FvH4_4g23610

endoplasmic reticulum protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0010998
Physical Location & Seq
Forward (+)
26049114 .. 26049839
726 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g23610.t1

Sequence Viewer

Length: 207 bp
ATGACGACTTCGAGGCGACTCGCAGATAGGAAGGTGGAGAGGTTCGAGAAGAACATCACCAAGAGAGGGGCGGTGCCGGAGACGACCGCCAAGAAGGGGAAGGATTACCCCGTCGGCCCTATTCTCCTCGGTTTCTTCATCTTTGTTGTTATCGGATCATCTCTGTTTCAGATCATCAGGACAGCTACGACTGGAGGCATGGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RAMP4

Protein Analysis

69

Amino Acids

7.49

Weight (kDa)

10.66

Isoelectric Point (pI)

40.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RAMP4 PF06624 5 - 62 5.1e-27 Ribosome associated membrane protein RAMP4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 73
AciI CCGC 2 cut(s) 71, 87
AclWI GGATC 1 cut(s) 163
AfiI CCNNNNNNNGG 2 cut(s) 66, 96
AluBI AGCT 1 cut(s) 185
AluI AGCT 1 cut(s) 185
Alw26I GTCTC 1 cut(s) 74
AlwI GGATC 1 cut(s) 163
AoxI GGCC 2 cut(s) 115, 201
AspS9I GGNCC 1 cut(s) 116
AsuHPI GGTGA 1 cut(s) 49
BanI GGYRCC 1 cut(s) 73
BcoDI GTCTC 1 cut(s) 74
BmgT120I GGNCC 1 cut(s) 116
BmiI GGNNCC 1 cut(s) 75
BsaJI CCNNGG 1 cut(s) 127
Bsc4I CCNNNNNNNGG 2 cut(s) 66, 96
Bse1I ACTGG 1 cut(s) 196
BseDI CCNNGG 1 cut(s) 127
BseLI CCNNNNNNNGG 2 cut(s) 66, 96
BseNI ACTGG 1 cut(s) 196
BseRI GAGGAG 1 cut(s) 116
Bsh1285I CGRYCG 1 cut(s) 87
BshFI GGCC 2 cut(s) 117, 203
BshNI GGYRCC 1 cut(s) 73
BsiEI CGRYCG 1 cut(s) 87
BsiSI CCGG 1 cut(s) 77
BslI CCNNNNNNNGG 2 cut(s) 66, 96
BsmAI GTCTC 1 cut(s) 74
BsmBI CGTCTC 1 cut(s) 74
BsnI GGCC 2 cut(s) 117, 203
Bsp143I GATC 2 cut(s) 155, 171
BspACI CCGC 2 cut(s) 71, 87
BspANI GGCC 2 cut(s) 117, 203
BspLI GGNNCC 1 cut(s) 75
BspPI GGATC 1 cut(s) 163
BspT107I GGYRCC 1 cut(s) 73
BsrI ACTGG 1 cut(s) 196
BssECI CCNNGG 1 cut(s) 127
BssMI GATC 2 cut(s) 155, 171
BstKTI GATC 2 cut(s) 158, 174
BstMAI GTCTC 1 cut(s) 74
BstMBI GATC 2 cut(s) 155, 171
BstMCI CGRYCG 1 cut(s) 87
BsuRI GGCC 2 cut(s) 117, 203
Cfr13I GGNCC 1 cut(s) 116
CviAII CATG 1 cut(s) 199
CviJI RGCY 3 cut(s) 117, 185, 203
CviKI_1 RGCY 3 cut(s) 117, 185, 203
DpnI GATC 2 cut(s) 157, 173
DpnII GATC 2 cut(s) 155, 171
Esp3I CGTCTC 1 cut(s) 74
FaeI CATG 1 cut(s) 202
FaiI YATR 1 cut(s) 200
FatI CATG 1 cut(s) 198
HaeIII GGCC 2 cut(s) 117, 203
HapII CCGG 1 cut(s) 77
Hin1II CATG 1 cut(s) 202
HinfI GANTC 1 cut(s) 18
HpaII CCGG 1 cut(s) 77
HphI GGTGA 1 cut(s) 49
Hpy188I TCNGA 2 cut(s) 155, 171
Hpy188III TCNNGA 2 cut(s) 46, 178
Hpy99I CGWCG 1 cut(s) 116
HpyAV CCTTC 3 cut(s) 25, 88, 94
Hsp92II CATG 1 cut(s) 202
Kzo9I GATC 2 cut(s) 155, 171
LpnPI CCDG 3 cut(s) 90, 163, 177
MalI GATC 2 cut(s) 157, 173
MboI GATC 2 cut(s) 155, 171
MboII GAAGA 2 cut(s) 61, 127
MlyI GAGTC 1 cut(s) 12
MnlI CCTC 5 cut(s) 6, 33, 59, 137, 188
MspI CCGG 1 cut(s) 77
NdeII GATC 2 cut(s) 155, 171
NlaIII CATG 1 cut(s) 202
NlaIV GGNNCC 1 cut(s) 75
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
PspN4I GGNNCC 1 cut(s) 75
PspPI GGNCC 1 cut(s) 116
Sau3AI GATC 2 cut(s) 155, 171
Sau96I GGNCC 1 cut(s) 116
SchI GAGTC 1 cut(s) 12
SetI ASST 3 cut(s) 36, 44, 187
SgeI CNNG 9 cut(s) 24, 32, 58, 73, 89, 103, 122, 140, 190
SsiI CCGC 2 cut(s) 71, 87
TaqI TCGA 2 cut(s) 11, 45
TspDTI ATGAA 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.