Rh4AG301000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0016830
Physical Location & Seq
Reverse (-)
61361404 .. 61363014
1611 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG301000.1

Sequence Viewer

Length: 624 bp
ATGTGTACCATTCTTTTTGAAGAGATGGGAAATTGTGTTCCGGTTCACAAGTCCAAAGACTCGGCCTCAAAACTCCGATGCTCAAGCTATTCGAGGACAGAATGCGTCCTGATTCAAAAGCCTATTCAAGAAACCGCAGACTGTACACCGAGGCCTCATGTGACTGGTTTTCCAGAACTAAGTGATGAAGAGGATGTACATTTTTGTTCTGACCCCTGGGTAGAATCTGATGTTGAAGATTTCTTCAGTGTTAACAACGATCTTACCCCATCTAGAAGTGATACTCCAATCCACAAAAACAGTGAAATTATAGAAGTGGAAACCCCCAACTTGATAAACCACAAAAACAAATCCAAGGTTCAACCGGTTAAGCAACTGATTGAATTGTTTAATGAAAGCTTTACCGCTGATGAGGCCGGTGGCCATCAACAGATGCATTATGGGTCAGAAGCTGAATCTTCCCTATCTGACCTACCACGAAGTTCAGCGAATGTAAGCCCCTATCATTATTCGGTGGCAAATTTAGTTTCGGGTGCCAGGACAAGAAAAGCTACACAGTTTGCGCAATGCTTCCTGCCAAAGTTGGTGCAGATCATCAGCTTCAGTCAGAGGAAGAGATGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

207

Amino Acids

23.25

Weight (kDa)

5.61

Isoelectric Point (pI)

