Rroxscaffold_5G00372390

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0016830
Physical Location & Seq
Reverse (-)
53829960 .. 53831117
1158 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00372390.1

Sequence Viewer

Length: 600 bp
ATGGGAAATTGTGTACCGGTTCACAAGTCCAAAGACTCGGCCTCAAAACTCCGATGCTCAAGCTATTCGAGGACAGAATGCGTCCTGATTCAAAAGCCTATTCAAGAAAGCGCAGACTGTACACCGAGGCCTCATGTGACTGGTTTTCCAGAACTAAGTGATGAAGAGGACGTACATTTTTGTTCTGACCCCTGGGTAGAATCTGATCTTGAAGATTTCTTCAGTGTTAACAACGATCTTACCCCATCTAGAAGTGATACTCCAATCCACAAAAACAGTGAAATTATAGAAGTGGAAACCCCCAACTTGATAAACCACAAAAACAAATCCAAGGTTCAACCAGTTAAGCAACTGATTGAATTGTTTCATGAAAGCTTTAATGCTGATGGGGCCGGTGGCCATCAACAGATGCATTGTGGATCAGAAGCTGAATCTTCCCTATCTGACCTACCACGAAGTTCAGCGAATGTAAGCCCCTATCATTATTCGGTGGCAAATTTAGCTTCGGGTGCCGGGACAAGAAAAGCTACACAGTTTGCGCAATGCTTCCTGCCAAAGTTGGTGCAGATCATAAGCTTCAGTCAGAGGAAGAGATGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

199

Amino Acids

22.06

Weight (kDa)

5.97

Isoelectric Point (pI)

