Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0010998

Physical Location & Seq

Genomic Coordinates Forward (+)

57295566 .. 57299242

Gene Structure 3677 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0410200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1740 bp

ATGCAACCAGAGATGGTTAGTATGCAGATAATTCTGTTGGCTTCAGCTCTTCTGGTTTTTGGGGTGTTTATGAATTCTTCATGGGCAGAAGAAAAGCTTGTAAATCTGACCAGGTTGCAGATGTTTGTGGATGATCTACCTGACATGCCCAGAATCCAAGGCTTTGAGGTTGTCAATGGCGTTCCAAAACCCAGGTCATTCAAGATTGGCATGTACGAGAAGAAATGGAAATTCCACAGAGACCTACCGGCATCGACGGTGTACGCCTTCGGTACAAGCAAGCGCACAGCAACTGTCCCTGGTCCAACAATCGAGGCCCTCCATGGGATTTCCACCTTCATTAGGTGGCAAAATAATATCCATTCAACCAAACACATCCTCCCTTGGGACCCCACCATTCCGACAGCCGTAGCTTCCACCAAGAAGGGCATTCCTACCGTGGTGCACCTACACGGCGCCATCGGAGAACCCGAGAGTGACGGAAATGCAAACGCATGGTTCACCGAGAAATTCGGAGACCGTGGTCCCACTTGGTCAAAGAAAACATATCGCTACATTAATCAGCAACAGCCCGGAAACCTATGGTATCATGACCATGCCATGGGGTTGACCAGAGTCAACCTCTTGGCCGGTTTGCTGGGGGCCTATATCATCCGGAATCCGGATGTTGAGGGTCCGCTCGGACTTCCTCGTGGTGAATTTGATCGTACGTTGGTGGTTTTCGACCGTGCATTTAGCACCGATGGTTCGATATACATGGATCCCACAGGAAACAATCCCTCCATACACCCACAATGGCAGCCGGAGTACTTTGGCGACGCGATTATTGTAAACGGAAAGGCGTGGCCAAAATTGACGGTACGACGTCGTAAATACAGGTTCCGAATCATCAACGCCAGCAATGCAAGATTCTTTAAATTCTTCTTCACCAACGGGCTGAGATTCATCCACGTGGGAGCTGACTCAGCATACCTTGGAAAACCTGTTGCCAGCAGGGACATTTTAGTGGGGCCATCTGAGATCACTGACGTGGTAGTTGACTTTTCAGAGTCAAAGACTAACAATGCTATCCTAGCCAACGACGCTGCGTATCCTTACCCCTCCGGCGACCCGGTCAACGAAGCCAATAGCAAGGTCATGAAGTTTTGGATTCTCGGCCACTCAGAGGTTGACACGTCGCGTGTTCCGGAGAAGCTTATCCACTACCCTGCTCCTGATTTATCCAGTGCTTCGCAGACTCGCTACATCGCCATGTACGAGTACACTAGCGACATTGATGAGCCGACGCATCTGTATCTGAATGCCAAACCCTACGAGGCTCCGGCGACCGAGACCCCCAAAGCGGGGACGACGGAGATTTGGAACGTGATCAATCTGACGGAGGACAATCACCCGCTGCACATTCACCTTGGGTTGTTTGTTGTACTGGATCAGACTGACTTCGAGAAGGTGGAGGAGTTCAAAGATTGCATGACTAAGCTAAACGACGCTGTCAAGTGCCAGATAAGCAAGTATGCACGTGGCAACAAGACGGAGGTGCCAGCTCACGAGAAGGGGTGGAAGAACGTTTTCAAGATGAGACCTAGTGCTGTGACAAAAATTCTGGTCAGATTTGCTTACATACATTCGAATGCATCCTATGAATTCGACCCGACTGCCGAGCCTGGTTACGTATACCATTGCCATATCTTAGATCATGAAGACAATGCGATGATGAGACCATTGAAAATAATCCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RAMP4

Protein Analysis

579

Amino Acids

65.52

Weight (kDa)

7.36

Isoelectric Point (pI)

