Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0010998

Physical Location & Seq

Genomic Coordinates Forward (+)

2587815 .. 2588325

Gene Structure 511 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG040100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGGCCGTTCAAGAAAGGGCTGTGACACAAGCCTGCTTCCTCAGCACCATGACGACATCAAGGAGGCTCACTAGTAGGAAGGTGGAGAGGTTTGACAAGAAGATTACGAAGAGAGGAGCTGTGCCTCAGAAAACAGCCAAAAGGGGGAGGGACTATCCTGTTGGCCCTATTTTGCTCGGCTTCTTTATCTTTGTGGTCATAGGATCATCTCTGTTTCAGATAATCAGGAGTGCTACAAGCGGGGGCATGGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RAMP4

Protein Analysis

84

Amino Acids

9.31

Weight (kDa)

11.51

Isoelectric Point (pI)

49.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RAMP4	PF06624	21 - 77	1.3e-24	Ribosome associated membrane protein RAMP4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0010998)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27330 AT1G27350
fragaria_vesca	FvH4_4g23610
malus_domestica	MD13G1120700.v1.1
prunus_persica	Prupe.1G224500_v2.0.a1 Prupe.1G224500_v2.0.a1
pyrus_communis	pycom16g10310
rosa_chinensis	RchiOBHm_Chr4g0430041 RchiOBHm_Chr5g0004081
rosa_multiflora	Rmu_ssc0000150.1_g000032
rosa_roxburghii	Rroxscaffold_5G00371860
rosa_rugosa	Rorug04G0410200
rosa_samantha	Rh4BG303200 Rh4CG318700 Rh4DG300500 Rh5BG036400 Rh5CG040100 Rh5DG035900
rosa_wichuraiana	Rw4G025730 Rw5G003380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	240
AclWI	GGATC	1 cut(s)	211
AcoI	YGGCCR	1 cut(s)	3
AfiI	CCNNNNNNNGG	1 cut(s)	144
AgsI	TTSAA	1 cut(s)	11
AhlI	ACTAGT	1 cut(s)	71
AluBI	AGCT	1 cut(s)	119
AluI	AGCT	1 cut(s)	119
AlwI	GGATC	1 cut(s)	211
AoxI	GGCC	2 cut(s)	3, 163
AspS9I	GGNCC	1 cut(s)	164
BbvCI	CCTCAGC	1 cut(s)	41
BcuI	ACTAGT	1 cut(s)	71
BfaI	CTAG	1 cut(s)	72
BmgT120I	GGNCC	1 cut(s)	164
Bpu10I	CCTNAGC	1 cut(s)	41
Bsc4I	CCNNNNNNNGG	1 cut(s)	144
BseLI	CCNNNNNNNGG	1 cut(s)	144
BseMII	CTCAG	2 cut(s)	55, 140
BseRI	GAGGAG	1 cut(s)	129
BshFI	GGCC	2 cut(s)	5, 165
BslFI	GGGAC	1 cut(s)	164
BslI	CCNNNNNNNGG	1 cut(s)	144
BsmFI	GGGAC	1 cut(s)	164
BsnI	GGCC	2 cut(s)	5, 165
Bsp143I	GATC	1 cut(s)	203
BspACI	CCGC	1 cut(s)	240
BspANI	GGCC	2 cut(s)	5, 165
BspCNI	CTCAG	2 cut(s)	54, 139
BspPI	GGATC	1 cut(s)	211
BssMI	GATC	1 cut(s)	203
Bst6I	CTCTTC	1 cut(s)	104
BstC8I	GCNNGC	1 cut(s)	34
BstDEI	CTNAG	2 cut(s)	41, 126
BstKTI	GATC	1 cut(s)	206
BstMBI	GATC	1 cut(s)	203
BstMWI	GCNNNNNNNGC	1 cut(s)	42
BsuRI	GGCC	2 cut(s)	5, 165
Cac8I	GCNNGC	1 cut(s)	34
Cfr13I	GGNCC	1 cut(s)	164
CviAII	CATG	2 cut(s)	49, 247
CviJI	RGCY	8 cut(s)	5, 20, 32, 67, 119, 137, 165, 180
CviKI_1	RGCY	8 cut(s)	5, 20, 32, 67, 119, 137, 165, 180
DdeI	CTNAG	2 cut(s)	41, 126
DpnI	GATC	1 cut(s)	205
DpnII	GATC	1 cut(s)	203
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	104
EarI	CTCTTC	1 cut(s)	104
FaeI	CATG	2 cut(s)	52, 250
FaiI	YATR	3 cut(s)	50, 200, 248
FaqI	GGGAC	1 cut(s)	164
FatI	CATG	2 cut(s)	48, 246
FauI	CCCGC	1 cut(s)	233
FspBI	CTAG	1 cut(s)	72
HaeIII	GGCC	2 cut(s)	5, 165
Hin1II	CATG	2 cut(s)	52, 250
Hpy188I	TCNGA	2 cut(s)	129, 219
Hpy188III	TCNNGA	2 cut(s)	11, 226
HpyAV	CCTTC	1 cut(s)	73
HpyF10VI	GCNNNNNNNGC	1 cut(s)	42
HpyF3I	CTNAG	2 cut(s)	41, 126
Hsp92II	CATG	2 cut(s)	52, 250
Kzo9I	GATC	1 cut(s)	203
LmnI	GCTCC	1 cut(s)	116
LpnPI	CCDG	3 cut(s)	46, 171, 211
MaeI	CTAG	1 cut(s)	72
MaeIII	GTNAC	1 cut(s)	22
MalI	GATC	1 cut(s)	205
MboI	GATC	1 cut(s)	203
MboII	GAAGA	2 cut(s)	112, 121
MnlI	CCTC	6 cut(s)	50, 57, 81, 107, 135, 141
MwoI	GCNNNNNNNGC	1 cut(s)	42
NdeII	GATC	1 cut(s)	203
NlaIII	CATG	2 cut(s)	52, 250
NmeAIII	GCCGAG	1 cut(s)	156
NmuCI	GTSAC	1 cut(s)	22
PspPI	GGNCC	1 cut(s)	164
Sau3AI	GATC	1 cut(s)	203
Sau96I	GGNCC	1 cut(s)	164
SetI	ASST	3 cut(s)	84, 92, 121
SpeI	ACTAGT	1 cut(s)	71
SsiI	CCGC	1 cut(s)	240
SspMI	CTAG	1 cut(s)	72
TseFI	GTSAC	1 cut(s)	22
Tsp45I	GTSAC	1 cut(s)	22
XspI	CTAG	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.