FvH4_4g23980

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0016830
Physical Location & Seq
Reverse (-)
26276419 .. 26277546
1128 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g23980.t1

Sequence Viewer

Length: 591 bp
ATGGGAAATTGTGTTCAAGTCCAGAAGTCCAAAGACTCGGCCTCAAAACTCCGATGCTCAAGCTATTCCAGGACAGAATGCATACTGATTCAGAAGCCTATTCGAGAAAGCGCAGACTGTCAACCGAGGCCCCATGTCACCGGTTTTCCTGAACTAAGTGATGAAGAGGATGTAGATTTTTGTCCTGACCCCTGGGTAGAATCTGATGGTGACGATTTCTTCAGTGTTAACAACGATCTTACCCCATCTAGAGGTGATACTCCAATCCACAAAAGCAGTGAAATACAAGTGGAAAGCCCCAACTTGATAAACCACAAAAACAAATCCAAGGTTCAACCGGTTAAGCAGCTGATTGAATTGTTTCATGAAAGCTTCAATGCTGATGAGTCTGGTAGCCATCAAAATATGCATTATGGGTCAGAAGCTGAATCTTCCCTATCTGACCTACCGCGTATTTCAAGGAATGTAAGCCCCTATCGCTCAGTGGTAAATCTAGTGTCGAGCAGGACAAGAAAAGCAACACAGTGTGCACATTGCTTCCTGCCAAAGTTGGTGCAGATCATAAGATTTAGTGAAAGGAAGAGACGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

197

Amino Acids

22.22

Weight (kDa)

6.65

Isoelectric Point (pI)