36.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu-oxidase_3	PF07732	145 - 221	4.3e-06	Multicopper oxidase
Cu-oxidase	PF00394	272 - 360	5.6e-06	Multicopper oxidase
Cu-oxidase_2	PF07731	421 - 575	1.2e-11	Multicopper oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010998)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27330 AT1G27350
fragaria_vesca	FvH4_4g23610
malus_domestica	MD13G1120700.v1.1
prunus_persica	Prupe.1G224500_v2.0.a1 Prupe.1G224500_v2.0.a1
pyrus_communis	pycom16g10310
rosa_chinensis	RchiOBHm_Chr4g0430041 RchiOBHm_Chr5g0004081
rosa_multiflora	Rmu_ssc0000150.1_g000032
rosa_roxburghii	Rroxscaffold_5G00371860
rosa_rugosa	Rorug04G0410200
rosa_samantha	Rh4BG303200 Rh4CG318700 Rh4DG300500 Rh5BG036400 Rh5CG040100 Rh5DG035900
rosa_wichuraiana	Rw4G025730 Rw5G003380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	868
AccB1I	GGYRCC	2 cut(s)	455, 1537
AccB7I	CCANNNNNTGG	1 cut(s)	601
AccBSI	CCGCTC	1 cut(s)	679
AccI	GTMKAC	1 cut(s)	1674
AccII	CGCG	2 cut(s)	821, 1180
AccIII	TCCGGA	3 cut(s)	654, 661, 1186
AciI	CCGC	3 cut(s)	677, 1343, 1394
AclI	AACGTT	1 cut(s)	1566
AclWI	GGATC	3 cut(s)	755, 768, 1437
AcoI	YGGCCR	3 cut(s)	627, 845, 1156
AcsI	RAATTY	7 cut(s)	73, 230, 509, 698, 917, 1599, 1643
AcuI	CTGAAG	1 cut(s)	27
AcvI	CACGTG	2 cut(s)	952, 1520
AcyI	GRCGYC	2 cut(s)	456, 865
AfaI	GTAC	9 cut(s)	215, 263, 274, 709, 809, 861, 1256, 1262, 1425
AfiI	CCNNNNNNNGG	9 cut(s)	324, 342, 385, 601, 661, 1165, 1342, 1343, 1344
AflIII	ACRYGT	1 cut(s)	1173
AgsI	TTSAA	5 cut(s)	202, 366, 1462, 1573, 1726
AjiI	CACGTC	2 cut(s)	1030, 1176
AjnI	CCWGG	4 cut(s)	110, 191, 298, 1663
AleI	CACNNNNGTG	1 cut(s)	1028
AluBI	AGCT	7 cut(s)	47, 97, 413, 959, 1195, 1480, 1544
AluI	AGCT	7 cut(s)	47, 97, 413, 959, 1195, 1480, 1544
Alw21I	GWGCWC	1 cut(s)	447
Alw26I	GTCTC	5 cut(s)	234, 510, 1325, 1573, 1711
Alw44I	GTGCAC	1 cut(s)	443
AlwI	GGATC	3 cut(s)	755, 768, 1437
AlwNI	CAGNNNCTG	1 cut(s)	293
Ama87I	CYCGRG	1 cut(s)	470
Aor13HI	TCCGGA	3 cut(s)	654, 661, 1186
AoxI	GGCC	6 cut(s)	315, 627, 642, 845, 1010, 1156
ApaLI	GTGCAC	1 cut(s)	443
ApeKI	GCWGC	3 cut(s)	799, 1085, 1396
ApoI	RAATTY	7 cut(s)	73, 230, 509, 698, 917, 1599, 1643
ArsI	GACNNNNNNTTYG	2 cut(s)	179, 211
AseI	ATTAAT	1 cut(s)	558
