pycom16g10040

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0016830
Physical Location & Seq
Forward (+)
6824057 .. 6825102
1046 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g10040.1

Sequence Viewer

Length: 759 bp
ATGAAAGCTCCCTACACAAGGAACTCAAACTTTAGGAAAGCACTACCTAGCACCTCCCACAATCGATTTTACACGGTTGGACCCAACGACTGCATAAGCCAATGCTTAGCTTTCAAGACCAATAAACTTGTTCACCAGATTCTAGTTGAGCCAAACAAACCTTGTATCACTTCCTTAATGTACAAAACCAACCATGTAACAAACCCTCCACATCTTCTTGAAGAGATGGGAAATTGTGTTCCAGTTCATAAGACCCAAGACTCTGCTTCAGATCTCAAATGTTCAAGCGATTCCCGGACAGAATGCATCCTGATTGAACGCCCTGTTCGAGAAAACTCCATTGGTACCGCGATCCCCCGCGTGAGCAGTTTTCAAGAACCAAGTGGGAAAGAGTTAGAATCTGATCGTGAAGATTTCTTCAGTGTCAATGGTGATCTTACCCCATCTGCAAGCAACACTCCGATCCATGAAATAAAAACTGATTCGAAAAAGCAGCTGATTGAATTGTTCCATGAGAGCGACAGTGATGGATCAGAAGACGAACCTTCCATTTTCGACCTGCCACAAAATTCAGCAAATAAAAGTTTATCGTATGAGTCTGTAGCGGACATAGTTTTCAGAAGTGTGACAATTCCGAAAACGAATTCGAATCCCAGCAGGACAAGAAAAGTTACACAGTTTGCACAATATTGCTGTCTGCCTAAACTGGTGCGGAGCCTAAGCTGTTGTAAGAGGAAGAGACGCTACCGATGCCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

253

Amino Acids

28.43

Weight (kDa)

8.6

Isoelectric Point (pI)

