kDa)

8.69

Isoelectric Point (pI)

51.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006342)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28100 AT1G28100 AT1G28100 AT1G28100 AT1G28100 AT1G28100
fragaria_vesca	FvH4_4g22830 FvH4_4g22830
malus_domestica	MD13G1129300.v1.1 MD16G1129300.v1.1
prunus_persica	Prupe.1G217100_v2.0.a1 Prupe.1G217100_v2.0.a1 Prupe.1G217100_v2.0.a1
pyrus_communis	pycom13g11230 pycom16g10960
rosa_chinensis	RchiOBHm_Chr4g0429061
rosa_laevigata	RLG00000007100
rosa_multiflora	Rmu_sc0008629.1_g000020
rosa_roxburghii	Rroxscaffold_5G00370700
rosa_rugosa	Rorug04G0232400 Rorug04G0232500 Rorug04G0232600
rosa_samantha	Rh4AG288400 Rh4BG294600 Rh4CG310100 Rh4DG291500
rosa_wichuraiana	Rw4G025000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	826
AccI	GTMKAC	1 cut(s)	146
AccII	CGCG	1 cut(s)	62
AciI	CCGC	3 cut(s)	156, 579, 582
AclWI	GGATC	1 cut(s)	632
AcsI	RAATTY	1 cut(s)	749
AcuI	CTGAAG	2 cut(s)	690, 765
AfaI	GTAC	2 cut(s)	614, 639
AfiI	CCNNNNNNNGG	1 cut(s)	775
AgsI	TTSAA	7 cut(s)	52, 134, 345, 366, 435, 455, 842
AjnI	CCWGG	1 cut(s)	254
AluBI	AGCT	4 cut(s)	208, 263, 290, 845
AluI	AGCT	4 cut(s)	208, 263, 290, 845
Alw21I	GWGCWC	1 cut(s)	210
Alw26I	GTCTC	2 cut(s)	8, 686
AlwI	GGATC	1 cut(s)	632
AlwNI	CAGNNNCTG	1 cut(s)	95
AoxI	GGCC	1 cut(s)	545
ApeKI	GCWGC	4 cut(s)	57, 89, 260, 419
ApoI	RAATTY	1 cut(s)	749
Asp700I	GAANNNNTTC	1 cut(s)	119
AspLEI	GCGC	2 cut(s)	62, 254
AspS9I	GGNCC	2 cut(s)	545, 668
AsuHPI	GGTGA	1 cut(s)	545
AvaII	GGWCC	1 cut(s)	668
BanII	GRGCYC	2 cut(s)	210, 239
Bbv12I	GWGCWC	1 cut(s)	210
BbvI	GCAGC	4 cut(s)	69, 101, 272, 406
BccI	CCATC	2 cut(s)	84, 679
BceAI	ACGGC	1 cut(s)	46
BciT130I	CCWGG	1 cut(s)	256
BcoDI	GTCTC	2 cut(s)	8, 686
BfaI	CTAG	1 cut(s)	720
BfuAI	ACCTGC	1 cut(s)	826
BisI	GCNGC	7 cut(s)	58, 90, 157, 261, 420, 580, 583
BlsI	GCNGC	7 cut(s)	59, 91, 158, 262, 421, 581, 584
BmcAI	AGTACT	1 cut(s)	614
Bme1390I	CCNGG	1 cut(s)	256
Bme18I	GGWCC	1 cut(s)	668
BmgT120I	GGNCC	2 cut(s)	545, 668
BmiI	GGNNCC	2 cut(s)	236, 546
BmrFI	CCNGG	1 cut(s)	256
BmsI	GCATC	2 cut(s)	658, 669
BpmI	CTGGAG	1 cut(s)	831
Bpu10I	CCTNAGC	1 cut(s)	264
BpuEI	CTTGAG	1 cut(s)	593