Asp700I	GAANNNNTTC	1 cut(s)	1568
AspLEI	GCGC	2 cut(s)	285, 458
AspS9I	GGNCC	7 cut(s)	302, 316, 388, 524, 642, 674, 1010
AsuC2I	CCSGG	2 cut(s)	573, 1112
AsuHPI	GGTGA	5 cut(s)	493, 707, 919, 1382, 1397
AsuII	TTCGAA	1 cut(s)	1628
AvaI	CYCGRG	1 cut(s)	470
AvaII	GGWCC	4 cut(s)	302, 388, 524, 674
BaeGI	GKGCMC	1 cut(s)	447
BalI	TGGCCA	1 cut(s)	847
BamHI	GGATCC	1 cut(s)	760
BanI	GGYRCC	2 cut(s)	455, 1537
BauI	CACGAG	2 cut(s)	690, 1547
BbrPI	CACGTG	2 cut(s)	952, 1520
BbsI	GAAGAC	1 cut(s)	1707
Bbv12I	GWGCWC	1 cut(s)	447
BbvI	GCAGC	3 cut(s)	811, 1072, 1383
BccI	CCATC	4 cut(s)	7, 467, 737, 1021
BceAI	ACGGC	2 cut(s)	392, 469
BcgI	CGANNNNNNTGC	2 cut(s)	1637, 1671
BciT130I	CCWGG	4 cut(s)	112, 193, 300, 1665
BciVI	GTATCC	1 cut(s)	1101
BclI	TGATCA	1 cut(s)	1368
BcnI	CCSGG	2 cut(s)	573, 1112
BcoDI	GTCTC	5 cut(s)	234, 510, 1325, 1573, 1711
BfaI	CTAG	3 cut(s)	1073, 1266, 1584
BfoI	RGCGCY	1 cut(s)	459
BfuI	GTATCC	1 cut(s)	1101
BisI	GCNGC	3 cut(s)	800, 1086, 1397
BlsI	GCNGC	3 cut(s)	801, 1087, 1398
BmcAI	AGTACT	1 cut(s)	809
Bme1390I	CCNGG	6 cut(s)	112, 193, 300, 573, 1112, 1665
Bme18I	GGWCC	4 cut(s)	302, 388, 524, 674
BmeT110I	CYCGRG	1 cut(s)	470
BmgBI	CACGTC	2 cut(s)	1030, 1176
BmgT120I	GGNCC	7 cut(s)	302, 316, 388, 524, 642, 674, 1010
BmrFI	CCNGG	6 cut(s)	112, 193, 300, 573, 1112, 1665
BmsI	GCATC	3 cut(s)	260, 1297, 1643
BoxI	GACNNNNGTC	2 cut(s)	522, 614
BpiI	GAAGAC	1 cut(s)	1707
BplI	GAGNNNNNCTC	2 cut(s)	606, 638
Bpu14I	TTCGAA	1 cut(s)	1628
BpuMI	CCSGG	2 cut(s)	573, 1112
BsaAI	YACGTR	3 cut(s)	952, 1520, 1672
BsaHI	GRCGYC	2 cut(s)	456, 865
BsaI	GGTCTC	5 cut(s)	234, 510, 1325, 1573, 1711
BsaWI	WCCGGW	3 cut(s)	654, 661, 1186
BsaXI	ACNNNNNCTCC	4 cut(s)	363, 393, 764, 794
Bsc4I	CCNNNNNNNGG	9 cut(s)	324, 342, 385, 601, 661, 1165, 1342, 1343, 1344
Bse118I	RCCGGY	2 cut(s)	247, 629
Bse1I	ACTGG	2 cut(s)	1224, 1431
Bse3DI	GCAATG	2 cut(s)	907, 1678
BseAI	TCCGGA	3 cut(s)	654, 661, 1186
BseBI	CCWGG	4 cut(s)	112, 193, 300, 1665
BseGI	GGATG	6 cut(s)	136, 375, 651, 670, 945, 1634
BseLI	CCNNNNNNNGG	9 cut(s)	324, 342, 385, 601, 661, 1165, 1342, 1343, 1344
BseMI	GCAATG	2 cut(s)	907, 1678
BseMII	CTCAG	4 cut(s)	929, 978, 1008, 1176
BseNI	ACTGG	2 cut(s)	1224, 1431
BseRI	GAGGAG	1 cut(s)	1469