59.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016830)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g23980
malus_domestica MD16G1117200.v1.1
prunus_persica Prupe.1G229000_v2.0.a1
pyrus_communis pycom16g10040
rosa_chinensis RchiOBHm_Chr4g0430641
rosa_laevigata RLG00000006960
rosa_multiflora Rmu_sc0000131.1_g000014
rosa_roxburghii Rroxscaffold_5G00372390
rosa_rugosa Rorug04G0245000
rosa_samantha Rh4AG301000 Rh4BG308100 Rh4CG325200 Rh4DG305700
rosa_wichuraiana Rw4G026120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 540
AccB1I GGYRCC 1 cut(s) 509
AclWI GGATC 1 cut(s) 427
AcoI YGGCCR 1 cut(s) 397
AcsI RAATTY 1 cut(s) 496
AcuI CTGAAG 2 cut(s) 205, 562
AfaI GTAC 3 cut(s) 15, 121, 174
AgeI ACCGGT 1 cut(s) 16
AgsI TTSAA 5 cut(s) 92, 104, 212, 338, 359
AjnI CCWGG 1 cut(s) 191
AluBI AGCT 6 cut(s) 63, 375, 428, 503, 527, 576
AluI AGCT 6 cut(s) 63, 375, 428, 503, 527, 576
AlwI GGATC 1 cut(s) 427
AlwNI CAGNNNCTG 1 cut(s) 428
AoxI GGCC 4 cut(s) 39, 128, 390, 397
ApoI RAATTY 1 cut(s) 496
AsiGI ACCGGT 1 cut(s) 16
Asp700I GAANNNNTTC 1 cut(s) 363
AspLEI GCGC 2 cut(s) 113, 541
AspS9I GGNCC 1 cut(s) 390
AsuC2I CCSGG 1 cut(s) 514
BalI TGGCCA 1 cut(s) 399
BanI GGYRCC 1 cut(s) 509
BarI GAAGNNNNNNTAC 2 cut(s) 156, 188
BccI CCATC 3 cut(s) 253, 380, 408
BciT130I CCWGG 1 cut(s) 193
BcnI CCSGG 1 cut(s) 514
BfaI CTAG 1 cut(s) 249
Bme1390I CCNGG 2 cut(s) 193, 514
BmgT120I GGNCC 1 cut(s) 390
BmiI GGNNCC 2 cut(s) 391, 511
BmrFI CCNGG 2 cut(s) 193, 514
BmsI GCATC 3 cut(s) 44, 399, 584
BpuEI CTTGAG 1 cut(s) 43
BpuMI CCSGG 1 cut(s) 514
BsaJI CCNNGG 4 cut(s) 125, 191, 192, 330
BsaWI WCCGGW 1 cut(s) 16
Bse118I RCCGGY 2 cut(s) 16, 392
Bse1I ACTGG 2 cut(s) 145, 341
Bse3DI GCAATG 1 cut(s) 548
BseBI CCWGG 1 cut(s) 193
BseDI CCNNGG 4 cut(s) 125, 191, 192, 330
BseMI GCAATG 1 cut(s) 548
BseNI ACTGG 2 cut(s) 145, 341
BsgI GTGCAG 1 cut(s) 584
BshFI GGCC 4 cut(s) 41, 130, 392, 399
BshNI GGYRCC 1 cut(s) 509
BshTI ACCGGT 1 cut(s) 16
BsiSI CCGG 3 cut(s) 17, 393, 513
BslFI GGGAC 1 cut(s) 529
BsmFI GGGAC 1 cut(s) 529
BsmI GAATGC 1 cut(s) 83
BsnI GGCC 4 cut(s) 41, 130, 392, 399
Bsp1407I TGTACA 1 cut(s) 119
Bsp143I GATC 4 cut(s) 205, 235, 419, 567
BspANI GGCC 4 cut(s) 41, 130, 392, 399
BspHI TCATGA 1 cut(s) 367
BspLI GGNNCC 2 cut(s) 391, 511
BspPI GGATC 1 cut(s) 427
BspT107I GGYRCC 1 cut(s) 509
BsrDI GCAATG 1 cut(s) 548
BsrFI RCCGGY 2 cut(s) 16, 392
BsrGI TGTACA 1 cut(s) 119
BsrI ACTGG 2 cut(s) 145, 341
BssAI RCCGGY 2 cut(s) 16, 392
BssECI CCNNGG 4 cut(s) 125, 191, 192, 330
BssMI GATC 4 cut(s) 205, 235, 419, 567
BssT1I CCWWGG 1 cut(s) 330
Bst2UI CCWGG 1 cut(s) 193
Bst4CI ACNGT 3 cut(s) 119, 278, 534
Bst6I CTCTTC 2 cut(s) 159, 584
BstAUI TGTACA 1 cut(s) 119
BstDEI CTNAG 1 cut(s) 155
BstHHI GCGC 2 cut(s) 113, 541
BstKTI GATC 4 cut(s) 208, 238, 422, 570
BstMBI GATC 4 cut(s) 205, 235, 419, 567
BstMWI GCNNNNNNNGC 3 cut(s) 389, 500, 509
BstNI CCWGG 1 cut(s) 193
BstSCI CCNGG 2 cut(s) 191, 512
BsuRI GGCC 4 cut(s) 41, 130, 392, 399
BtsIMutI CAGTG 2 cut(s) 229, 283
CaiI CAGNNNCTG 1 cut(s) 428
CciI TCATGA 1 cut(s) 367
CfoI GCGC 2 cut(s) 113, 541
Cfr10I RCCGGY 2 cut(s) 16, 392
Cfr13I GGNCC 1 cut(s) 390
CseI GACGC 1 cut(s) 70
Csp6I GTAC 3 cut(s) 14, 120, 173
CspAI ACCGGT 1 cut(s) 16
CviAII CATG 2 cut(s) 134, 368
CviQI GTAC 3 cut(s) 14, 120, 173
DdeI CTNAG 1 cut(s) 155
DpnI GATC 4 cut(s) 207, 237, 421, 569
DpnII GATC 4 cut(s) 205, 235, 419, 567
EaeI YGGCCR 1 cut(s) 397
Eam1104I CTCTTC 2 cut(s) 159, 584
EarI CTCTTC 2 cut(s) 159, 584
Eco130I CCWWGG 1 cut(s) 330
Eco147I AGGCCT 1 cut(s) 130
Eco57I CTGAAG 2 cut(s) 205, 562
EcoRII CCWGG 1 cut(s) 191