63.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016830)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g23980
malus_domestica MD16G1117200.v1.1
prunus_persica Prupe.1G229000_v2.0.a1
pyrus_communis pycom16g10040
rosa_chinensis RchiOBHm_Chr4g0430641
rosa_laevigata RLG00000006960
rosa_multiflora Rmu_sc0000131.1_g000014
rosa_roxburghii Rroxscaffold_5G00372390
rosa_rugosa Rorug04G0245000
rosa_samantha Rh4AG301000 Rh4BG308100 Rh4CG325200 Rh4DG305700
rosa_wichuraiana Rw4G026120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 564
AccB1I GGYRCC 1 cut(s) 533
AciI CCGC 2 cut(s) 135, 405
AcoI YGGCCR 1 cut(s) 421
AcsI RAATTY 1 cut(s) 520
AcuI CTGAAG 2 cut(s) 229, 586
AfaI GTAC 3 cut(s) 7, 145, 198
AgeI ACCGGT 1 cut(s) 364
AgsI TTSAA 6 cut(s) 20, 116, 128, 236, 362, 383
AjnI CCWGG 2 cut(s) 215, 536
AloI GAACNNNNNNTCC 2 cut(s) 21, 53
AluBI AGCT 5 cut(s) 87, 399, 452, 551, 600
AluI AGCT 5 cut(s) 87, 399, 452, 551, 600
AlwNI CAGNNNCTG 1 cut(s) 452
AoxI GGCC 4 cut(s) 63, 152, 414, 421
ApoI RAATTY 1 cut(s) 520
AsiGI ACCGGT 1 cut(s) 364
AspLEI GCGC 1 cut(s) 565
BalI TGGCCA 1 cut(s) 423
BanI GGYRCC 1 cut(s) 533
BarI GAAGNNNNNNTAC 2 cut(s) 180, 212
BccI CCATC 3 cut(s) 19, 277, 432
BciT130I CCWGG 2 cut(s) 217, 538
BfaI CTAG 1 cut(s) 273
Bme1390I CCNGG 2 cut(s) 217, 538
BmiI GGNNCC 1 cut(s) 535
BmrFI CCNGG 2 cut(s) 217, 538
BmsI GCATC 3 cut(s) 68, 423, 608
BpuEI CTTGAG 1 cut(s) 67
BsaJI CCNNGG 4 cut(s) 149, 215, 216, 354
BsaWI WCCGGW 2 cut(s) 40, 364
Bse118I RCCGGY 2 cut(s) 364, 416
Bse1I ACTGG 1 cut(s) 169
Bse3DI GCAATG 1 cut(s) 572
BseBI CCWGG 2 cut(s) 217, 538
BseDI CCNNGG 4 cut(s) 149, 215, 216, 354
BseGI GGATG 1 cut(s) 199
BseMI GCAATG 1 cut(s) 572
BseNI ACTGG 1 cut(s) 169
BsgI GTGCAG 1 cut(s) 608
BshFI GGCC 4 cut(s) 65, 154, 416, 423
BshNI GGYRCC 1 cut(s) 533
BshTI ACCGGT 1 cut(s) 364
BsiSI CCGG 3 cut(s) 41, 365, 417
BsmI GAATGC 1 cut(s) 107
BsnI GGCC 4 cut(s) 65, 154, 416, 423
Bsp1407I TGTACA 2 cut(s) 143, 196
Bsp143I GATC 2 cut(s) 259, 591
BspACI CCGC 2 cut(s) 135, 405
BspANI GGCC 4 cut(s) 65, 154, 416, 423
BspLI GGNNCC 1 cut(s) 535
BspT107I GGYRCC 1 cut(s) 533
BsrDI GCAATG 1 cut(s) 572
BsrFI RCCGGY 2 cut(s) 364, 416
BsrGI TGTACA 2 cut(s) 143, 196
BsrI ACTGG 1 cut(s) 169
BssAI RCCGGY 2 cut(s) 364, 416
BssECI CCNNGG 4 cut(s) 149, 215, 216, 354
BssMI GATC 2 cut(s) 259, 591
BssT1I CCWWGG 1 cut(s) 354
Bst2UI CCWGG 2 cut(s) 217, 538
Bst4CI ACNGT 3 cut(s) 143, 302, 558
Bst6I CTCTTC 3 cut(s) 15, 183, 608
BstAUI TGTACA 2 cut(s) 143, 196
BstDEI CTNAG 1 cut(s) 179
BstF5I GGATG 1 cut(s) 199
BstHHI GCGC 1 cut(s) 565
BstKTI GATC 2 cut(s) 262, 594
BstMBI GATC 2 cut(s) 259, 591
BstMWI GCNNNNNNNGC 1 cut(s) 413
BstNI CCWGG 2 cut(s) 217, 538
BstSCI CCNGG 2 cut(s) 215, 536
BsuRI GGCC 4 cut(s) 65, 154, 416, 423
BtsCI GGATG 1 cut(s) 199
BtsIMutI CAGTG 2 cut(s) 253, 307
CaiI CAGNNNCTG 1 cut(s) 452
CfoI GCGC 1 cut(s) 565
Cfr10I RCCGGY 2 cut(s) 364, 416
CseI GACGC 1 cut(s) 94
Csp6I GTAC 3 cut(s) 6, 144, 197
CspAI ACCGGT 1 cut(s) 364
CviAII CATG 1 cut(s) 158
CviQI GTAC 3 cut(s) 6, 144, 197
DdeI CTNAG 1 cut(s) 179
DpnI GATC 2 cut(s) 261, 593
DpnII GATC 2 cut(s) 259, 591
EaeI YGGCCR 1 cut(s) 421
Eam1104I CTCTTC 3 cut(s) 15, 183, 608
EarI CTCTTC 3 cut(s) 15, 183, 608
Eco130I CCWWGG 1 cut(s) 354
Eco147I AGGCCT 1 cut(s) 154