BsaI	GGTCTC	1 cut(s)	686
BsaJI	CCNNGG	2 cut(s)	41, 255
Bsc4I	CCNNNNNNNGG	1 cut(s)	775
Bse1I	ACTGG	1 cut(s)	848
Bse3DI	GCAATG	1 cut(s)	730
BseBI	CCWGG	1 cut(s)	256
BseDI	CCNNGG	2 cut(s)	41, 255
BseGI	GGATG	1 cut(s)	649
BseLI	CCNNNNNNNGG	1 cut(s)	775
BseMI	GCAATG	1 cut(s)	730
BseNI	ACTGG	1 cut(s)	848
BseRI	GAGGAG	1 cut(s)	761
BseXI	GCAGC	4 cut(s)	69, 101, 272, 406
BsgI	GTGCAG	1 cut(s)	652
Bsh1236I	CGCG	1 cut(s)	62
BshFI	GGCC	1 cut(s)	547
BsiHKAI	GWGCWC	1 cut(s)	210
BsiSI	CCGG	2 cut(s)	622, 653
BslI	CCNNNNNNNGG	1 cut(s)	775
BsmAI	GTCTC	2 cut(s)	8, 686
BsmI	GAATGC	1 cut(s)	108
BsnI	GGCC	1 cut(s)	547
Bso31I	GGTCTC	1 cut(s)	686
Bsp1286I	GDGCHC	2 cut(s)	210, 239
Bsp143I	GATC	2 cut(s)	552, 624
BspACI	CCGC	3 cut(s)	156, 579, 582
BspANI	GGCC	1 cut(s)	547
BspFNI	CGCG	1 cut(s)	62
BspLI	GGNNCC	2 cut(s)	236, 546
BspMI	ACCTGC	1 cut(s)	826
BspPI	GGATC	1 cut(s)	632
BspTNI	GGTCTC	1 cut(s)	686
BsrDI	GCAATG	1 cut(s)	730
BsrI	ACTGG	1 cut(s)	848
BssECI	CCNNGG	2 cut(s)	41, 255
BssMI	GATC	2 cut(s)	552, 624
BssNAI	GTATAC	1 cut(s)	147
Bst1107I	GTATAC	1 cut(s)	147
Bst2UI	CCWGG	1 cut(s)	256
Bst4CI	ACNGT	3 cut(s)	97, 185, 866
BstC8I	GCNNGC	2 cut(s)	35, 106
BstDEI	CTNAG	1 cut(s)	264
BstDSI	CCRYGG	1 cut(s)	41
BstF5I	GGATG	1 cut(s)	649
BstFNI	CGCG	1 cut(s)	62
BstHHI	GCGC	2 cut(s)	62, 254
BstKTI	GATC	2 cut(s)	555, 627
BstMAI	GTCTC	2 cut(s)	8, 686
BstMBI	GATC	2 cut(s)	552, 624
BstMWI	GCNNNNNNNGC	1 cut(s)	260
BstNI	CCWGG	1 cut(s)	256
BstNSI	RCATGY	1 cut(s)	108
BstSCI	CCNGG	1 cut(s)	254
BstUI	CGCG	1 cut(s)	62
BstV1I	GCAGC	4 cut(s)	69, 101, 272, 406
BstZ17I	GTATAC	1 cut(s)	147
BsuRI	GGCC	1 cut(s)	547
BtgI	CCRYGG	1 cut(s)	41
BtsCI	GGATG	1 cut(s)	649
BtsI	GCAGTG	2 cut(s)	421, 651
BtsIMutI	CAGTG	2 cut(s)	421, 651
BveI	ACCTGC	1 cut(s)	826
Cac8I	GCNNGC	2 cut(s)	35, 106
CaiI	CAGNNNCTG	1 cut(s)	95
CfoI	GCGC	2 cut(s)	62, 254
Cfr13I	GGNCC	2 cut(s)	545, 668
Csp6I	GTAC	2 cut(s)	613, 638
CviAII	CATG	3 cut(s)	105, 299, 517
CviQI	GTAC	2 cut(s)	613, 638
DdeI	CTNAG	1 cut(s)	264
DpnI	GATC	2 cut(s)	554, 626
DpnII	GATC	2 cut(s)	552, 624
Ecl136II	GAGCTC	1 cut(s)	208
Eco24I	GRGCYC	2 cut(s)	210, 239
Eco31I	GGTCTC	1 cut(s)	686
Eco47I	GGWCC	1 cut(s)	668
