Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0006342

Physical Location & Seq

Genomic Coordinates Forward (+)

52371910 .. 52376294

Gene Structure 4385 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00370700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGATGTGGGAGAAGCAAAATGTTCCTTCAAGTACGGCAAGCCTCCGTGGATTTTCAAAGGCAGAGCATTGTATCAACTCCATTTGGTCAAGGCAGCGACTATTCGAGCATGCATCCCTAAAGAGTTCAGATTGGTTGAAGCATTTGGATATACTCTTGGCGGGTTTTTTCTTGCTAACTATGATGACAGCCCAGCTGGAGTCTTGGATGAGCTTGTTGTGATTGCTGGACTTATATGGAGCCCTCCAACGTCTTGCGCATGGGCAGCAAAGGTACTTGTGAATAGCAAAGAAGCTTGTGATCATGGGCGAAAGGAAGTAGGCCTTCCAAGTCAAGTTGCAAGGTTTTCTAAGAGAATTACAGCAGTTTCAAGGAAACCAAAGACCAAACAAAGTGAATTTCTAAACTTAATTGGTATGAAGGGTGGTTTCTCTGATCCAGGAGAGCAGGTGAATGTTCAAGTGACTGAAATCATTGCTCAATCCTCAAAAGATACCTGTAATATCAACCTTACCACTTTCGTGCCTGCATTGGACATTAACAAGTGGATGGGACCAGCAATCAAAATGTCACTTCCAAGTTTTAGCGGTCGTACAGAGTATTATCCTGACCTTCTTAAGTACTCTTGCCAGATCGACTGCAGGGTGCGAGTAGTGCATCCAGCCAAAGTATCGTGGCCATCTCCTGTGCCATCGAATGAGAACGAGAACGAACAATGTTCAGAAATTCATAGTTGCAATACGCAGAATCAAACAACTAAAGAATTCATGGACAATGAGCAGAACCTTACCAGAGCCGTGATGCTATCAAAGCCCATTTTGGCATTGGAGTTCAGTTCTATGAAAATGCAGGTTGAAGCTCCGGTTGTAGTTTCCAACCACTTTAAGAACTCTTTAGCAACCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

302

Amino Acids

33.47

Weight (kDa)

8.65

Isoelectric Point (pI)