58.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016830)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g23980
malus_domestica MD16G1117200.v1.1
prunus_persica Prupe.1G229000_v2.0.a1
pyrus_communis pycom16g10040
rosa_chinensis RchiOBHm_Chr4g0430641
rosa_laevigata RLG00000006960
rosa_multiflora Rmu_sc0000131.1_g000014
rosa_roxburghii Rroxscaffold_5G00372390
rosa_rugosa Rorug04G0245000
rosa_samantha Rh4AG301000 Rh4BG308100 Rh4CG325200 Rh4DG305700
rosa_wichuraiana Rw4G026120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 451
AciI CCGC 1 cut(s) 449
AcuI CTGAAG 1 cut(s) 205
AdeI CACNNNGTG 1 cut(s) 527
AfiI CCNNNNNNNGG 1 cut(s) 251
AgeI ACCGGT 2 cut(s) 140, 337
AgsI TTSAA 5 cut(s) 17, 335, 356, 376, 459
AjnI CCWGG 2 cut(s) 68, 191
AloI GAACNNNNNNTCC 1 cut(s) 29
AluBI AGCT 4 cut(s) 63, 349, 372, 425
AluI AGCT 4 cut(s) 63, 349, 372, 425
Alw21I GWGCWC 1 cut(s) 532
Alw26I GTCTC 1 cut(s) 577
Alw44I GTGCAC 1 cut(s) 528
AlwNI CAGNNNCTG 1 cut(s) 425
AoxI GGCC 2 cut(s) 39, 128
ApaLI GTGCAC 1 cut(s) 528
ApeKI GCWGC 1 cut(s) 346
AsiGI ACCGGT 2 cut(s) 140, 337
Asp700I GAANNNNTTC 1 cut(s) 360
AspLEI GCGC 1 cut(s) 113
AspS9I GGNCC 1 cut(s) 129
AsuHPI GGTGA 3 cut(s) 130, 221, 266
BaeGI GKGCMC 1 cut(s) 532
Bbv12I GWGCWC 1 cut(s) 532
BbvI GCAGC 1 cut(s) 358
BccI CCATC 3 cut(s) 200, 253, 405
BciT130I CCWGG 2 cut(s) 70, 193
BcoDI GTCTC 1 cut(s) 577
BfaI CTAG 2 cut(s) 249, 494
BisI GCNGC 1 cut(s) 347
BlsI GCNGC 1 cut(s) 348
Bme1390I CCNGG 2 cut(s) 70, 193
BmgT120I GGNCC 1 cut(s) 129
BmiI GGNNCC 1 cut(s) 131
BmrFI CCNGG 2 cut(s) 70, 193
BmsI GCATC 1 cut(s) 44
BpuEI CTTGAG 1 cut(s) 43
BsaJI CCNNGG 4 cut(s) 125, 191, 192, 327
BsaWI WCCGGW 2 cut(s) 140, 337
Bsc4I CCNNNNNNNGG 1 cut(s) 251
Bse118I RCCGGY 2 cut(s) 140, 337
Bse3DI GCAATG 1 cut(s) 532
BseBI CCWGG 2 cut(s) 70, 193
BseDI CCNNGG 4 cut(s) 125, 191, 192, 327
BseGI GGATG 1 cut(s) 175
BseLI CCNNNNNNNGG 1 cut(s) 251
BseMI GCAATG 1 cut(s) 532
BseMII CTCAG 1 cut(s) 495
BseSI GKGCMC 1 cut(s) 532
BseXI GCAGC 1 cut(s) 358
BsgI GTGCAG 1 cut(s) 575
Bsh1236I CGCG 1 cut(s) 451
BshFI GGCC 2 cut(s) 41, 130
BshTI ACCGGT 2 cut(s) 140, 337
BsiHKAI GWGCWC 1 cut(s) 532
BsiSI CCGG 2 cut(s) 141, 338
BslI CCNNNNNNNGG 1 cut(s) 251
BsmAI GTCTC 1 cut(s) 577
BsmBI CGTCTC 1 cut(s) 577
BsmI GAATGC 1 cut(s) 83
BsnI GGCC 2 cut(s) 41, 130
Bsp1286I GDGCHC 1 cut(s) 532
Bsp143I GATC 2 cut(s) 235, 558
BspACI CCGC 1 cut(s) 449
BspANI GGCC 2 cut(s) 41, 130
BspCNI CTCAG 1 cut(s) 494
BspFNI CGCG 1 cut(s) 451
BspHI TCATGA 1 cut(s) 364
BspLI GGNNCC 1 cut(s) 131
BsrDI GCAATG 1 cut(s) 532
BsrFI RCCGGY 2 cut(s) 140, 337
BssAI RCCGGY 2 cut(s) 140, 337
BssECI CCNNGG 4 cut(s) 125, 191, 192, 327
BssMI GATC 2 cut(s) 235, 558
BssT1I CCWWGG 1 cut(s) 327
Bst2UI CCWGG 2 cut(s) 70, 193
Bst4CI ACNGT 2 cut(s) 119, 525
Bst6I CTCTTC 2 cut(s) 159, 575
BstDEI CTNAG 2 cut(s) 155, 481
BstF5I GGATG 1 cut(s) 175
BstFNI CGCG 1 cut(s) 451
BstHHI GCGC 1 cut(s) 113
BstKTI GATC 2 cut(s) 238, 561
BstMAI GTCTC 1 cut(s) 577
BstMBI GATC 2 cut(s) 235, 558
BstMWI GCNNNNNNNGC 1 cut(s) 477
BstNI CCWGG 2 cut(s) 70, 193
BstSCI CCNGG 2 cut(s) 68, 191
BstSLI GKGCMC 1 cut(s) 532
BstUI CGCG 1 cut(s) 451
BstV1I GCAGC 1 cut(s) 358
BsuRI GGCC 2 cut(s) 41, 130
BtsCI GGATG 1 cut(s) 175
BtsI GCAGTG 1 cut(s) 283
BtsIMutI CAGTG 4 cut(s) 229, 283, 489, 530
CaiI CAGNNNCTG 1 cut(s) 425
CciI TCATGA 1 cut(s) 364
CfoI GCGC 1 cut(s) 113
Cfr10I RCCGGY 2 cut(s) 140, 337
Cfr13I GGNCC 1 cut(s) 129
CspAI ACCGGT 2 cut(s) 140, 337
CviAII CATG 2 cut(s) 134, 365
DdeI CTNAG 2 cut(s) 155, 481
DpnI GATC 2 cut(s) 237, 560
DpnII GATC 2 cut(s) 235, 558
DraIII CACNNNGTG 1 cut(s) 527
Eam1104I CTCTTC 2 cut(s) 159, 575
EarI CTCTTC 2 cut(s) 159, 575