Eco53kI	GAGCTC	1 cut(s)	208
Eco57I	CTGAAG	2 cut(s)	690, 765
EcoICRI	GAGCTC	1 cut(s)	208
EcoRII	CCWGG	1 cut(s)	254
EcoT22I	ATGCAT	1 cut(s)	110
EcoT38I	GRGCYC	2 cut(s)	210, 239
FaeI	CATG	3 cut(s)	108, 302, 520
FaiI	YATR	9 cut(s)	106, 147, 177, 232, 300, 446, 518, 717, 827
FalI	AAGNNNNNCTT	2 cut(s)	303, 335
FatI	CATG	3 cut(s)	104, 298, 516
FblI	GTMKAC	1 cut(s)	146
Fnu4HI	GCNGC	7 cut(s)	58, 90, 157, 261, 420, 580, 583
FokI	GGATG	1 cut(s)	636
FriOI	GRGCYC	2 cut(s)	210, 239
Fsp4HI	GCNGC	7 cut(s)	58, 90, 157, 261, 420, 580, 583
FspBI	CTAG	1 cut(s)	720
GlaI	GCGC	2 cut(s)	61, 253
GluI	GCNGC	7 cut(s)	58, 90, 157, 261, 420, 580, 583
GsuI	CTGGAG	1 cut(s)	831
HaeIII	GGCC	1 cut(s)	547
HapII	CCGG	2 cut(s)	622, 653
HhaI	GCGC	2 cut(s)	62, 254
Hin1II	CATG	3 cut(s)	108, 302, 520
Hin6I	GCGC	2 cut(s)	60, 252
HinP1I	GCGC	2 cut(s)	60, 252
HincII	GTYRAC	1 cut(s)	502
HindII	GTYRAC	1 cut(s)	502
HindIII	AAGCTT	1 cut(s)	288
HinfI	GANTC	6 cut(s)	195, 431, 440, 488, 524, 779
HpaII	CCGG	2 cut(s)	622, 653
HphI	GGTGA	1 cut(s)	545
Hpy166II	GTNNAC	3 cut(s)	147, 296, 502
Hpy188I	TCNGA	5 cut(s)	101, 114, 125, 678, 709
Hpy188III	TCNNGA	1 cut(s)	666
Hpy8I	GTNNAC	3 cut(s)	147, 296, 502
Hpy99I	CGWCG	2 cut(s)	481, 553
HpyAV	CCTTC	2 cut(s)	433, 614
HpyCH4III	ACNGT	3 cut(s)	97, 185, 866
HpyCH4IV	ACGT	1 cut(s)	245
HpyCH4V	TGCA	6 cut(s)	108, 633, 649, 728, 765, 835
HpyF10VI	GCNNNNNNNGC	1 cut(s)	260
HpyF3I	CTNAG	1 cut(s)	264
HpySE526I	ACGT	1 cut(s)	245
Hsp92II	CATG	3 cut(s)	108, 302, 520
HspAI	GCGC	2 cut(s)	60, 252
Kzo9I	GATC	2 cut(s)	552, 624
LmnI	GCTCC	2 cut(s)	234, 850
Lsp1109I	GCAGC	4 cut(s)	69, 101, 272, 406
LweI	GCATC	2 cut(s)	658, 669
MaeI	CTAG	1 cut(s)	720
MaeII	ACGT	1 cut(s)	245
MaeIII	GTNAC	1 cut(s)	457
MalI	GATC	2 cut(s)	554, 626
MboI	GATC	2 cut(s)	552, 624
MboII	GAAGA	2 cut(s)	696, 758
MhlI	GDGCHC	2 cut(s)	210, 239
MluCI	AATT	1 cut(s)	749
MlyI	GAGTC	1 cut(s)	204
MmeI	TCCRAC	2 cut(s)	266, 885
MnlI	CCTC	7 cut(s)	48, 249, 330, 342, 534, 779, 782
Mph1103I	ATGCAT	1 cut(s)	110
MroXI	GAANNNNTTC	1 cut(s)	119
MseI	TTAA	2 cut(s)	399, 483
MslI	CAYNNNNRTG	1 cut(s)	515
MspI	CCGG	2 cut(s)	622, 653
MspR9I	CCNGG	1 cut(s)	256
