Rh4DG300500

endoplasmic reticulum protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0010998
Physical Location & Seq
Forward (+)
52243560 .. 52244877
1318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG300500.1

Sequence Viewer

Length: 207 bp
ATGACGACTTCGAGGCGACTGGCTGATAGGAAGGTGGAGCGGTTCGAGAAGAACATCACCAAGAGAGGCGCCGTTCCCGAGACGACCGCCAAGAAGGGCAAGGATTATCCCGTCGGCCCTATTCTCCTCGGCTTCTTCATCTTCGTTGTTGTTGGCTCATCTCTGTTTCAGATCATCAGGACAGCTACCACTGGAGGCATGGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RAMP4

Protein Analysis

68

Amino Acids

7.47

Weight (kDa)

10.66

Isoelectric Point (pI)

38.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RAMP4 PF06624 5 - 62 7.2e-27 Ribosome associated membrane protein RAMP4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 68
AccBSI CCGCTC 1 cut(s) 40
AciI CCGC 2 cut(s) 40, 87
AcyI GRCGYC 1 cut(s) 69
AluBI AGCT 1 cut(s) 185
AluI AGCT 1 cut(s) 185
Alw26I GTCTC 1 cut(s) 74
Ama87I CYCGRG 1 cut(s) 77
AoxI GGCC 2 cut(s) 115, 201
AspLEI GCGC 1 cut(s) 71
AspS9I GGNCC 1 cut(s) 116
AsuHPI GGTGA 1 cut(s) 49
AvaI CYCGRG 1 cut(s) 77
BanI GGYRCC 1 cut(s) 68
BceAI ACGGC 1 cut(s) 56
BcoDI GTCTC 1 cut(s) 74
BfoI RGCGCY 1 cut(s) 72
BmeT110I CYCGRG 1 cut(s) 77
BmgT120I GGNCC 1 cut(s) 116
BmiI GGNNCC 1 cut(s) 70
BsaHI GRCGYC 1 cut(s) 69
BsaJI CCNNGG 1 cut(s) 127
Bse1I ACTGG 2 cut(s) 24, 196
BseDI CCNNGG 1 cut(s) 127
BseNI ACTGG 2 cut(s) 24, 196
BseRI GAGGAG 1 cut(s) 116
Bsh1285I CGRYCG 1 cut(s) 87
BshFI GGCC 2 cut(s) 117, 203
BshNI GGYRCC 1 cut(s) 68
BsiEI CGRYCG 1 cut(s) 87
BsiHKCI CYCGRG 1 cut(s) 77
BsmAI GTCTC 1 cut(s) 74
BsmBI CGTCTC 1 cut(s) 74
BsnI GGCC 2 cut(s) 117, 203
BsoBI CYCGRG 1 cut(s) 77
Bsp143I GATC 1 cut(s) 171
BspACI CCGC 2 cut(s) 40, 87
BspANI GGCC 2 cut(s) 117, 203
BspLI GGNNCC 1 cut(s) 70
BspT107I GGYRCC 1 cut(s) 68
BsrBI CCGCTC 1 cut(s) 40
BsrI ACTGG 2 cut(s) 24, 196
BssECI CCNNGG 1 cut(s) 127
BssMI GATC 1 cut(s) 171
BssNI GRCGYC 1 cut(s) 69
BstACI GRCGYC 1 cut(s) 69
BstH2I RGCGCY 1 cut(s) 72
BstHHI GCGC 1 cut(s) 71
BstKTI GATC 1 cut(s) 174
BstMAI GTCTC 1 cut(s) 74
BstMBI GATC 1 cut(s) 171
BstMCI CGRYCG 1 cut(s) 87
BsuRI GGCC 2 cut(s) 117, 203
BtsIMutI CAGTG 1 cut(s) 189
CfoI GCGC 1 cut(s) 71
Cfr13I GGNCC 1 cut(s) 116
CviAII CATG 1 cut(s) 199
CviJI RGCY 6 cut(s) 23, 117, 132, 156, 185, 203
CviKI_1 RGCY 6 cut(s) 23, 117, 132, 156, 185, 203
DinI GGCGCC 1 cut(s) 70
DpnI GATC 1 cut(s) 173
DpnII GATC 1 cut(s) 171
Eco88I CYCGRG 1 cut(s) 77
EgeI GGCGCC 1 cut(s) 70
EheI GGCGCC 1 cut(s) 70
Esp3I CGTCTC 1 cut(s) 74
FaeI CATG 1 cut(s) 202
FaiI YATR 1 cut(s) 200
FatI CATG 1 cut(s) 198
GlaI GCGC 1 cut(s) 70
HaeII RGCGCY 1 cut(s) 72
HaeIII GGCC 2 cut(s) 117, 203
HhaI GCGC 1 cut(s) 71
Hin1I GRCGYC 1 cut(s) 69
Hin1II CATG 1 cut(s) 202
Hin6I GCGC 1 cut(s) 69
HinP1I GCGC 1 cut(s) 69
HphI GGTGA 1 cut(s) 49
Hpy188I TCNGA 1 cut(s) 171
Hpy188III TCNNGA 3 cut(s) 46, 77, 178
Hpy99I CGWCG 1 cut(s) 116
HpyAV CCTTC 2 cut(s) 25, 88
Hsp92I GRCGYC 1 cut(s) 69
Hsp92II CATG 1 cut(s) 202
HspAI GCGC 1 cut(s) 69
KasI GGCGCC 1 cut(s) 68
Kzo9I GATC 1 cut(s) 171
LmnI GCTCC 1 cut(s) 37
LpnPI CCDG 3 cut(s) 5, 163, 177
MalI GATC 1 cut(s) 173
MbiI CCGCTC 1 cut(s) 40
MboI GATC 1 cut(s) 171
MboII GAAGA 3 cut(s) 61, 127, 133
Mly113I GGCGCC 1 cut(s) 69
MnlI CCTC 4 cut(s) 6, 59, 137, 188
NarI GGCGCC 1 cut(s) 69
NdeII GATC 1 cut(s) 171
NlaIII CATG 1 cut(s) 202
NlaIV GGNNCC 1 cut(s) 70
NmeAIII GCCGAG 1 cut(s) 108
PluTI GGCGCC 1 cut(s) 72
PspN4I GGNNCC 1 cut(s) 70
PspPI GGNCC 1 cut(s) 116
Sau3AI GATC 1 cut(s) 171
Sau96I GGNCC 1 cut(s) 116
SetI ASST 2 cut(s) 36, 187
SfoI GGCGCC 1 cut(s) 70
SsiI CCGC 2 cut(s) 40, 87
SspDI GGCGCC 1 cut(s) 68
TaqI TCGA 2 cut(s) 11, 45
TscAI CASTG 1 cut(s) 196
TspDTI ATGAA 1 cut(s) 127
TspRI CASTG 1 cut(s) 196
XcmI CCANNNNNNNNNTGG 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.