BseSI	GKGCMC	1 cut(s)	447
BseXI	GCAGC	3 cut(s)	811, 1072, 1383
BseYI	CCCAGC	1 cut(s)	637
BsgI	GTGCAG	1 cut(s)	1382
Bsh1236I	CGCG	2 cut(s)	821, 1180
Bsh1285I	CGRYCG	2 cut(s)	727, 1329
BshFI	GGCC	6 cut(s)	317, 629, 644, 847, 1012, 1158
BshNI	GGYRCC	2 cut(s)	455, 1537
BsiEI	CGRYCG	2 cut(s)	727, 1329
BsiHKAI	GWGCWC	1 cut(s)	447
BsiHKCI	CYCGRG	1 cut(s)	470
BsiWI	CGTACG	1 cut(s)	707
BslFI	GGGAC	5 cut(s)	281, 401, 510, 1010, 1360
BslI	CCNNNNNNNGG	9 cut(s)	324, 342, 385, 601, 661, 1165, 1342, 1343, 1344
BsmAI	GTCTC	5 cut(s)	234, 510, 1325, 1573, 1711
BsmFI	GGGAC	5 cut(s)	281, 401, 510, 1010, 1360
BsmI	GAATGC	3 cut(s)	429, 1306, 1636
BsnI	GGCC	6 cut(s)	317, 629, 644, 847, 1012, 1158
Bso31I	GGTCTC	5 cut(s)	234, 510, 1325, 1573, 1711
BsoBI	CYCGRG	1 cut(s)	470
Bsp119I	TTCGAA	1 cut(s)	1628
Bsp1286I	GDGCHC	1 cut(s)	447
Bsp13I	TCCGGA	3 cut(s)	654, 661, 1186
Bsp143I	GATC	7 cut(s)	133, 703, 760, 1020, 1368, 1429, 1693
Bsp19I	CCATGG	2 cut(s)	322, 600
BspACI	CCGC	3 cut(s)	677, 1343, 1394
BspANI	GGCC	6 cut(s)	317, 629, 644, 847, 1012, 1158
BspCNI	CTCAG	4 cut(s)	930, 977, 1009, 1175
BspEI	TCCGGA	3 cut(s)	654, 661, 1186
BspFNI	CGCG	2 cut(s)	821, 1180
BspHI	TCATGA	3 cut(s)	589, 1137, 1696
BspPI	GGATC	3 cut(s)	755, 768, 1437
BspQI	GCTCTTC	1 cut(s)	54
BspT104I	TTCGAA	1 cut(s)	1628
BspT107I	GGYRCC	2 cut(s)	455, 1537
BspTNI	GGTCTC	5 cut(s)	234, 510, 1325, 1573, 1711
BsrBI	CCGCTC	1 cut(s)	679
BsrDI	GCAATG	2 cut(s)	907, 1678
BsrFI	RCCGGY	2 cut(s)	247, 629
BsrI	ACTGG	2 cut(s)	1224, 1431
BssAI	RCCGGY	2 cut(s)	247, 629
BssMI	GATC	7 cut(s)	133, 703, 760, 1020, 1368, 1429, 1693
BssNAI	GTATAC	1 cut(s)	1675
BssNI	GRCGYC	2 cut(s)	456, 865
BssSI	CACGAG	2 cut(s)	690, 1547
BssT1I	CCWWGG	6 cut(s)	157, 322, 383, 600, 973, 1408
Bst1107I	GTATAC	1 cut(s)	1675
Bst2BI	CACGAG	2 cut(s)	690, 1547
Bst2UI	CCWGG	4 cut(s)	112, 193, 300, 1665
Bst4CI	ACNGT	6 cut(s)	259, 295, 439, 521, 728, 859
Bst6I	CTCTTC	1 cut(s)	54
BstACI	GRCGYC	2 cut(s)	456, 865
BstBAI	YACGTR	3 cut(s)	952, 1520, 1672
BstBI	TTCGAA	1 cut(s)	1628
BstC8I	GCNNGC	4 cut(s)	281, 898, 991, 1542
BstDEI	CTNAG	6 cut(s)	938, 964, 1017, 1162, 1476, 1690
BstDSI	CCRYGG	4 cut(s)	322, 438, 520, 600
BstENI	CCTNNNNNAGG	1 cut(s)	340
