RchiOBHm_Chr4g0430641

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0016830
Physical Location & Seq
Reverse (-)
55121931 .. 55123050
1120 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39936

Sequence Viewer

Length: 606 bp
ATGGGAAATTGTGTTCCGGTTCACAAGTCCAAAGACTCGGCCTCAAAACTCCGATGCTCAAGCTATTCGAGGACAGAATGCGTCCTGATTCAAAAGCCTATTCAAGAAAGCGCAGACTGTACACCGAGGCCTCGTGTGACTGGTTTTCCAGAACTAAGTGATGAAGAGGATGTACATTTTTGTTCTGACCCCTGGGTAGAATCTGATGTTGAAGATTTCTTCAGTGTTAACAACGATCTTACCCCATCTAGAAATGATAGTACTCCAATCCACAAAAACAGTGAAATTATAGAAGTGGAAACCCCCAACTTGATAAATAACCACAAAAACAAATCCAAGGTTCAACCGGTTAAGCAACTGATTGAATTGTTTCATGAAAGCTTTACCGCTGATGAGGCCGGTGGCCATCAACAGATGCATTATGGGTCAGAAGCTGAATCTTCCCTATCTGACCTACCACGACGTTCAGCGAATGTAAGCCCCTATCATTATTCGGTGGCAAATTTGGTTTCGGGTGCCAGGACAAGAAAAGCTACACAGTTTGCGCAATGCTTCCTGCCAAAGTTGGTGCAGATCATAAGCTTCAGTCAGAGGAAGAGATGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

201

Amino Acids

22.61

Weight (kDa)

6.24

Isoelectric Point (pI)