44.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006342)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28100 AT1G28100 AT1G28100 AT1G28100 AT1G28100 AT1G28100
fragaria_vesca	FvH4_4g22830 FvH4_4g22830
malus_domestica	MD13G1129300.v1.1 MD16G1129300.v1.1
prunus_persica	Prupe.1G217100_v2.0.a1 Prupe.1G217100_v2.0.a1 Prupe.1G217100_v2.0.a1
pyrus_communis	pycom13g11230 pycom16g10960
rosa_chinensis	RchiOBHm_Chr4g0429061
rosa_laevigata	RLG00000007100
rosa_multiflora	Rmu_sc0008629.1_g000020
rosa_roxburghii	Rroxscaffold_5G00370700
rosa_rugosa	Rorug04G0232400 Rorug04G0232500 Rorug04G0232600
rosa_samantha	Rh4AG288400 Rh4BG294600 Rh4CG310100 Rh4DG291500
rosa_wichuraiana	Rw4G025000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	439
Acc16I	TGCGCA	1 cut(s)	259
Acc36I	ACCTGC	2 cut(s)	439, 841
AciI	CCGC	2 cut(s)	162, 588
AclWI	GGATC	1 cut(s)	431
AcoI	YGGCCR	1 cut(s)	677
AcsI	RAATTY	3 cut(s)	398, 726, 764
AfaI	GTAC	4 cut(s)	35, 276, 595, 623
AflII	CTTAAG	1 cut(s)	617
AgsI	TTSAA	6 cut(s)	31, 58, 140, 372, 461, 857
AjnI	CCWGG	1 cut(s)	439
AleI	CACNNNNGTG	1 cut(s)	521
AluBI	AGCT	4 cut(s)	197, 214, 296, 860
AluI	AGCT	4 cut(s)	197, 214, 296, 860
AlwI	GGATC	1 cut(s)	431
AoxI	GGCC	2 cut(s)	322, 677
ApeKI	GCWGC	2 cut(s)	95, 266
ApoI	RAATTY	3 cut(s)	398, 726, 764
AspLEI	GCGC	1 cut(s)	260
AspS9I	GGNCC	1 cut(s)	554
AsuHPI	GGTGA	1 cut(s)	463
AvaII	GGWCC	1 cut(s)	554
BalI	TGGCCA	1 cut(s)	679
BanII	GRGCYC	1 cut(s)	245
BbvI	GCAGC	2 cut(s)	107, 278
BccI	CCATC	3 cut(s)	544, 688, 700
BceAI	ACGGC	2 cut(s)	52, 782
BciT130I	CCWGG	1 cut(s)	441
BclI	TGATCA	1 cut(s)	301
BfmI	CTRYAG	1 cut(s)	640
BfrI	CTTAAG	1 cut(s)	617
BfuAI	ACCTGC	2 cut(s)	439, 841
BisI	GCNGC	2 cut(s)	96, 267
BlsI	GCNGC	2 cut(s)	97, 268
BmcAI	AGTACT	1 cut(s)	623
Bme1390I	CCNGG	1 cut(s)	441
Bme18I	GGWCC	1 cut(s)	554
BmgT120I	GGNCC	1 cut(s)	554
BmiI	GGNNCC	2 cut(s)	242, 555
BmrFI	CCNGG	1 cut(s)	441
BmsI	GCATC	3 cut(s)	123, 667, 792
BpmI	CTGGAG	1 cut(s)	219
BsaJI	CCNNGG	1 cut(s)	47
BsaWI	WCCGGW	1 cut(s)	862
BsaXI	ACNNNNNCTCC	2 cut(s)	435, 465
Bse3DI	GCAATG	1 cut(s)	474
BseBI	CCWGG	1 cut(s)	441
BseDI	CCNNGG	1 cut(s)	47
BseGI	GGATG	5 cut(s)	10, 114, 214, 555, 658
BseMI	GCAATG	1 cut(s)	474
BseXI	GCAGC	2 cut(s)	107, 278
BseYI	CCCAGC	1 cut(s)	193
Bsh1285I	CGRYCG	1 cut(s)	592
BshFI	GGCC	2 cut(s)	324, 679
BsiEI	CGRYCG	1 cut(s)	592
BsiSI	CCGG	1 cut(s)	863
BslFI	GGGAC	1 cut(s)	567
BsmFI	GGGAC	1 cut(s)	567
BsnI	GGCC	2 cut(s)	324, 679
Bsp1286I	GDGCHC	1 cut(s)	245
Bsp143I	GATC	3 cut(s)	301, 436, 633
BspACI	CCGC	2 cut(s)	162, 588
BspANI	GGCC	2 cut(s)	324, 679
BspLI	GGNNCC	2 cut(s)	242, 555