BstF5I	GGATG	6 cut(s)	136, 375, 651, 670, 945, 1634
BstFNI	CGCG	2 cut(s)	821, 1180
BstH2I	RGCGCY	1 cut(s)	459
BstHHI	GCGC	2 cut(s)	285, 458
BstKTI	GATC	7 cut(s)	136, 706, 763, 1023, 1371, 1432, 1696
BstMAI	GTCTC	5 cut(s)	234, 510, 1325, 1573, 1711
BstMBI	GATC	7 cut(s)	133, 703, 760, 1020, 1368, 1429, 1693
BstMCI	CGRYCG	2 cut(s)	727, 1329
BstMWI	GCNNNNNNNGC	5 cut(s)	902, 965, 1073, 1082, 1506
BstNI	CCWGG	4 cut(s)	112, 193, 300, 1665
BstNSI	RCATGY	2 cut(s)	148, 214
BstPAI	GACNNNNGTC	2 cut(s)	522, 614
BstSCI	CCNGG	6 cut(s)	110, 191, 298, 571, 1110, 1663
BstSLI	GKGCMC	1 cut(s)	447
BstSNI	TACGTA	1 cut(s)	1672
BstUI	CGCG	2 cut(s)	821, 1180
BstV1I	GCAGC	3 cut(s)	811, 1072, 1383
BstV2I	GAAGAC	1 cut(s)	1707
BstX2I	RGATCY	1 cut(s)	760
BstYI	RGATCY	1 cut(s)	760
BstZ17I	GTATAC	1 cut(s)	1675
BsuI	GTATCC	1 cut(s)	1101
BsuRI	GGCC	6 cut(s)	317, 629, 644, 847, 1012, 1158
BtgI	CCRYGG	4 cut(s)	322, 438, 520, 600
BtgZI	GCGATG	2 cut(s)	1231, 1724
BtrI	CACGTC	2 cut(s)	1030, 1176
BtsCI	GGATG	6 cut(s)	136, 375, 651, 670, 945, 1634
BtsIMutI	CAGTG	2 cut(s)	1023, 1231
Cac8I	GCNNGC	4 cut(s)	281, 898, 991, 1542
CaiI	CAGNNNCTG	1 cut(s)	293
CciI	TCATGA	3 cut(s)	589, 1137, 1696
CfoI	GCGC	2 cut(s)	285, 458
Cfr10I	RCCGGY	2 cut(s)	247, 629
Cfr13I	GGNCC	7 cut(s)	302, 316, 388, 524, 642, 674, 1010
CseI	GACGC	4 cut(s)	827, 1091, 1294, 1496
CsiI	ACCWGGT	1 cut(s)	110
Csp6I	GTAC	9 cut(s)	214, 262, 273, 708, 808, 860, 1255, 1261, 1424
CviQI	GTAC	9 cut(s)	214, 262, 273, 708, 808, 860, 1255, 1261, 1424
DdeI	CTNAG	6 cut(s)	938, 964, 1017, 1162, 1476, 1690
DinI	GGCGCC	1 cut(s)	457
DpnI	GATC	7 cut(s)	135, 705, 762, 1022, 1370, 1431, 1695
DpnII	GATC	7 cut(s)	133, 703, 760, 1020, 1368, 1429, 1693
DraI	TTTAAA	1 cut(s)	916
EaeI	YGGCCR	3 cut(s)	627, 845, 1156
Eam1104I	CTCTTC	1 cut(s)	54
EarI	CTCTTC	1 cut(s)	54
Eco105I	TACGTA	1 cut(s)	1672
Eco130I	CCWWGG	6 cut(s)	157, 322, 383, 600, 973, 1408
Eco31I	GGTCTC	5 cut(s)	234, 510, 1325, 1573, 1711
Eco47I	GGWCC	4 cut(s)	302, 388, 524, 674
Eco57I	CTGAAG	1 cut(s)	27
Eco72I	CACGTG	2 cut(s)	952, 1520
Eco88I	CYCGRG	1 cut(s)	470
EcoNI	CCTNNNNNAGG	1 cut(s)	340
EcoO109I	RGGNCCY	3 cut(s)	316, 388, 642
EcoRI	GAATTC	2 cut(s)	73, 1643
EcoRII	CCWGG	4 cut(s)	110, 191, 298, 1663