63.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016830)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g23980
malus_domestica MD16G1117200.v1.1
prunus_persica Prupe.1G229000_v2.0.a1
pyrus_communis pycom16g10040
rosa_chinensis RchiOBHm_Chr4g0430641
rosa_laevigata RLG00000006960
rosa_multiflora Rmu_sc0000131.1_g000014
rosa_roxburghii Rroxscaffold_5G00372390
rosa_rugosa Rorug04G0245000
rosa_samantha Rh4AG301000 Rh4BG308100 Rh4CG325200 Rh4DG305700
rosa_wichuraiana Rw4G026120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 546
AccB1I GGYRCC 1 cut(s) 515
AciI CCGC 1 cut(s) 387
AcoI YGGCCR 1 cut(s) 403
AcsI RAATTY 1 cut(s) 502
AcuI CTGAAG 2 cut(s) 205, 568
AfaI GTAC 3 cut(s) 121, 174, 262
AgeI ACCGGT 1 cut(s) 346
AgsI TTSAA 5 cut(s) 92, 104, 212, 344, 365
AjnI CCWGG 2 cut(s) 191, 518
AloI GAACNNNNNNTCC 1 cut(s) 29
AluBI AGCT 5 cut(s) 63, 381, 434, 533, 582
AluI AGCT 5 cut(s) 63, 381, 434, 533, 582
AlwNI CAGNNNCTG 1 cut(s) 434
AoxI GGCC 4 cut(s) 39, 128, 396, 403
ApoI RAATTY 1 cut(s) 502
AsiGI ACCGGT 1 cut(s) 346
Asp700I GAANNNNTTC 1 cut(s) 369
AspLEI GCGC 2 cut(s) 113, 547
BalI TGGCCA 1 cut(s) 405
BanI GGYRCC 1 cut(s) 515
BarI GAAGNNNNNNTAC 2 cut(s) 156, 188
BauI CACGAG 1 cut(s) 132
BccI CCATC 2 cut(s) 253, 414
BciT130I CCWGG 2 cut(s) 193, 520
BfaI CTAG 1 cut(s) 249
BmcAI AGTACT 1 cut(s) 262
Bme1390I CCNGG 2 cut(s) 193, 520
BmiI GGNNCC 1 cut(s) 517
BmrFI CCNGG 2 cut(s) 193, 520
BmsI GCATC 3 cut(s) 44, 405, 590
BpuEI CTTGAG 1 cut(s) 43
BsaJI CCNNGG 4 cut(s) 125, 191, 192, 336
BsaWI WCCGGW 2 cut(s) 16, 346
Bse118I RCCGGY 2 cut(s) 346, 398
Bse1I ACTGG 1 cut(s) 145
Bse3DI GCAATG 1 cut(s) 554
BseBI CCWGG 2 cut(s) 193, 520
BseDI CCNNGG 4 cut(s) 125, 191, 192, 336
BseGI GGATG 1 cut(s) 175
BseMI GCAATG 1 cut(s) 554
BseNI ACTGG 1 cut(s) 145
BsgI GTGCAG 1 cut(s) 590
BshFI GGCC 4 cut(s) 41, 130, 398, 405
BshNI GGYRCC 1 cut(s) 515
BshTI ACCGGT 1 cut(s) 346
BsiSI CCGG 3 cut(s) 17, 347, 399
BsmI GAATGC 1 cut(s) 83
BsnI GGCC 4 cut(s) 41, 130, 398, 405
Bsp1407I TGTACA 2 cut(s) 119, 172
Bsp143I GATC 2 cut(s) 235, 573
BspACI CCGC 1 cut(s) 387
BspANI GGCC 4 cut(s) 41, 130, 398, 405
BspHI TCATGA 1 cut(s) 373
BspLI GGNNCC 1 cut(s) 517
BspT107I GGYRCC 1 cut(s) 515
BsrDI GCAATG 1 cut(s) 554
BsrFI RCCGGY 2 cut(s) 346, 398
BsrGI TGTACA 2 cut(s) 119, 172
BsrI ACTGG 1 cut(s) 145
BssAI RCCGGY 2 cut(s) 346, 398
BssECI CCNNGG 4 cut(s) 125, 191, 192, 336
BssMI GATC 2 cut(s) 235, 573
BssSI CACGAG 1 cut(s) 132
BssT1I CCWWGG 1 cut(s) 336
Bst2BI CACGAG 1 cut(s) 132
Bst2UI CCWGG 2 cut(s) 193, 520
Bst4CI ACNGT 3 cut(s) 119, 281, 540
Bst6I CTCTTC 2 cut(s) 159, 590
BstAUI TGTACA 2 cut(s) 119, 172
BstDEI CTNAG 1 cut(s) 155
BstF5I GGATG 1 cut(s) 175
BstHHI GCGC 2 cut(s) 113, 547
BstKTI GATC 2 cut(s) 238, 576
BstMBI GATC 2 cut(s) 235, 573
BstMWI GCNNNNNNNGC 1 cut(s) 395
BstNI CCWGG 2 cut(s) 193, 520
BstSCI CCNGG 2 cut(s) 191, 518
BsuRI GGCC 4 cut(s) 41, 130, 398, 405
BtsCI GGATG 1 cut(s) 175
BtsIMutI CAGTG 2 cut(s) 229, 286
CaiI CAGNNNCTG 1 cut(s) 434
CciI TCATGA 1 cut(s) 373
CfoI GCGC 2 cut(s) 113, 547
Cfr10I RCCGGY 2 cut(s) 346, 398
CseI GACGC 1 cut(s) 70
Csp6I GTAC 3 cut(s) 120, 173, 261
CspAI ACCGGT 1 cut(s) 346
CviAII CATG 1 cut(s) 374
CviQI GTAC 3 cut(s) 120, 173, 261
DdeI CTNAG 1 cut(s) 155
DpnI GATC 2 cut(s) 237, 575
DpnII GATC 2 cut(s) 235, 573
EaeI YGGCCR 1 cut(s) 403
Eam1104I CTCTTC 2 cut(s) 159, 590
EarI CTCTTC 2 cut(s) 159, 590
Eco130I CCWWGG 1 cut(s) 336
Eco147I AGGCCT 1 cut(s) 130
Eco57I CTGAAG 2 cut(s) 205, 568
EcoRII CCWGG 2 cut(s) 191, 518