Eco57I CTGAAG 2 cut(s) 229, 586
EcoRII CCWGG 2 cut(s) 215, 536
EcoT14I CCWWGG 1 cut(s) 354
EcoT22I ATGCAT 1 cut(s) 438
ErhI CCWWGG 1 cut(s) 354
FaeI CATG 1 cut(s) 161
FaiI YATR 3 cut(s) 159, 311, 441
FatI CATG 1 cut(s) 157
FokI GGATG 1 cut(s) 206
FspBI CTAG 1 cut(s) 273
FspI TGCGCA 1 cut(s) 564
GlaI GCGC 1 cut(s) 564
HaeIII GGCC 4 cut(s) 65, 154, 416, 423
HapII CCGG 3 cut(s) 41, 365, 417
HgaI GACGC 1 cut(s) 94
HhaI GCGC 1 cut(s) 565
Hin1II CATG 1 cut(s) 161
Hin6I GCGC 1 cut(s) 563
HinP1I GCGC 1 cut(s) 563
HincII GTYRAC 1 cut(s) 253
HindII GTYRAC 1 cut(s) 253
HindIII AAGCTT 1 cut(s) 397
HinfI GANTC 4 cut(s) 59, 112, 224, 455
HpaI GTTAAC 1 cut(s) 253
HpaII CCGG 3 cut(s) 41, 365, 417
Hpy166II GTNNAC 4 cut(s) 6, 46, 146, 253
Hpy188I TCNGA 6 cut(s) 77, 211, 229, 448, 469, 609
Hpy188III TCNNGA 4 cut(s) 109, 128, 173, 273
Hpy8I GTNNAC 4 cut(s) 6, 46, 146, 253
HpyCH4III ACNGT 3 cut(s) 143, 302, 558
HpyCH4V TGCA 2 cut(s) 436, 589
HpyF10VI GCNNNNNNNGC 1 cut(s) 413
HpyF3I CTNAG 1 cut(s) 179
Hsp92II CATG 1 cut(s) 161
HspAI GCGC 1 cut(s) 563
KspAI GTTAAC 1 cut(s) 253
Kzo9I GATC 2 cut(s) 259, 591
LweI GCATC 3 cut(s) 68, 423, 608
MaeI CTAG 1 cut(s) 273
MaeIII GTNAC 1 cut(s) 160
MalI GATC 2 cut(s) 261, 593
MboI GATC 2 cut(s) 259, 591
MboII GAAGA 5 cut(s) 32, 200, 235, 248, 450
MlsI TGGCCA 1 cut(s) 423
MluCI AATT 4 cut(s) 31, 306, 383, 520
MluNI TGGCCA 1 cut(s) 423
MlyI GAGTC 1 cut(s) 53
MnlI CCTC 7 cut(s) 76, 87, 144, 165, 184, 406, 603
Mox20I TGGCCA 1 cut(s) 423
Mph1103I ATGCAT 1 cut(s) 438
MscI TGGCCA 1 cut(s) 423
MseI TTAA 3 cut(s) 252, 369, 390
Msp20I TGGCCA 1 cut(s) 423
MspA1I CMGCKG 1 cut(s) 407
MspI CCGG 3 cut(s) 41, 365, 417
MspR9I CCNGG 2 cut(s) 217, 538
Mva1269I GAATGC 1 cut(s) 107
MvaI CCWGG 2 cut(s) 217, 538
MwoI GCNNNNNNNGC 1 cut(s) 413
NdeII GATC 2 cut(s) 259, 591
NlaIII CATG 1 cut(s) 161
NlaIV GGNNCC 1 cut(s) 535
NmeAIII GCCGAG 1 cut(s) 41
NmuCI GTSAC 1 cut(s) 160
NsbI TGCGCA 1 cut(s) 564
NsiI ATGCAT 1 cut(s) 438
PasI CCCWGGG 1 cut(s) 216
PceI AGGCCT 1 cut(s) 154
PctI GAATGC 1 cut(s) 107
PfeI GAWTC 3 cut(s) 112, 224, 455
PinAI ACCGGT 1 cut(s) 364
PleI GAGTC 1 cut(s) 53
PpsI GAGTC 1 cut(s) 53
Psp6I CCWGG 2 cut(s) 215, 536
PspGI CCWGG 2 cut(s) 215, 536
PspN4I GGNNCC 1 cut(s) 535
PstNI CAGNNNCTG 1 cut(s) 452
RsaI GTAC 3 cut(s) 7, 145, 198
RsaNI GTAC 3 cut(s) 6, 144, 197
SaqAI TTAA 3 cut(s) 252, 369, 390
Sau3AI GATC 2 cut(s) 259, 591
SchI GAGTC 1 cut(s) 53
ScrFI CCNGG 2 cut(s) 217, 538
SetI ASST 7 cut(s) 89, 360, 401, 454, 474, 553, 602
SfaNI GCATC 3 cut(s) 68, 423, 608
SmlI CTYRAG 1 cut(s) 82
SmoI CTYRAG 1 cut(s) 82
Sse9I AATT 4 cut(s) 31, 306, 383, 520
SseBI AGGCCT 1 cut(s) 154
SsiI CCGC 2 cut(s) 135, 405
SspMI CTAG 1 cut(s) 273
StuI AGGCCT 1 cut(s) 154
StyD4I CCNGG 2 cut(s) 215, 536
StyI CCWWGG 1 cut(s) 354
TaaI ACNGT 3 cut(s) 143, 302, 558
TaqI TCGA 1 cut(s) 92
TasI AATT 4 cut(s) 31, 306, 383, 520
TatI WGTACW 2 cut(s) 143, 196
TfiI GAWTC 3 cut(s) 112, 224, 455
Tru1I TTAA 3 cut(s) 252, 369, 390
Tru9I TTAA 3 cut(s) 252, 369, 390
TscAI CASTG 2 cut(s) 253, 307
TseFI GTSAC 1 cut(s) 160
Tsp45I GTSAC 1 cut(s) 160
TspDTI ATGAA 2 cut(s) 201, 408
TspRI CASTG 2 cut(s) 253, 307
XapI RAATTY 1 cut(s) 520
XbaI TCTAGA 1 cut(s) 272
XspI CTAG 1 cut(s) 273
Zsp2I ATGCAT 1 cut(s) 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.