EcoT14I CCWWGG 1 cut(s) 330
EcoT22I ATGCAT 1 cut(s) 414
ErhI CCWWGG 1 cut(s) 330
FaeI CATG 2 cut(s) 137, 371
FaiI YATR 4 cut(s) 135, 287, 369, 572
FaqI GGGAC 1 cut(s) 529
FatI CATG 2 cut(s) 133, 367
FspBI CTAG 1 cut(s) 249
FspI TGCGCA 1 cut(s) 540
GlaI GCGC 2 cut(s) 112, 540
HaeIII GGCC 4 cut(s) 41, 130, 392, 399
HapII CCGG 3 cut(s) 17, 393, 513
HgaI GACGC 1 cut(s) 70
HhaI GCGC 2 cut(s) 113, 541
Hin1II CATG 2 cut(s) 137, 371
Hin6I GCGC 2 cut(s) 111, 539
HinP1I GCGC 2 cut(s) 111, 539
HincII GTYRAC 1 cut(s) 229
HindII GTYRAC 1 cut(s) 229
HindIII AAGCTT 2 cut(s) 373, 574
HinfI GANTC 4 cut(s) 35, 88, 200, 431
HpaI GTTAAC 1 cut(s) 229
HpaII CCGG 3 cut(s) 17, 393, 513
Hpy166II GTNNAC 4 cut(s) 14, 22, 122, 229
Hpy188I TCNGA 6 cut(s) 53, 187, 205, 424, 445, 585
Hpy188III TCNNGA 6 cut(s) 85, 104, 149, 209, 249, 368
Hpy8I GTNNAC 4 cut(s) 14, 22, 122, 229
HpyCH4III ACNGT 3 cut(s) 119, 278, 534
HpyCH4IV ACGT 1 cut(s) 171
HpyCH4V TGCA 2 cut(s) 412, 565
HpyF10VI GCNNNNNNNGC 3 cut(s) 389, 500, 509
HpyF3I CTNAG 1 cut(s) 155
HpySE526I ACGT 1 cut(s) 171
Hsp92II CATG 2 cut(s) 137, 371
HspAI GCGC 2 cut(s) 111, 539
KspAI GTTAAC 1 cut(s) 229
Kzo9I GATC 4 cut(s) 205, 235, 419, 567
LweI GCATC 3 cut(s) 44, 399, 584
MaeI CTAG 1 cut(s) 249
MaeII ACGT 1 cut(s) 171
MaeIII GTNAC 1 cut(s) 136
MalI GATC 4 cut(s) 207, 237, 421, 569
MboI GATC 4 cut(s) 205, 235, 419, 567
MboII GAAGA 4 cut(s) 176, 211, 224, 426
MlsI TGGCCA 1 cut(s) 399
MluCI AATT 4 cut(s) 7, 282, 359, 496
MluNI TGGCCA 1 cut(s) 399
MlyI GAGTC 1 cut(s) 29
MnlI CCTC 6 cut(s) 52, 63, 120, 141, 160, 579
Mox20I TGGCCA 1 cut(s) 399
Mph1103I ATGCAT 1 cut(s) 414
MroXI GAANNNNTTC 1 cut(s) 363
MscI TGGCCA 1 cut(s) 399
MseI TTAA 3 cut(s) 228, 345, 378
Msp20I TGGCCA 1 cut(s) 399
MspI CCGG 3 cut(s) 17, 393, 513
MspR9I CCNGG 2 cut(s) 193, 514
Mva1269I GAATGC 1 cut(s) 83
MvaI CCWGG 1 cut(s) 193
MwoI GCNNNNNNNGC 3 cut(s) 389, 500, 509
NciI CCSGG 1 cut(s) 514
NdeII GATC 4 cut(s) 205, 235, 419, 567
NlaIII CATG 2 cut(s) 137, 371
NlaIV GGNNCC 2 cut(s) 391, 511
NmeAIII GCCGAG 1 cut(s) 17
NmuCI GTSAC 1 cut(s) 136
NsbI TGCGCA 1 cut(s) 540
NsiI ATGCAT 1 cut(s) 414
PagI TCATGA 1 cut(s) 367
PasI CCCWGGG 1 cut(s) 192
PceI AGGCCT 1 cut(s) 130
PctI GAATGC 1 cut(s) 83
PdmI GAANNNNTTC 1 cut(s) 363
PfeI GAWTC 3 cut(s) 88, 200, 431
PinAI ACCGGT 1 cut(s) 16
PleI GAGTC 1 cut(s) 29
PpsI GAGTC 1 cut(s) 29
Psp6I CCWGG 1 cut(s) 191
PspGI CCWGG 1 cut(s) 191
PspN4I GGNNCC 2 cut(s) 391, 511
PspPI GGNCC 1 cut(s) 390
PstNI CAGNNNCTG 1 cut(s) 428
RsaI GTAC 3 cut(s) 15, 121, 174
RsaNI GTAC 3 cut(s) 14, 120, 173
SaqAI TTAA 3 cut(s) 228, 345, 378
Sau3AI GATC 4 cut(s) 205, 235, 419, 567
Sau96I GGNCC 1 cut(s) 390
SchI GAGTC 1 cut(s) 29
ScrFI CCNGG 2 cut(s) 193, 514
SetI ASST 9 cut(s) 65, 174, 336, 377, 430, 450, 505, 529, 578
SfaNI GCATC 3 cut(s) 44, 399, 584
SmlI CTYRAG 1 cut(s) 58
SmoI CTYRAG 1 cut(s) 58
Sse9I AATT 4 cut(s) 7, 282, 359, 496
SseBI AGGCCT 1 cut(s) 130
SspMI CTAG 1 cut(s) 249
StuI AGGCCT 1 cut(s) 130
StyD4I CCNGG 2 cut(s) 191, 512
StyI CCWWGG 1 cut(s) 330
TaaI ACNGT 3 cut(s) 119, 278, 534
TaiI ACGT 1 cut(s) 174
TaqI TCGA 1 cut(s) 68
TasI AATT 4 cut(s) 7, 282, 359, 496
TatI WGTACW 1 cut(s) 119
TfiI GAWTC 3 cut(s) 88, 200, 431
Tru1I TTAA 3 cut(s) 228, 345, 378
Tru9I TTAA 3 cut(s) 228, 345, 378
TscAI CASTG 2 cut(s) 229, 283
TseFI GTSAC 1 cut(s) 136
Tsp45I GTSAC 1 cut(s) 136
TspDTI ATGAA 3 cut(s) 177, 356, 384
TspRI CASTG 2 cut(s) 229, 283
XapI RAATTY 1 cut(s) 496
XbaI TCTAGA 1 cut(s) 248
XmnI GAANNNNTTC 1 cut(s) 363
XspI CTAG 1 cut(s) 249
Zsp2I ATGCAT 1 cut(s) 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.