EcoT14I	CCWWGG	6 cut(s)	157, 322, 383, 600, 973, 1408
EcoT22I	ATGCAT	1 cut(s)	1636
EgeI	GGCGCC	1 cut(s)	457
EheI	GGCGCC	1 cut(s)	457
ErhI	CCWWGG	6 cut(s)	157, 322, 383, 600, 973, 1408
FalI	AAGNNNNNCTT	2 cut(s)	81, 113
FaqI	GGGAC	5 cut(s)	281, 401, 510, 1010, 1360
FauI	CCCGC	2 cut(s)	1336, 1401
FbaI	TGATCA	1 cut(s)	1368
FblI	GTMKAC	1 cut(s)	1674
Fnu4HI	GCNGC	3 cut(s)	800, 1086, 1397
FokI	GGATG	6 cut(s)	143, 362, 638, 677, 932, 1621
Fsp4HI	GCNGC	3 cut(s)	800, 1086, 1397
FspBI	CTAG	3 cut(s)	1073, 1266, 1584
GlaI	GCGC	2 cut(s)	284, 457
GluI	GCNGC	3 cut(s)	800, 1086, 1397
GsaI	CCCAGC	1 cut(s)	641
HaeII	RGCGCY	1 cut(s)	459
HaeIII	GGCC	6 cut(s)	317, 629, 644, 847, 1012, 1158
HgaI	GACGC	4 cut(s)	827, 1091, 1294, 1496
HhaI	GCGC	2 cut(s)	285, 458
Hin1I	GRCGYC	2 cut(s)	456, 865
Hin6I	GCGC	2 cut(s)	283, 456
HinP1I	GCGC	2 cut(s)	283, 456
HincII	GTYRAC	5 cut(s)	609, 619, 1039, 1117, 1171
HindII	GTYRAC	5 cut(s)	609, 619, 1039, 1117, 1171
HindIII	AAGCTT	2 cut(s)	95, 1193
HphI	GGTGA	5 cut(s)	493, 707, 919, 1382, 1397
Hpy99I	CGWCG	9 cut(s)	259, 821, 867, 870, 1085, 1180, 1288, 1354, 1490
HpyAV	CCTTC	5 cut(s)	277, 346, 418, 1441, 1546
HpyCH4III	ACNGT	6 cut(s)	259, 295, 439, 521, 728, 859
HpyCH4IV	ACGT	9 cut(s)	710, 865, 951, 1029, 1175, 1365, 1519, 1566, 1671
HpyF10VI	GCNNNNNNNGC	5 cut(s)	902, 965, 1073, 1082, 1506
HpyF3I	CTNAG	6 cut(s)	938, 964, 1017, 1162, 1476, 1690
HpySE526I	ACGT	9 cut(s)	710, 865, 951, 1029, 1175, 1365, 1519, 1566, 1671
Hsp92I	GRCGYC	2 cut(s)	456, 865
HspAI	GCGC	2 cut(s)	283, 456
KasI	GGCGCC	1 cut(s)	455
KflI	GGGWCCC	1 cut(s)	388
Kpn2I	TCCGGA	3 cut(s)	654, 661, 1186
Ksp22I	TGATCA	1 cut(s)	1368
Kzo9I	GATC	7 cut(s)	133, 703, 760, 1020, 1368, 1429, 1693
LguI	GCTCTTC	1 cut(s)	54
LmnI	GCTCC	3 cut(s)	956, 1216, 1324
Lsp1109I	GCAGC	3 cut(s)	811, 1072, 1383
LweI	GCATC	3 cut(s)	260, 1297, 1643
MabI	ACCWGGT	1 cut(s)	110
MaeI	CTAG	3 cut(s)	1073, 1266, 1584
MaeII	ACGT	9 cut(s)	710, 865, 951, 1029, 1175, 1365, 1519, 1566, 1671
MaeIII	GTNAC	3 cut(s)	476, 1591, 1667
MalI	GATC	7 cut(s)	135, 705, 762, 1022, 1370, 1431, 1695
MbiI	CCGCTC	1 cut(s)	679
MboI	GATC	7 cut(s)	133, 703, 760, 1020, 1368, 1429, 1693
MboII	GAAGA	8 cut(s)	41, 69, 101, 232, 913, 916, 1573, 1712