BspMAI	CTGCAG	1 cut(s)	644
BspMI	ACCTGC	2 cut(s)	439, 841
BspPI	GGATC	1 cut(s)	431
BspTI	CTTAAG	1 cut(s)	617
BsrDI	GCAATG	1 cut(s)	474
BssECI	CCNNGG	1 cut(s)	47
BssMI	GATC	3 cut(s)	301, 436, 633
Bst2UI	CCWGG	1 cut(s)	441
BstAFI	CTTAAG	1 cut(s)	617
BstC8I	GCNNGC	3 cut(s)	41, 112, 528
BstDEI	CTNAG	1 cut(s)	351
BstDSI	CCRYGG	1 cut(s)	47
BstF5I	GGATG	5 cut(s)	10, 114, 214, 555, 658
BstHHI	GCGC	1 cut(s)	260
BstKTI	GATC	3 cut(s)	304, 439, 636
BstMBI	GATC	3 cut(s)	301, 436, 633
BstMCI	CGRYCG	1 cut(s)	592
BstMWI	GCNNNNNNNGC	3 cut(s)	266, 655, 811
BstNI	CCWGG	1 cut(s)	441
BstNSI	RCATGY	1 cut(s)	114
BstSCI	CCNGG	1 cut(s)	439
BstSFI	CTRYAG	1 cut(s)	640
BstV1I	GCAGC	2 cut(s)	107, 278
BsuRI	GGCC	2 cut(s)	324, 679
BtgI	CCRYGG	1 cut(s)	47
BtsCI	GGATG	5 cut(s)	10, 114, 214, 555, 658
BveI	ACCTGC	2 cut(s)	439, 841
Cac8I	GCNNGC	3 cut(s)	41, 112, 528
CfoI	GCGC	1 cut(s)	260
Cfr13I	GGNCC	1 cut(s)	554
Csp6I	GTAC	4 cut(s)	34, 275, 594, 622
CviAII	CATG	4 cut(s)	111, 261, 305, 769
CviQI	GTAC	4 cut(s)	34, 275, 594, 622
DdeI	CTNAG	1 cut(s)	351
DpnI	GATC	3 cut(s)	303, 438, 635
DpnII	GATC	3 cut(s)	301, 436, 633
EaeI	YGGCCR	1 cut(s)	677
Eco147I	AGGCCT	1 cut(s)	324
Eco24I	GRGCYC	1 cut(s)	245
Eco47I	GGWCC	1 cut(s)	554
EcoRI	GAATTC	1 cut(s)	764
EcoRII	CCWGG	1 cut(s)	439
EcoT22I	ATGCAT	1 cut(s)	116
EcoT38I	GRGCYC	1 cut(s)	245
FaeI	CATG	4 cut(s)	114, 264, 308, 772
FalI	AAGNNNNNCTT	2 cut(s)	309, 341
FaqI	GGGAC	1 cut(s)	567
FatI	CATG	4 cut(s)	110, 260, 304, 768
FauI	CCCGC	1 cut(s)	155
FbaI	TGATCA	1 cut(s)	301
Fnu4HI	GCNGC	2 cut(s)	96, 267
FokI	GGATG	5 cut(s)	17, 101, 221, 562, 645
FriOI	GRGCYC	1 cut(s)	245
Fsp4HI	GCNGC	2 cut(s)	96, 267
FspI	TGCGCA	1 cut(s)	259
GlaI	GCGC	1 cut(s)	259
GluI	GCNGC	2 cut(s)	96, 267
GsaI	CCCAGC	1 cut(s)	197
GsuI	CTGGAG	1 cut(s)	219
HaeIII	GGCC	2 cut(s)	324, 679
HapII	CCGG	1 cut(s)	863
HhaI	GCGC	1 cut(s)	260
Hin1II	CATG	4 cut(s)	114, 264, 308, 772
Hin6I	GCGC	1 cut(s)	258
HinP1I	GCGC	1 cut(s)	258
HindIII	AAGCTT	1 cut(s)	294
HinfI	GANTC	2 cut(s)	201, 748
HpaII	CCGG	1 cut(s)	863
HphI	GGTGA	1 cut(s)	463
Hpy188I	TCNGA	3 cut(s)	131, 436, 724
Hpy188III	TCNNGA	1 cut(s)	608
HpyAV	CCTTC	4 cut(s)	37, 335, 415, 623
HpyCH4IV	ACGT	1 cut(s)	251
HpyCH4V	TGCA	7 cut(s)	114, 341, 530, 642, 658, 738, 850
HpyF10VI	GCNNNNNNNGC	3 cut(s)	266, 655, 811
HpyF3I	CTNAG	1 cut(s)	351
HpySE526I	ACGT	1 cut(s)	251
Hsp92II	CATG	4 cut(s)	114, 264, 308, 772
HspAI	GCGC	1 cut(s)	258
Ksp22I	TGATCA	1 cut(s)	301
Kzo9I	GATC	3 cut(s)	301, 436, 633
LmnI	GCTCC	2 cut(s)	240, 865
Lsp1109I	GCAGC	2 cut(s)	107, 278
LweI	GCATC	3 cut(s)	123, 667, 792
MaeII	ACGT	1 cut(s)	251