51.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016830)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g23980
malus_domestica MD16G1117200.v1.1
prunus_persica Prupe.1G229000_v2.0.a1
pyrus_communis pycom16g10040
rosa_chinensis RchiOBHm_Chr4g0430641
rosa_laevigata RLG00000006960
rosa_multiflora Rmu_sc0000131.1_g000014
rosa_roxburghii Rroxscaffold_5G00372390
rosa_rugosa Rorug04G0245000
rosa_samantha Rh4AG301000 Rh4BG308100 Rh4CG325200 Rh4DG305700
rosa_wichuraiana Rw4G026120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 567
Acc65I GGTACC 1 cut(s) 344
AccB1I GGYRCC 1 cut(s) 344
AccII CGCG 2 cut(s) 350, 360
AciI CCGC 4 cut(s) 348, 358, 605, 712
AclWI GGATC 3 cut(s) 346, 457, 538
AcsI RAATTY 2 cut(s) 568, 643
AcuI CTGAAG 2 cut(s) 252, 403
AfaI GTAC 2 cut(s) 182, 346
AfiI CCNNNNNNNGG 1 cut(s) 18
AgsI TTSAA 6 cut(s) 115, 221, 285, 317, 374, 503
AjuI GAANNNNNNNTTGG 2 cut(s) 324, 356
AloI GAACNNNNNNTCC 2 cut(s) 222, 254
AluBI AGCT 4 cut(s) 8, 110, 496, 723
AluI AGCT 4 cut(s) 8, 110, 496, 723
Alw26I GTCTC 1 cut(s) 733
AlwI GGATC 3 cut(s) 346, 457, 538
ApeKI GCWGC 1 cut(s) 493
ApoI RAATTY 2 cut(s) 568, 643
Asp718I GGTACC 1 cut(s) 344
AspS9I GGNCC 1 cut(s) 80
AsuC2I CCSGG 1 cut(s) 295
AsuHPI GGTGA 2 cut(s) 125, 443
AsuII TTCGAA 2 cut(s) 485, 647
AvaII GGWCC 1 cut(s) 80
BanI GGYRCC 1 cut(s) 344
BarI GAAGNNNNNNTAC 1 cut(s) 728
BbsI GAAGAC 1 cut(s) 543
BbvI GCAGC 1 cut(s) 505
BccI CCATC 3 cut(s) 220, 451, 521
BcnI CCSGG 1 cut(s) 295
BcoDI GTCTC 1 cut(s) 733
BfaI CTAG 2 cut(s) 48, 143
BfmI CTRYAG 1 cut(s) 600
BfuAI ACCTGC 1 cut(s) 567
BglII AGATCT 1 cut(s) 271
BisI GCNGC 1 cut(s) 494
BlpI GCTNAGC 1 cut(s) 106
BlsI GCNGC 1 cut(s) 495
Bme1390I CCNGG 1 cut(s) 295
Bme18I GGWCC 1 cut(s) 80
BmgT120I GGNCC 1 cut(s) 80
BmiI GGNNCC 3 cut(s) 82, 346, 716
BmrFI CCNGG 1 cut(s) 295
BmsI GCATC 2 cut(s) 315, 740
BpiI GAAGAC 1 cut(s) 543
Bpu10I CCTNAGC 1 cut(s) 719
Bpu1102I GCTNAGC 1 cut(s) 106
Bpu14I TTCGAA 2 cut(s) 485, 647
BpuMI CCSGG 1 cut(s) 295
Bsa29I ATCGAT 1 cut(s) 64
BsaXI ACNNNNNCTCC 2 cut(s) 190, 220
Bsc4I CCNNNNNNNGG 1 cut(s) 18
Bse1I ACTGG 2 cut(s) 242, 711
BseCI ATCGAT 1 cut(s) 64
BseGI GGATG 1 cut(s) 306
BseLI CCNNNNNNNGG 1 cut(s) 18
BseNI ACTGG 2 cut(s) 242, 711
BseXI GCAGC 1 cut(s) 505
BseYI CCCAGC 1 cut(s) 653
Bsh1236I CGCG 2 cut(s) 350, 360
BshNI GGYRCC 1 cut(s) 344
BshVI ATCGAT 1 cut(s) 64
BsiSI CCGG 1 cut(s) 295
BslI CCNNNNNNNGG 1 cut(s) 18
BsmAI GTCTC 1 cut(s) 733
BsmBI CGTCTC 1 cut(s) 733
BsmI GAATGC 1 cut(s) 308
Bsp119I TTCGAA 2 cut(s) 485, 647
Bsp1407I TGTACA 1 cut(s) 180
Bsp143I GATC 6 cut(s) 271, 351, 403, 433, 462, 530