MflI	RGATCY	1 cut(s)	760
MhlI	GDGCHC	1 cut(s)	447
MlsI	TGGCCA	1 cut(s)	847
MluCI	AATT	9 cut(s)	30, 73, 230, 509, 698, 851, 917, 1599, 1643
MluNI	TGGCCA	1 cut(s)	847
Mly113I	GGCGCC	1 cut(s)	456
MlyI	GAGTC	4 cut(s)	624, 956, 1058, 1231
MmeI	TCCRAC	2 cut(s)	329, 425
Mox20I	TGGCCA	1 cut(s)	847
Mph1103I	ATGCAT	1 cut(s)	1636
MroI	TCCGGA	3 cut(s)	654, 661, 1186
MroXI	GAANNNNTTC	1 cut(s)	1568
MscI	TGGCCA	1 cut(s)	847
MseI	TTAA	2 cut(s)	558, 915
MslI	CAYNNNNRTG	6 cut(s)	594, 950, 1004, 1028, 1250, 1629
Msp20I	TGGCCA	1 cut(s)	847
MspA1I	CMGCKG	1 cut(s)	1396
MspR9I	CCNGG	6 cut(s)	112, 193, 300, 573, 1112, 1665
Mva1269I	GAATGC	3 cut(s)	429, 1306, 1636
MvaI	CCWGG	4 cut(s)	112, 193, 300, 1665
MvnI	CGCG	2 cut(s)	821, 1180
MwoI	GCNNNNNNNGC	5 cut(s)	902, 965, 1073, 1082, 1506
NarI	GGCGCC	1 cut(s)	456
NciI	CCSGG	2 cut(s)	573, 1112
NcoI	CCATGG	2 cut(s)	322, 600
NdeII	GATC	7 cut(s)	133, 703, 760, 1020, 1368, 1429, 1693
NmeAIII	GCCGAG	2 cut(s)	1134, 1684
NmuCI	GTSAC	2 cut(s)	476, 1591
NsiI	ATGCAT	1 cut(s)	1636
NspI	RCATGY	2 cut(s)	148, 214
NspV	TTCGAA	1 cut(s)	1628
OliI	CACNNNNGTG	1 cut(s)	1028
PagI	TCATGA	3 cut(s)	589, 1137, 1696
PciSI	GCTCTTC	1 cut(s)	54
PcsI	WCGNNNNNNNCGW	2 cut(s)	468, 1254
PctI	GAATGC	3 cut(s)	429, 1306, 1636
PdmI	GAANNNNTTC	1 cut(s)	1568
PfeI	GAWTC	6 cut(s)	153, 658, 885, 909, 942, 1150
Pfl23II	CGTACG	1 cut(s)	707
PflFI	GACNNNGTC	2 cut(s)	1112, 1490
PflMI	CCANNNNNTGG	1 cut(s)	601
PkrI	GCNGC	3 cut(s)	801, 1087, 1398
PleI	GAGTC	4 cut(s)	623, 956, 1057, 1231
PluTI	GGCGCC	1 cut(s)	459
PmaCI	CACGTG	2 cut(s)	952, 1520
PmlI	CACGTG	2 cut(s)	952, 1520
PpsI	GAGTC	4 cut(s)	623, 956, 1057, 1231
Ppu21I	YACGTR	3 cut(s)	952, 1520, 1672
PpuMI	RGGWCCY	1 cut(s)	388
PshAI	GACNNNNGTC	2 cut(s)	522, 614
PshBI	ATTAAT	1 cut(s)	558
Psp1406I	AACGTT	1 cut(s)	1566
Psp5II	RGGWCCY	1 cut(s)	388
Psp6I	CCWGG	4 cut(s)	110, 191, 298, 1663
PspCI	CACGTG	2 cut(s)	952, 1520
PspFI	CCCAGC	1 cut(s)	637
PspGI	CCWGG	4 cut(s)	110, 191, 298, 1663
PspLI	CGTACG	1 cut(s)	707
PspPI	GGNCC	7 cut(s)	302, 316, 388, 524, 642, 674, 1010
PspPPI	RGGWCCY	1 cut(s)	388
PstNI	CAGNNNCTG	1 cut(s)	293
PsuI	RGATCY	1 cut(s)	760
PsyI	GACNNNGTC	2 cut(s)	1112, 1490
RsaI	GTAC	9 cut(s)	215, 263, 274, 709, 809, 861, 1256, 1262, 1425