MaeIII	GTNAC	2 cut(s)	463, 570
MalI	GATC	3 cut(s)	303, 438, 635
MboI	GATC	3 cut(s)	301, 436, 633
MhlI	GDGCHC	1 cut(s)	245
MlsI	TGGCCA	1 cut(s)	679
MluCI	AATT	5 cut(s)	357, 398, 411, 726, 764
MluNI	TGGCCA	1 cut(s)	679
MlyI	GAGTC	1 cut(s)	210
MmeI	TCCRAC	2 cut(s)	272, 900
MnlI	CCTC	3 cut(s)	54, 255, 496
Mox20I	TGGCCA	1 cut(s)	679
Mph1103I	ATGCAT	1 cut(s)	116
MscI	TGGCCA	1 cut(s)	679
MseI	TTAA	5 cut(s)	410, 540, 618, 885, 907
MslI	CAYNNNNRTG	1 cut(s)	521
Msp20I	TGGCCA	1 cut(s)	679
MspA1I	CMGCKG	1 cut(s)	197
MspCI	CTTAAG	1 cut(s)	617
MspI	CCGG	1 cut(s)	863
MspR9I	CCNGG	1 cut(s)	441
MvaI	CCWGG	1 cut(s)	441
MwoI	GCNNNNNNNGC	3 cut(s)	266, 655, 811
NdeII	GATC	3 cut(s)	301, 436, 633
NlaIII	CATG	4 cut(s)	114, 264, 308, 772
NlaIV	GGNNCC	2 cut(s)	242, 555
NmuCI	GTSAC	2 cut(s)	463, 570
NsbI	TGCGCA	1 cut(s)	259
NsiI	ATGCAT	1 cut(s)	116
NspI	RCATGY	1 cut(s)	114
OliI	CACNNNNGTG	1 cut(s)	521
PaeI	GCATGC	1 cut(s)	114
PaqCI	CACCTGC	1 cut(s)	439
PceI	AGGCCT	1 cut(s)	324
PfeI	GAWTC	1 cut(s)	748
PfoI	TCCNGGA	1 cut(s)	439
PkrI	GCNGC	2 cut(s)	97, 268
PleI	GAGTC	1 cut(s)	209
PpsI	GAGTC	1 cut(s)	209
Psp6I	CCWGG	1 cut(s)	439
PspFI	CCCAGC	1 cut(s)	193
PspGI	CCWGG	1 cut(s)	439
PspN4I	GGNNCC	2 cut(s)	242, 555
PspPI	GGNCC	1 cut(s)	554
PstI	CTGCAG	1 cut(s)	644
PvuII	CAGCTG	1 cut(s)	197
RsaI	GTAC	4 cut(s)	35, 276, 595, 623
RsaNI	GTAC	4 cut(s)	34, 275, 594, 622
RseI	CAYNNNNRTG	1 cut(s)	521
SaqAI	TTAA	5 cut(s)	410, 540, 618, 885, 907
SatI	GCNGC	2 cut(s)	96, 267
Sau3AI	GATC	3 cut(s)	301, 436, 633
Sau96I	GGNCC	1 cut(s)	554
ScaI	AGTACT	1 cut(s)	623
SchI	GAGTC	1 cut(s)	210
ScrFI	CCNGG	1 cut(s)	441
SduI	GDGCHC	1 cut(s)	245
SfaNI	GCATC	3 cut(s)	123, 667, 792
SfcI	CTRYAG	1 cut(s)	640
SinI	GGWCC	1 cut(s)	554
SmiMI	CAYNNNNRTG	1 cut(s)	521
SmlI	CTYRAG	1 cut(s)	617
SmoI	CTYRAG	1 cut(s)	617
SphI	GCATGC	1 cut(s)	114
Sse9I	AATT	5 cut(s)	357, 398, 411, 726, 764
SseBI	AGGCCT	1 cut(s)	324
SsiI	CCGC	2 cut(s)	162, 588
StuI	AGGCCT	1 cut(s)	324
StyD4I	CCNGG	1 cut(s)	439
TaiI	ACGT	1 cut(s)	254
TaqI	TCGA	3 cut(s)	106, 636, 695
TasI	AATT	5 cut(s)	357, 398, 411, 726, 764
TatI	WGTACW	1 cut(s)	621
TfiI	GAWTC	1 cut(s)	748
Tru1I	TTAA	5 cut(s)	410, 540, 618, 885, 907
Tru9I	TTAA	5 cut(s)	410, 540, 618, 885, 907
TseFI	GTSAC	2 cut(s)	463, 570
TseI	GCWGC	2 cut(s)	95, 266
Tsp45I	GTSAC	2 cut(s)	463, 570
TspDTI	ATGAA	4 cut(s)	434, 719, 757, 857
TspGWI	ACGGA	1 cut(s)	36
Vha464I	CTTAAG	1 cut(s)	617
VpaK11BI	GGWCC	1 cut(s)	554
XapI	RAATTY	3 cut(s)	398, 726, 764
XceI	RCATGY	1 cut(s)	114
XcmI	CCANNNNNNNNNTGG	1 cut(s)	823
ZrmI	AGTACT	1 cut(s)	623
Zsp2I	ATGCAT	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.