Bsp1720I GCTNAGC 1 cut(s) 106
BspACI CCGC 4 cut(s) 348, 358, 605, 712
BspDI ATCGAT 1 cut(s) 64
BspFNI CGCG 2 cut(s) 350, 360
BspLI GGNNCC 3 cut(s) 82, 346, 716
BspMI ACCTGC 1 cut(s) 567
BspPI GGATC 3 cut(s) 346, 457, 538
BspT104I TTCGAA 2 cut(s) 485, 647
BspT107I GGYRCC 1 cut(s) 344
BsrGI TGTACA 1 cut(s) 180
BsrI ACTGG 2 cut(s) 242, 711
BssMI GATC 6 cut(s) 271, 351, 403, 433, 462, 530
Bst4CI ACNGT 3 cut(s) 76, 524, 678
Bst6I CTCTTC 2 cut(s) 216, 731
BstAUI TGTACA 1 cut(s) 180
BstBI TTCGAA 2 cut(s) 485, 647
BstC8I GCNNGC 1 cut(s) 451
BstDEI CTNAG 2 cut(s) 106, 719
BstENI CCTNNNNNAGG 1 cut(s) 16
BstF5I GGATG 1 cut(s) 306
BstFNI CGCG 2 cut(s) 350, 360
BstKTI GATC 6 cut(s) 274, 354, 406, 436, 465, 533
BstMAI GTCTC 1 cut(s) 733
BstMBI GATC 6 cut(s) 271, 351, 403, 433, 462, 530
BstMWI GCNNNNNNNGC 1 cut(s) 750
BstSCI CCNGG 1 cut(s) 293
BstSFI CTRYAG 1 cut(s) 600
BstUI CGCG 2 cut(s) 350, 360
BstV1I GCAGC 1 cut(s) 505
BstV2I GAAGAC 1 cut(s) 543
BstX2I RGATCY 1 cut(s) 271
BstYI RGATCY 1 cut(s) 271
Bsu15I ATCGAT 1 cut(s) 64
BsuTUI ATCGAT 1 cut(s) 64
BtsCI GGATG 1 cut(s) 306
BtsIMutI CAGTG 2 cut(s) 427, 529
BveI ACCTGC 1 cut(s) 567
Cac8I GCNNGC 1 cut(s) 451
Cfr13I GGNCC 1 cut(s) 80
ClaI ATCGAT 1 cut(s) 64
CseI GACGC 1 cut(s) 750
Csp6I GTAC 2 cut(s) 181, 345
CviAII CATG 3 cut(s) 194, 467, 512
CviJI RGCY 7 cut(s) 8, 99, 110, 151, 496, 717, 723
CviKI_1 RGCY 7 cut(s) 8, 99, 110, 151, 496, 717, 723
CviQI GTAC 2 cut(s) 181, 345
DdeI CTNAG 2 cut(s) 106, 719
DpnI GATC 6 cut(s) 273, 353, 405, 435, 464, 532
DpnII GATC 6 cut(s) 271, 351, 403, 433, 462, 530
Eam1104I CTCTTC 2 cut(s) 216, 731
EarI CTCTTC 2 cut(s) 216, 731
Eco47I GGWCC 1 cut(s) 80
Eco57I CTGAAG 2 cut(s) 252, 403
EcoNI CCTNNNNNAGG 1 cut(s) 16
EcoRI GAATTC 1 cut(s) 643
EcoT22I ATGCAT 1 cut(s) 308
Esp3I CGTCTC 1 cut(s) 733
FaeI CATG 3 cut(s) 197, 470, 515
FaiI YATR 7 cut(s) 95, 195, 249, 468, 513, 594, 611
FatI CATG 3 cut(s) 193, 466, 511
FauI CCCGC 1 cut(s) 365
Fnu4HI GCNGC 1 cut(s) 494
FokI GGATG 1 cut(s) 293
Fsp4HI GCNGC 1 cut(s) 494
FspBI CTAG 2 cut(s) 48, 143
GluI GCNGC 1 cut(s) 494
GsaI CCCAGC 1 cut(s) 657
HapII CCGG 1 cut(s) 295
HgaI GACGC 1 cut(s) 750
Hin1II CATG 3 cut(s) 197, 470, 515
HinfI GANTC 7 cut(s) 139, 260, 290, 398, 482, 596, 649
HpaII CCGG 1 cut(s) 295
HphI GGTGA 2 cut(s) 125, 443
Hpy166II GTNNAC 1 cut(s) 133
Hpy188I TCNGA 6 cut(s) 271, 403, 462, 535, 620, 636
Hpy188III TCNNGA 6 cut(s) 115, 218, 310, 329, 374, 407
Hpy8I GTNNAC 1 cut(s) 133
HpyAV CCTTC 1 cut(s) 555
HpyCH4III ACNGT 3 cut(s) 76, 524, 678
HpyCH4V TGCA 4 cut(s) 93, 306, 449, 683
HpyF10VI GCNNNNNNNGC 1 cut(s) 750