RsaNI	GTAC	9 cut(s)	214, 262, 273, 708, 808, 860, 1255, 1261, 1424
RseI	CAYNNNNRTG	6 cut(s)	594, 950, 1004, 1028, 1250, 1629
SapI	GCTCTTC	1 cut(s)	54
SaqAI	TTAA	2 cut(s)	558, 915
SatI	GCNGC	3 cut(s)	800, 1086, 1397
Sau3AI	GATC	7 cut(s)	133, 703, 760, 1020, 1368, 1429, 1693
Sau96I	GGNCC	7 cut(s)	302, 316, 388, 524, 642, 674, 1010
ScaI	AGTACT	1 cut(s)	809
SchI	GAGTC	4 cut(s)	624, 956, 1058, 1231
ScrFI	CCNGG	6 cut(s)	112, 193, 300, 573, 1112, 1665
SduI	GDGCHC	1 cut(s)	447
SexAI	ACCWGGT	1 cut(s)	110
SfaNI	GCATC	3 cut(s)	260, 1297, 1643
SfoI	GGCGCC	1 cut(s)	457
SfuI	TTCGAA	1 cut(s)	1628
SinI	GGWCC	4 cut(s)	302, 388, 524, 674
SmiMI	CAYNNNNRTG	6 cut(s)	594, 950, 1004, 1028, 1250, 1629
SnaBI	TACGTA	1 cut(s)	1672
Sse9I	AATT	9 cut(s)	30, 73, 230, 509, 698, 851, 917, 1599, 1643
SsiI	CCGC	3 cut(s)	677, 1343, 1394
SspDI	GGCGCC	1 cut(s)	455
SspMI	CTAG	3 cut(s)	1073, 1266, 1584
StyD4I	CCNGG	6 cut(s)	110, 191, 298, 571, 1110, 1663
StyI	CCWWGG	6 cut(s)	157, 322, 383, 600, 973, 1408
TaaI	ACNGT	6 cut(s)	259, 295, 439, 521, 728, 859
TaiI	ACGT	9 cut(s)	713, 868, 954, 1032, 1178, 1368, 1522, 1569, 1674
TaqI	TCGA	7 cut(s)	254, 312, 723, 749, 1443, 1628, 1647
TaqII	GACCGA	1 cut(s)	1343
TasI	AATT	9 cut(s)	30, 73, 230, 509, 698, 851, 917, 1599, 1643
TatI	WGTACW	3 cut(s)	807, 1260, 1423
TfiI	GAWTC	6 cut(s)	153, 658, 885, 909, 942, 1150
Tru1I	TTAA	2 cut(s)	558, 915
Tru9I	TTAA	2 cut(s)	558, 915
TscAI	CASTG	2 cut(s)	1030, 1231
TseFI	GTSAC	2 cut(s)	476, 1591
TseI	GCWGC	3 cut(s)	799, 1085, 1396
Tsp45I	GTSAC	2 cut(s)	476, 1591
TspDTI	ATGAA	7 cut(s)	69, 86, 328, 934, 1154, 1656, 1713
TspGWI	ACGGA	6 cut(s)	495, 849, 1367, 1394, 1547, 1724
TspRI	CASTG	2 cut(s)	1030, 1231
Tth111I	GACNNNGTC	2 cut(s)	1112, 1490
Van91I	CCANNNNNTGG	1 cut(s)	601
VneI	GTGCAC	1 cut(s)	443
VpaK11BI	GGWCC	4 cut(s)	302, 388, 524, 674
VspI	ATTAAT	1 cut(s)	558
XagI	CCTNNNNNAGG	1 cut(s)	340
XapI	RAATTY	7 cut(s)	73, 230, 509, 698, 917, 1599, 1643
XceI	RCATGY	2 cut(s)	148, 214
XmiI	GTMKAC	1 cut(s)	1674
XmnI	GAANNNNTTC	1 cut(s)	1568
XspI	CTAG	3 cut(s)	1073, 1266, 1584
ZraI	GACGTC	1 cut(s)	866
ZrmI	AGTACT	1 cut(s)	809
Zsp2I	ATGCAT	1 cut(s)	1636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.