Mva1269I	GAATGC	1 cut(s)	108
MvaI	CCWGG	1 cut(s)	256
MvnI	CGCG	1 cut(s)	62
MwoI	GCNNNNNNNGC	1 cut(s)	260
NdeII	GATC	2 cut(s)	552, 624
NlaIII	CATG	3 cut(s)	108, 302, 520
NlaIV	GGNNCC	2 cut(s)	236, 546
NmuCI	GTSAC	1 cut(s)	457
NsiI	ATGCAT	1 cut(s)	110
NspI	RCATGY	1 cut(s)	108
PaeI	GCATGC	1 cut(s)	108
PctI	GAATGC	1 cut(s)	108
PdmI	GAANNNNTTC	1 cut(s)	119
PfeI	GAWTC	5 cut(s)	431, 440, 488, 524, 779
PkrI	GCNGC	7 cut(s)	59, 91, 158, 262, 421, 581, 584
PleI	GAGTC	1 cut(s)	203
PpsI	GAGTC	1 cut(s)	203
Psp124BI	GAGCTC	1 cut(s)	210
Psp6I	CCWGG	1 cut(s)	254
PspGI	CCWGG	1 cut(s)	254
PspN4I	GGNNCC	2 cut(s)	236, 546
PspPI	GGNCC	2 cut(s)	545, 668
PstNI	CAGNNNCTG	1 cut(s)	95
RsaI	GTAC	2 cut(s)	614, 639
RsaNI	GTAC	2 cut(s)	613, 638
RseI	CAYNNNNRTG	1 cut(s)	515
SacI	GAGCTC	1 cut(s)	210
SaqAI	TTAA	2 cut(s)	399, 483
SatI	GCNGC	7 cut(s)	58, 90, 157, 261, 420, 580, 583
Sau3AI	GATC	2 cut(s)	552, 624
Sau96I	GGNCC	2 cut(s)	545, 668
ScaI	AGTACT	1 cut(s)	614
SchI	GAGTC	1 cut(s)	204
ScrFI	CCNGG	1 cut(s)	256
SduI	GDGCHC	2 cut(s)	210, 239
SfaNI	GCATC	2 cut(s)	658, 669
SinI	GGWCC	1 cut(s)	668
SmiMI	CAYNNNNRTG	1 cut(s)	515
SmlI	CTYRAG	1 cut(s)	608
SmoI	CTYRAG	1 cut(s)	608
SphI	GCATGC	1 cut(s)	108
Sse9I	AATT	1 cut(s)	749
SsiI	CCGC	3 cut(s)	156, 579, 582
SspI	AATATT	2 cut(s)	388, 593
SspMI	CTAG	1 cut(s)	720
SstI	GAGCTC	1 cut(s)	210
StyD4I	CCNGG	1 cut(s)	254
TaaI	ACNGT	3 cut(s)	97, 185, 866
TaiI	ACGT	1 cut(s)	248
TaqI	TCGA	2 cut(s)	527, 627
TaqII	GACCGA	1 cut(s)	476
TasI	AATT	1 cut(s)	749
TatI	WGTACW	1 cut(s)	612
TauI	GCSGC	3 cut(s)	159, 582, 585
TfiI	GAWTC	5 cut(s)	431, 440, 488, 524, 779
Tru1I	TTAA	2 cut(s)	399, 483
Tru9I	TTAA	2 cut(s)	399, 483
TscAI	CASTG	2 cut(s)	421, 651
TseFI	GTSAC	1 cut(s)	457
TseI	GCWGC	4 cut(s)	57, 89, 260, 419
Tsp45I	GTSAC	1 cut(s)	457
TspDTI	ATGAA	4 cut(s)	300, 505, 701, 842
TspGWI	ACGGA	1 cut(s)	30
TspRI	CASTG	2 cut(s)	421, 651
VpaK11BI	GGWCC	1 cut(s)	668
XapI	RAATTY	1 cut(s)	749
XceI	RCATGY	1 cut(s)	108
XcmI	CCANNNNNNNNNTGG	1 cut(s)	802
XmiI	GTMKAC	1 cut(s)	146
XmnI	GAANNNNTTC	1 cut(s)	119
XspI	CTAG	1 cut(s)	720
ZrmI	AGTACT	1 cut(s)	614
Zsp2I	ATGCAT	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.