EcoT14I CCWWGG 1 cut(s) 336
EcoT22I ATGCAT 1 cut(s) 420
ErhI CCWWGG 1 cut(s) 336
FaeI CATG 1 cut(s) 377
FaiI YATR 4 cut(s) 290, 375, 423, 578
FatI CATG 1 cut(s) 373
FokI GGATG 1 cut(s) 182
FspBI CTAG 1 cut(s) 249
FspI TGCGCA 1 cut(s) 546
GlaI GCGC 2 cut(s) 112, 546
HaeIII GGCC 4 cut(s) 41, 130, 398, 405
HapII CCGG 3 cut(s) 17, 347, 399
HgaI GACGC 1 cut(s) 70
HhaI GCGC 2 cut(s) 113, 547
Hin1II CATG 1 cut(s) 377
Hin6I GCGC 2 cut(s) 111, 545
HinP1I GCGC 2 cut(s) 111, 545
HincII GTYRAC 1 cut(s) 229
HindII GTYRAC 1 cut(s) 229
HindIII AAGCTT 2 cut(s) 379, 580
HinfI GANTC 4 cut(s) 35, 88, 200, 437
HpaI GTTAAC 1 cut(s) 229
HpaII CCGG 3 cut(s) 17, 347, 399
Hpy166II GTNNAC 3 cut(s) 22, 122, 229
Hpy188I TCNGA 6 cut(s) 53, 187, 205, 430, 451, 591
Hpy188III TCNNGA 5 cut(s) 85, 104, 149, 249, 374
Hpy8I GTNNAC 3 cut(s) 22, 122, 229
Hpy99I CGWCG 1 cut(s) 465
HpyCH4III ACNGT 3 cut(s) 119, 281, 540
HpyCH4IV ACGT 1 cut(s) 463
HpyCH4V TGCA 2 cut(s) 418, 571
HpyF10VI GCNNNNNNNGC 1 cut(s) 395
HpyF3I CTNAG 1 cut(s) 155
HpySE526I ACGT 1 cut(s) 463
Hsp92II CATG 1 cut(s) 377
HspAI GCGC 2 cut(s) 111, 545
KspAI GTTAAC 1 cut(s) 229
Kzo9I GATC 2 cut(s) 235, 573
LweI GCATC 3 cut(s) 44, 405, 590
MaeI CTAG 1 cut(s) 249
MaeII ACGT 1 cut(s) 463
MaeIII GTNAC 1 cut(s) 136
MalI GATC 2 cut(s) 237, 575
MboI GATC 2 cut(s) 235, 573
MboII GAAGA 4 cut(s) 176, 211, 224, 432
MlsI TGGCCA 1 cut(s) 405
MluCI AATT 4 cut(s) 7, 285, 365, 502
MluNI TGGCCA 1 cut(s) 405
MlyI GAGTC 1 cut(s) 29
MnlI CCTC 7 cut(s) 52, 63, 120, 141, 160, 388, 585
Mox20I TGGCCA 1 cut(s) 405
Mph1103I ATGCAT 1 cut(s) 420
MroXI GAANNNNTTC 1 cut(s) 369
MscI TGGCCA 1 cut(s) 405
MseI TTAA 2 cut(s) 228, 351
Msp20I TGGCCA 1 cut(s) 405
MspA1I CMGCKG 1 cut(s) 389
MspI CCGG 3 cut(s) 17, 347, 399
MspR9I CCNGG 2 cut(s) 193, 520
Mva1269I GAATGC 1 cut(s) 83
MvaI CCWGG 2 cut(s) 193, 520
MwoI GCNNNNNNNGC 1 cut(s) 395
NdeII GATC 2 cut(s) 235, 573
NlaIII CATG 1 cut(s) 377
NlaIV GGNNCC 1 cut(s) 517
NmeAIII GCCGAG 1 cut(s) 17
NmuCI GTSAC 1 cut(s) 136
NsbI TGCGCA 1 cut(s) 546
NsiI ATGCAT 1 cut(s) 420
PagI TCATGA 1 cut(s) 373
PasI CCCWGGG 1 cut(s) 192
PceI AGGCCT 1 cut(s) 130
PctI GAATGC 1 cut(s) 83
PdmI GAANNNNTTC 1 cut(s) 369
PfeI GAWTC 3 cut(s) 88, 200, 437
PinAI ACCGGT 1 cut(s) 346
PleI GAGTC 1 cut(s) 29
PpsI GAGTC 1 cut(s) 29
Psp6I CCWGG 2 cut(s) 191, 518
PspGI CCWGG 2 cut(s) 191, 518
PspN4I GGNNCC 1 cut(s) 517
PstNI CAGNNNCTG 1 cut(s) 434
RsaI GTAC 3 cut(s) 121, 174, 262
RsaNI GTAC 3 cut(s) 120, 173, 261
SaqAI TTAA 2 cut(s) 228, 351
Sau3AI GATC 2 cut(s) 235, 573
ScaI AGTACT 1 cut(s) 262
SchI GAGTC 1 cut(s) 29
ScrFI CCNGG 2 cut(s) 193, 520
SetI ASST 8 cut(s) 65, 342, 383, 436, 456, 466, 535, 584
SfaNI GCATC 3 cut(s) 44, 405, 590
SmlI CTYRAG 1 cut(s) 58
SmoI CTYRAG 1 cut(s) 58
Sse9I AATT 4 cut(s) 7, 285, 365, 502
SseBI AGGCCT 1 cut(s) 130
SsiI CCGC 1 cut(s) 387
SspMI CTAG 1 cut(s) 249
StuI AGGCCT 1 cut(s) 130
StyD4I CCNGG 2 cut(s) 191, 518
StyI CCWWGG 1 cut(s) 336
TaaI ACNGT 3 cut(s) 119, 281, 540
TaiI ACGT 1 cut(s) 466
TaqI TCGA 1 cut(s) 68
TasI AATT 4 cut(s) 7, 285, 365, 502
TatI WGTACW 3 cut(s) 119, 172, 260
TfiI GAWTC 3 cut(s) 88, 200, 437
Tru1I TTAA 2 cut(s) 228, 351
Tru9I TTAA 2 cut(s) 228, 351
TscAI CASTG 2 cut(s) 229, 286
TseFI GTSAC 1 cut(s) 136
Tsp45I GTSAC 1 cut(s) 136
TspDTI ATGAA 3 cut(s) 177, 362, 390
TspRI CASTG 2 cut(s) 229, 286
XapI RAATTY 1 cut(s) 502
XbaI TCTAGA 1 cut(s) 248
XmnI GAANNNNTTC 1 cut(s) 369
XspI CTAG 1 cut(s) 249
ZrmI AGTACT 1 cut(s) 262
Zsp2I ATGCAT 1 cut(s) 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.