Eco130I CCWWGG 1 cut(s) 327
Eco57I CTGAAG 1 cut(s) 205
EcoO109I RGGNCCY 1 cut(s) 129
EcoRII CCWGG 2 cut(s) 68, 191
EcoT14I CCWWGG 1 cut(s) 327
EcoT22I ATGCAT 2 cut(s) 83, 411
ErhI CCWWGG 1 cut(s) 327
Esp3I CGTCTC 1 cut(s) 577
FaeI CATG 2 cut(s) 137, 368
FaiI YATR 6 cut(s) 83, 135, 366, 407, 414, 563
FatI CATG 2 cut(s) 133, 364
Fnu4HI GCNGC 1 cut(s) 347
FokI GGATG 1 cut(s) 182
Fsp4HI GCNGC 1 cut(s) 347
FspBI CTAG 2 cut(s) 249, 494
GlaI GCGC 1 cut(s) 112
GluI GCNGC 1 cut(s) 347
HaeIII GGCC 2 cut(s) 41, 130
HapII CCGG 2 cut(s) 141, 338
HhaI GCGC 1 cut(s) 113
Hin1II CATG 2 cut(s) 137, 368
Hin6I GCGC 1 cut(s) 111
HinP1I GCGC 1 cut(s) 111
HincII GTYRAC 2 cut(s) 122, 229
HindII GTYRAC 2 cut(s) 122, 229
HindIII AAGCTT 1 cut(s) 370
HinfI GANTC 5 cut(s) 35, 88, 200, 386, 428
HpaI GTTAAC 1 cut(s) 229
HpaII CCGG 2 cut(s) 141, 338
HphI GGTGA 3 cut(s) 130, 221, 266
Hpy166II GTNNAC 3 cut(s) 122, 229, 530
Hpy188I TCNGA 5 cut(s) 53, 93, 205, 421, 442
Hpy188III TCNNGA 6 cut(s) 22, 104, 149, 185, 249, 365
Hpy8I GTNNAC 3 cut(s) 122, 229, 530
HpyCH4III ACNGT 2 cut(s) 119, 525
HpyCH4IV ACGT 1 cut(s) 586
HpyCH4V TGCA 4 cut(s) 81, 409, 530, 556
HpyF10VI GCNNNNNNNGC 1 cut(s) 477
HpyF3I CTNAG 2 cut(s) 155, 481
HpySE526I ACGT 1 cut(s) 586
Hsp92II CATG 2 cut(s) 137, 368
HspAI GCGC 1 cut(s) 111
KspAI GTTAAC 1 cut(s) 229
Kzo9I GATC 2 cut(s) 235, 558
Lsp1109I GCAGC 1 cut(s) 358
LweI GCATC 1 cut(s) 44
MaeI CTAG 2 cut(s) 249, 494
MaeII ACGT 1 cut(s) 586
MaeIII GTNAC 2 cut(s) 136, 209
MalI GATC 2 cut(s) 237, 560
MboI GATC 2 cut(s) 235, 558
MboII GAAGA 3 cut(s) 176, 211, 423
MhlI GDGCHC 1 cut(s) 532
MluCI AATT 2 cut(s) 7, 356
MlyI GAGTC 2 cut(s) 29, 395
MnlI CCTC 4 cut(s) 52, 120, 160, 245
Mph1103I ATGCAT 2 cut(s) 83, 411
MroXI GAANNNNTTC 1 cut(s) 360
MseI TTAA 2 cut(s) 228, 342
MspA1I CMGCKG 1 cut(s) 349
MspI CCGG 2 cut(s) 141, 338
MspR9I CCNGG 2 cut(s) 70, 193
Mva1269I GAATGC 1 cut(s) 83
MvaI CCWGG 2 cut(s) 70, 193
MvnI CGCG 1 cut(s) 451
MwoI GCNNNNNNNGC 1 cut(s) 477
NdeII GATC 2 cut(s) 235, 558
NlaIII CATG 2 cut(s) 137, 368
NlaIV GGNNCC 1 cut(s) 131
NmeAIII GCCGAG 1 cut(s) 17
NmuCI GTSAC 2 cut(s) 136, 209
NsiI ATGCAT 2 cut(s) 83, 411
PagI TCATGA 1 cut(s) 364
PasI CCCWGGG 1 cut(s) 192
PctI GAATGC 1 cut(s) 83
PdmI GAANNNNTTC 1 cut(s) 360
PfeI GAWTC 3 cut(s) 88, 200, 428
PfoI TCCNGGA 1 cut(s) 68
PinAI ACCGGT 2 cut(s) 140, 337
PkrI GCNGC 1 cut(s) 348
PleI GAGTC 2 cut(s) 29, 394
PpsI GAGTC 2 cut(s) 29, 394
Psp6I CCWGG 2 cut(s) 68, 191
PspGI CCWGG 2 cut(s) 68, 191
PspN4I GGNNCC 1 cut(s) 131
PspPI GGNCC 1 cut(s) 129
PstNI CAGNNNCTG 1 cut(s) 425
PvuII CAGCTG 1 cut(s) 349
SaqAI TTAA 2 cut(s) 228, 342
SatI GCNGC 1 cut(s) 347
Sau3AI GATC 2 cut(s) 235, 558
Sau96I GGNCC 1 cut(s) 129
SchI GAGTC 2 cut(s) 29, 395
ScrFI CCNGG 2 cut(s) 70, 193
SduI GDGCHC 1 cut(s) 532
SetI ASST 8 cut(s) 65, 256, 333, 351, 374, 427, 447, 589
SfaNI GCATC 1 cut(s) 44
SmlI CTYRAG 1 cut(s) 58
SmoI CTYRAG 1 cut(s) 58
Sse9I AATT 2 cut(s) 7, 356
SsiI CCGC 1 cut(s) 449
SspMI CTAG 2 cut(s) 249, 494
StyD4I CCNGG 2 cut(s) 68, 191
StyI CCWWGG 1 cut(s) 327
TaaI ACNGT 2 cut(s) 119, 525
TaiI ACGT 1 cut(s) 589
TaqI TCGA 2 cut(s) 103, 500
TasI AATT 2 cut(s) 7, 356
TfiI GAWTC 3 cut(s) 88, 200, 428
Tru1I TTAA 2 cut(s) 228, 342
Tru9I TTAA 2 cut(s) 228, 342
TscAI CASTG 4 cut(s) 229, 283, 489, 530
TseFI GTSAC 2 cut(s) 136, 209
TseI GCWGC 1 cut(s) 346
Tsp45I GTSAC 2 cut(s) 136, 209
TspDTI ATGAA 3 cut(s) 177, 353, 381
TspRI CASTG 4 cut(s) 229, 283, 489, 530
VneI GTGCAC 1 cut(s) 528
XbaI TCTAGA 1 cut(s) 248
XmnI GAANNNNTTC 1 cut(s) 360
XspI CTAG 2 cut(s) 249, 494
Zsp2I ATGCAT 2 cut(s) 83, 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.