HpyF3I CTNAG 2 cut(s) 106, 719
Hsp92II CATG 3 cut(s) 197, 470, 515
KpnI GGTACC 1 cut(s) 348
Kzo9I GATC 6 cut(s) 271, 351, 403, 433, 462, 530
LmnI GCTCC 2 cut(s) 13, 714
LpnPI CCDG 9 cut(s) 149, 255, 308, 323, 336, 572, 643, 667, 692
Lsp1109I GCAGC 1 cut(s) 505
LweI GCATC 2 cut(s) 315, 740
MaeI CTAG 2 cut(s) 48, 143
MaeIII GTNAC 3 cut(s) 196, 625, 670
MalI GATC 6 cut(s) 273, 353, 405, 435, 464, 532
MboI GATC 6 cut(s) 271, 351, 403, 433, 462, 530
MboII GAAGA 6 cut(s) 206, 233, 409, 422, 548, 748
MflI RGATCY 1 cut(s) 271
MluCI AATT 5 cut(s) 232, 503, 568, 630, 643
MlyI GAGTC 2 cut(s) 254, 605
MmeI TCCRAC 1 cut(s) 58
MnlI CCTC 3 cut(s) 64, 216, 726
Mph1103I ATGCAT 1 cut(s) 308
MseI TTAA 1 cut(s) 176
MspA1I CMGCKG 1 cut(s) 496
MspI CCGG 1 cut(s) 295
MspR9I CCNGG 1 cut(s) 295
Mva1269I GAATGC 1 cut(s) 308
MvnI CGCG 2 cut(s) 350, 360
MwoI GCNNNNNNNGC 1 cut(s) 750
NciI CCSGG 1 cut(s) 295
NdeII GATC 6 cut(s) 271, 351, 403, 433, 462, 530
NlaIII CATG 3 cut(s) 197, 470, 515
NlaIV GGNNCC 3 cut(s) 82, 346, 716
NmuCI GTSAC 1 cut(s) 625
NsiI ATGCAT 1 cut(s) 308
NspV TTCGAA 2 cut(s) 485, 647
PcsI WCGNNNNNNNCGW 1 cut(s) 325
PctI GAATGC 1 cut(s) 308
PfeI GAWTC 5 cut(s) 139, 290, 398, 482, 649
PfoI TCCNGGA 1 cut(s) 293
PkrI GCNGC 1 cut(s) 495
PleI GAGTC 2 cut(s) 254, 604
PpsI GAGTC 2 cut(s) 254, 604
PspFI CCCAGC 1 cut(s) 653
PspN4I GGNNCC 3 cut(s) 82, 346, 716
PspPI GGNCC 1 cut(s) 80
PsuI RGATCY 1 cut(s) 271
PvuII CAGCTG 1 cut(s) 496
RsaI GTAC 2 cut(s) 182, 346
RsaNI GTAC 2 cut(s) 181, 345
SaqAI TTAA 1 cut(s) 176
SatI GCNGC 1 cut(s) 494
Sau3AI GATC 6 cut(s) 271, 351, 403, 433, 462, 530
Sau96I GGNCC 1 cut(s) 80
SchI GAGTC 2 cut(s) 254, 605
ScrFI CCNGG 1 cut(s) 295
SetI ASST 9 cut(s) 10, 49, 56, 112, 163, 498, 547, 561, 725
SfaNI GCATC 2 cut(s) 315, 740
SfcI CTRYAG 1 cut(s) 600
SfuI TTCGAA 2 cut(s) 485, 647
SinI GGWCC 1 cut(s) 80
Sse9I AATT 5 cut(s) 232, 503, 568, 630, 643
SsiI CCGC 4 cut(s) 348, 358, 605, 712
SspI AATATT 1 cut(s) 689
SspMI CTAG 2 cut(s) 48, 143
StyD4I CCNGG 1 cut(s) 293
TaaI ACNGT 3 cut(s) 76, 524, 678
TaqI TCGA 5 cut(s) 64, 328, 485, 555, 647
TasI AATT 5 cut(s) 232, 503, 568, 630, 643
TatI WGTACW 1 cut(s) 180
TfiI GAWTC 5 cut(s) 139, 290, 398, 482, 649
Tru1I TTAA 1 cut(s) 176
Tru9I TTAA 1 cut(s) 176
TscAI CASTG 2 cut(s) 427, 529
TseFI GTSAC 1 cut(s) 625
TseI GCWGC 1 cut(s) 493
Tsp45I GTSAC 1 cut(s) 625
TspDTI ATGAA 3 cut(s) 17, 236, 483
TspRI CASTG 2 cut(s) 427, 529
VpaK11BI GGWCC 1 cut(s) 80
XagI CCTNNNNNAGG 1 cut(s) 16
XapI RAATTY 2 cut(s) 568, 643
XspI CTAG 2 cut(s) 48, 143
Zsp2I ATGCAT 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.