RLG00000006960

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0016830
Physical Location & Seq
Forward (+)
12172722 .. 12174042
1321 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006960

Sequence Viewer

Length: 597 bp
ATGGGAAATTGTGTTCCCGTTCACAAGTCCAAAGACTCGGCCTCAAAACTCCGATGCTCAAGCTATTCGAGGACAGAATGCATCCTGGTTCAAAAGCCTATTCAAGAAAGCGCAGACTGTACACCGAGGCCTCATGTGACTGGTTTTCCAGAACTAAGTGATGAAGAGGATGTACATTTTTGTTCTGACCCCTGGGCAGAATCTGATGTTGAAGATTTCTTCAGTGTTAACAACGATCTTACCCCATCTAGAAGTGATACTCCAATCCACAAAAACAGTGAAATTATAGAAGTGGAAACCCCCAACTTGATAAACCATAAAAACAAATCCAAGGTTCAACCAGTTAAGCAACTGATTGAATTGTTTCATGAAAGCTTTAATGCTGATGAGGGCGCCGGTGGCCATCAACAGATGCATTATGGGTCAGAAGCTGAATCTTCCCTATCTGACCTACCACGAAGTTCAGCAAATGTAAGCCCCTATCATTATTCGGTGGCAAATTTAGTTTCGGGTGCCAGGACAAGAAAAGCTACACAGTTTGCGCAATGCTTCCTGCCAAAGTTGGTGCAGATCATAAGCTTCAGTCAGAGGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

199

Amino Acids

22.08

Weight (kDa)

5.83

Isoelectric Point (pI)

61.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016830)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g23980
malus_domestica MD16G1117200.v1.1
prunus_persica Prupe.1G229000_v2.0.a1
pyrus_communis pycom16g10040
rosa_chinensis RchiOBHm_Chr4g0430641
rosa_laevigata RLG00000006960
rosa_multiflora Rmu_sc0000131.1_g000014
rosa_roxburghii Rroxscaffold_5G00372390
rosa_rugosa Rorug04G0245000
rosa_samantha Rh4AG301000 Rh4BG308100 Rh4CG325200 Rh4DG305700
rosa_wichuraiana Rw4G026120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 543
AccB1I GGYRCC 2 cut(s) 392, 512
AcoI YGGCCR 1 cut(s) 400
AcsI RAATTY 1 cut(s) 499
AcuI CTGAAG 2 cut(s) 205, 565
AcyI GRCGYC 1 cut(s) 393
AfaI GTAC 2 cut(s) 121, 174
AgsI TTSAA 5 cut(s) 92, 104, 212, 338, 359
AjnI CCWGG 3 cut(s) 84, 191, 515
AloI GAACNNNNNNTCC 1 cut(s) 29
AluBI AGCT 5 cut(s) 63, 375, 431, 530, 579
AluI AGCT 5 cut(s) 63, 375, 431, 530, 579
AlwNI CAGNNNCTG 2 cut(s) 203, 431
AoxI GGCC 3 cut(s) 39, 128, 400
ApoI RAATTY 1 cut(s) 499
Asp700I GAANNNNTTC 1 cut(s) 363
AspLEI GCGC 3 cut(s) 113, 395, 544
BalI TGGCCA 1 cut(s) 402
BanI GGYRCC 2 cut(s) 392, 512
BarI GAAGNNNNNNTAC 2 cut(s) 156, 188
BccI CCATC 2 cut(s) 253, 411
BciT130I CCWGG 3 cut(s) 86, 193, 517
BfaI CTAG 1 cut(s) 249
BfoI RGCGCY 1 cut(s) 396
Bme1390I CCNGG 3 cut(s) 86, 193, 517
BmiI GGNNCC 2 cut(s) 394, 514
BmrFI CCNGG 3 cut(s) 86, 193, 517
BmsI GCATC 3 cut(s) 44, 90, 402
BpuEI CTTGAG 1 cut(s) 43
BsaHI GRCGYC 1 cut(s) 393
BsaJI CCNNGG 4 cut(s) 125, 191, 192, 330
Bse118I RCCGGY 1 cut(s) 395
Bse1I ACTGG 2 cut(s) 145, 341
Bse3DI GCAATG 1 cut(s) 551
BseBI CCWGG 3 cut(s) 86, 193, 517
BseDI CCNNGG 4 cut(s) 125, 191, 192, 330
BseGI GGATG 2 cut(s) 81, 175
BseMI GCAATG 1 cut(s) 551
BseNI ACTGG 2 cut(s) 145, 341
BsgI GTGCAG 1 cut(s) 587
BshFI GGCC 3 cut(s) 41, 130, 402
BshNI GGYRCC 2 cut(s) 392, 512
BsiSI CCGG 1 cut(s) 396
BsmI GAATGC 1 cut(s) 83
BsnI GGCC 3 cut(s) 41, 130, 402
Bsp1407I TGTACA 2 cut(s) 119, 172
Bsp143I GATC 2 cut(s) 235, 570
BspANI GGCC 3 cut(s) 41, 130, 402
BspHI TCATGA 1 cut(s) 367
BspLI GGNNCC 2 cut(s) 394, 514
BspT107I GGYRCC 2 cut(s) 392, 512
BsrDI GCAATG 1 cut(s) 551
BsrFI RCCGGY 1 cut(s) 395
BsrGI TGTACA 2 cut(s) 119, 172
BsrI ACTGG 2 cut(s) 145, 341
BssAI RCCGGY 1 cut(s) 395
BssECI CCNNGG 4 cut(s) 125, 191, 192, 330
BssMI GATC 2 cut(s) 235, 570
BssNI GRCGYC 1 cut(s) 393
BssT1I CCWWGG 1 cut(s) 330
Bst2UI CCWGG 3 cut(s) 86, 193, 517
Bst4CI ACNGT 3 cut(s) 119, 278, 537
Bst6I CTCTTC 1 cut(s) 159
BstACI GRCGYC 1 cut(s) 393
BstAUI TGTACA 2 cut(s) 119, 172
BstDEI CTNAG 1 cut(s) 155
BstF5I GGATG 2 cut(s) 81, 175
BstH2I RGCGCY 1 cut(s) 396
BstHHI GCGC 3 cut(s) 113, 395, 544
BstKTI GATC 2 cut(s) 238, 573
BstMBI GATC 2 cut(s) 235, 570
BstMWI GCNNNNNNNGC 1 cut(s) 399
BstNI CCWGG 3 cut(s) 86, 193, 517
BstSCI CCNGG 3 cut(s) 84, 191, 515
BsuRI GGCC 3 cut(s) 41, 130, 402
BtsCI GGATG 2 cut(s) 81, 175
BtsIMutI CAGTG 2 cut(s) 229, 283
CaiI CAGNNNCTG 2 cut(s) 203, 431
CciI TCATGA 1 cut(s) 367
CfoI GCGC 3 cut(s) 113, 395, 544
Cfr10I RCCGGY 1 cut(s) 395
Csp6I GTAC 2 cut(s) 120, 173
CviAII CATG 2 cut(s) 134, 368
CviQI GTAC 2 cut(s) 120, 173
DdeI CTNAG 1 cut(s) 155
DinI GGCGCC 1 cut(s) 394
DpnI GATC 2 cut(s) 237, 572
DpnII GATC 2 cut(s) 235, 570
EaeI YGGCCR 1 cut(s) 400
Eam1104I CTCTTC 1 cut(s) 159
EarI CTCTTC 1 cut(s) 159
Eco130I CCWWGG 1 cut(s) 330
Eco147I AGGCCT 1 cut(s) 130
Eco57I CTGAAG 2 cut(s) 205, 565
EcoRII CCWGG 3 cut(s) 84, 191, 515
EcoT14I CCWWGG 1 cut(s) 330
EcoT22I ATGCAT 2 cut(s) 83, 417
EgeI GGCGCC 1 cut(s) 394
EheI GGCGCC 1 cut(s) 394
ErhI CCWWGG 1 cut(s) 330
FaeI CATG 2 cut(s) 137, 371
FaiI YATR 6 cut(s) 135, 287, 318, 369, 420, 575
FatI CATG 2 cut(s) 133, 367
FokI GGATG 2 cut(s) 68, 182
FspBI CTAG 1 cut(s) 249
FspI TGCGCA 1 cut(s) 543
GlaI GCGC 3 cut(s) 112, 394, 543
HaeII RGCGCY 1 cut(s) 396
HaeIII GGCC 3 cut(s) 41, 130, 402
HapII CCGG 1 cut(s) 396
HhaI GCGC 3 cut(s) 113, 395, 544
Hin1I GRCGYC 1 cut(s) 393
Hin1II CATG 2 cut(s) 137, 371
Hin6I GCGC 3 cut(s) 111, 393, 542
HinP1I GCGC 3 cut(s) 111, 393, 542
HincII GTYRAC 1 cut(s) 229
HindII GTYRAC 1 cut(s) 229
HindIII AAGCTT 2 cut(s) 373, 577
HinfI GANTC 3 cut(s) 35, 200, 434
HpaI GTTAAC 1 cut(s) 229
HpaII CCGG 1 cut(s) 396
Hpy166II GTNNAC 3 cut(s) 22, 122, 229
Hpy188I TCNGA 6 cut(s) 53, 187, 205, 427, 448, 588
Hpy188III TCNNGA 4 cut(s) 104, 149, 249, 368
Hpy8I GTNNAC 3 cut(s) 22, 122, 229
HpyCH4III ACNGT 3 cut(s) 119, 278, 537
HpyCH4V TGCA 3 cut(s) 81, 415, 568
HpyF10VI GCNNNNNNNGC 1 cut(s) 399
HpyF3I CTNAG 1 cut(s) 155
Hsp92I GRCGYC 1 cut(s) 393
Hsp92II CATG 2 cut(s) 137, 371
HspAI GCGC 3 cut(s) 111, 393, 542
KasI GGCGCC 1 cut(s) 392
KspAI GTTAAC 1 cut(s) 229
Kzo9I GATC 2 cut(s) 235, 570
LweI GCATC 3 cut(s) 44, 90, 402
MaeI CTAG 1 cut(s) 249
MaeIII GTNAC 1 cut(s) 136
MalI GATC 2 cut(s) 237, 572
MboI GATC 2 cut(s) 235, 570
MboII GAAGA 4 cut(s) 176, 211, 224, 429
MlsI TGGCCA 1 cut(s) 402
MluCI AATT 4 cut(s) 7, 282, 359, 499
MluNI TGGCCA 1 cut(s) 402
Mly113I GGCGCC 1 cut(s) 393
MlyI GAGTC 1 cut(s) 29
MnlI CCTC 7 cut(s) 52, 63, 120, 141, 160, 382, 582
Mox20I TGGCCA 1 cut(s) 402
Mph1103I ATGCAT 2 cut(s) 83, 417
MroXI GAANNNNTTC 1 cut(s) 363
MscI TGGCCA 1 cut(s) 402
MseI TTAA 3 cut(s) 228, 345, 378
Msp20I TGGCCA 1 cut(s) 402
MspI CCGG 1 cut(s) 396
MspR9I CCNGG 3 cut(s) 86, 193, 517
Mva1269I GAATGC 1 cut(s) 83
MvaI CCWGG 3 cut(s) 86, 193, 517
MwoI GCNNNNNNNGC 1 cut(s) 399
NarI GGCGCC 1 cut(s) 393
NdeII GATC 2 cut(s) 235, 570
NlaIII CATG 2 cut(s) 137, 371
NlaIV GGNNCC 2 cut(s) 394, 514
NmeAIII GCCGAG 1 cut(s) 17
NmuCI GTSAC 1 cut(s) 136
NsbI TGCGCA 1 cut(s) 543
NsiI ATGCAT 2 cut(s) 83, 417
PagI TCATGA 1 cut(s) 367
PasI CCCWGGG 1 cut(s) 192
PceI AGGCCT 1 cut(s) 130
PctI GAATGC 1 cut(s) 83
PdmI GAANNNNTTC 1 cut(s) 363
PfeI GAWTC 2 cut(s) 200, 434
PleI GAGTC 1 cut(s) 29
PluTI GGCGCC 1 cut(s) 396
PpsI GAGTC 1 cut(s) 29
Psp6I CCWGG 3 cut(s) 84, 191, 515
PspGI CCWGG 3 cut(s) 84, 191, 515
PspN4I GGNNCC 2 cut(s) 394, 514
PstNI CAGNNNCTG 2 cut(s) 203, 431
RsaI GTAC 2 cut(s) 121, 174
RsaNI GTAC 2 cut(s) 120, 173
SaqAI TTAA 3 cut(s) 228, 345, 378
Sau3AI GATC 2 cut(s) 235, 570
SchI GAGTC 1 cut(s) 29
ScrFI CCNGG 3 cut(s) 86, 193, 517
SetI ASST 7 cut(s) 65, 336, 377, 433, 453, 532, 581
SfaNI GCATC 3 cut(s) 44, 90, 402
SfoI GGCGCC 1 cut(s) 394
SgrAI CRCCGGYG 1 cut(s) 395
SmlI CTYRAG 1 cut(s) 58
SmoI CTYRAG 1 cut(s) 58
Sse9I AATT 4 cut(s) 7, 282, 359, 499
SseBI AGGCCT 1 cut(s) 130
SspDI GGCGCC 1 cut(s) 392
SspMI CTAG 1 cut(s) 249
StuI AGGCCT 1 cut(s) 130
StyD4I CCNGG 3 cut(s) 84, 191, 515
StyI CCWWGG 1 cut(s) 330
TaaI ACNGT 3 cut(s) 119, 278, 537
TaqI TCGA 1 cut(s) 68
TasI AATT 4 cut(s) 7, 282, 359, 499
TatI WGTACW 2 cut(s) 119, 172
TfiI GAWTC 2 cut(s) 200, 434
Tru1I TTAA 3 cut(s) 228, 345, 378
Tru9I TTAA 3 cut(s) 228, 345, 378
TscAI CASTG 2 cut(s) 229, 283
TseFI GTSAC 1 cut(s) 136
Tsp45I GTSAC 1 cut(s) 136
TspDTI ATGAA 3 cut(s) 177, 356, 384
TspRI CASTG 2 cut(s) 229, 283
XapI RAATTY 1 cut(s) 499
XbaI TCTAGA 1 cut(s) 248
XmnI GAANNNNTTC 1 cut(s) 363
XspI CTAG 1 cut(s) 249
Zsp2I ATGCAT 2 cut(s) 83, 417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.