FvH4_4g25420

Pentatricopeptide repeat-containing protein At1g13040

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Reverse (-)
27198170 .. 27199644
1475 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g25420.t1

Sequence Viewer

Length: 1371 bp
ATGACCCACTACGTGAAGACCGGCCTCATCGACCACGCCCTCCACGTGTTCGACGAAATGACCCAATCAAACTGCCGCGTCTTCAGCGTCGACTACAATCGTTTCATCGGCGTCCTCGTCAAGCACTCCCGTTACGACCTCGCCGAGCATTACTACTACGAGATGGCCCCACAGGGCTTCTCCCTAACCCCCTTCACTTACTCCAGGTTCATTTCCGGCCTGTGTAATGTAAACAACTTTACGTTGATCGAGAAGCTTCTAAGGGACATGGATAGATTAGGTTCCGTCCCCGATATTTGGGCTTTTAATATTTACTTGAATTTACTTTGCCAAGAAAATAGGATACATTATGCTCTGGAGGTGTTTGATAGGATGGCGGACAAGGGGAGGGAGCCGGATGTTGTGTCGTATACTATTGTGATTCATGGGTTGTGTAAAGCTGGGAGGTTCGATAATGCGGTTGAGATTTGGAATGGTATGATTAGTAAAGGGTTTAGGCCTGATACTATTGCGTGCACCGCGCTTGTTGTTGGGTTGTGTGGAGGTGGGAAGGTTGATTTGGCTTATGACCTTGTGATTGGCGAGATGAAGGGTGGTGTGGAGTTTAATAATTTGATTTACAACGCGCTGATTAGTGGGTTTTGTCGAGCGAGGAGGATTGACAAGGCGCAGGCGATTAAGTTGTTTATGAAGAGGAATGGGTGCAAGCCGGATTTGGTGACGCATAATGTGTTGTTGAATTATTGTTGTAATGAGTTCATGTTGGAGGAGGCGGAGAAGTTGATGAGACAAATGGAGAAGATTGGGATGAAGCTGGATGCGTATAGTTATAATGGGTTTCTTAAGGGTCTTTGTAAAGATAATAGACCCGAAAAGGCGTATTTGTTTATGAAGAACATGATGGAGCCTAAAGGTTTGTGTAATGTTGTTTCATTTAATACCATTATTATGGCGTGTTGCAAGGGAGGCCAAACTAGAAGAGCATACAAACTGTTTCAGGAAATGTTTCAAAAGGGAATATTACCGGATGTTGTTACATTTACTATTCTGATAGGAGCTTTTTTAAGAGAAGGTAGTTCAGATGTAGCCAAGAAGCTTCTTGATCAGATGACAGGGATGGATCTGTTGCCTGATCGTATATTTTACACTACAATAATTGATCATCTATGTAAGAGTGGGAAGATTGCAATGGCTTGTGACATGTTCAATGATATGTTAGAGAAGGGAATCACCGCTGATGTGGTTTTATATAATGCTCTCATTAGCGGGCTTTGTAGGGCTTCTAGAGTTACTGAAGCCATGCATTTATATGAGGAAATGCAGACTAGAGGATGCTTTCCTGATGAGAGTTCTTTCCGAGACACTGATTAA

Protein Analysis

457

Amino Acids

51.9

Weight (kDa)

6.79

Isoelectric Point (pI)

30.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 65 - 111 5.6e-06 PPR repeat family
PPR_3 PF13812 85 - 141 5.8e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 97 - 146 1.2e-14 PPR repeat family
PPR_1 PF12854 128 - 160 1.3e-11 PPR repeat
PPR_2 PF13041 132 - 180 3.6e-13 PPR repeat family
PPR PF01535 135 - 165 8e-08 PPR repeat
PPR_3 PF13812 198 - 251 6.4e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 199 - 225 2e-06 PPR repeat
PPR_2 PF13041 205 - 251 4.1e-13 PPR repeat family
PPR_1 PF12854 233 - 266 1.1e-07 PPR repeat
PPR_2 PF13041 240 - 286 2.3e-11 PPR repeat family
PPR_long PF17177 245 - 379 3e-06 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 305 - 335 4.1e-08 PPR repeat
PPR_2 PF13041 308 - 355 1e-16 PPR repeat family
PPR PF01535 310 - 340 8.9e-08 PPR repeat
PPR_3 PF13812 330 - 387 3.8e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 338 - 371 8.8e-08 PPR repeat
PPR_2 PF13041 342 - 378 1e-05 PPR repeat family
TPR_24 PF23276 345 - 440 1.4e-06 Fungal tetratrico peptide repeats
PPR_1 PF12854 374 - 405 8.1e-07 PPR repeat
PPR_2 PF13041 377 - 415 1e-09 PPR repeat family
PPR PF01535 382 - 410 5.8e-06 PPR repeat
PPR_1 PF12854 408 - 441 1.5e-10 PPR repeat
PPR_2 PF13041 413 - 452 2.6e-12 PPR repeat family
PPR PF01535 415 - 445 2.3e-08 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012815)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13040 AT1G13040
fragaria_vesca FvH4_4g25420
malus_domestica MD13G1103100.v1.1 MD16G1103300.v1.1
prunus_persica Prupe.1G242700_v2.0.a1
pyrus_communis pycom13g09010 pycom16g08810
rosa_chinensis RchiOBHm_Chr4g0432731
rosa_laevigata RLG00000006817
rosa_multiflora Rmu_co8522421.1_g000001
rosa_roxburghii Rroxscaffold_5G00374190
rosa_rugosa Rorug04G0262000
rosa_samantha Rh4AG316500 Rh4BG324500 Rh4CG339500 Rh4DG319800
rosa_wichuraiana Rw4G027530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 831
AccI GTMKAC 2 cut(s) 90, 410
AccII CGCG 3 cut(s) 78, 521, 626
AciI CCGC 7 cut(s) 76, 377, 458, 519, 773, 1233, 1266
AclWI GGATC 1 cut(s) 1128
AcsI RAATTY 1 cut(s) 319
AcuI CTGAAG 2 cut(s) 67, 1314
AcvI CACGTG 1 cut(s) 46
AcyI GRCGYC 1 cut(s) 111
AdeI CACNNNGTG 1 cut(s) 13
AfiI CCNNNNNNNGG 1 cut(s) 297
AflII CTTAAG 1 cut(s) 842
AflIII ACRYGT 2 cut(s) 45, 1200
AgsI TTSAA 4 cut(s) 319, 739, 1010, 1207
AjnI CCWGG 1 cut(s) 203
AjuI GAANNNNNNNTTGG 2 cut(s) 542, 574
AluBI AGCT 5 cut(s) 256, 440, 814, 1058, 1096
AluI AGCT 5 cut(s) 256, 440, 814, 1058, 1096
Alw21I GWGCWC 1 cut(s) 518
Alw26I GTCTC 2 cut(s) 781, 1353
Alw44I GTGCAC 1 cut(s) 514
AlwI GGATC 1 cut(s) 1128
AoxI GGCC 5 cut(s) 22, 165, 217, 497, 967
ApaLI GTGCAC 1 cut(s) 514
ApoI RAATTY 1 cut(s) 319
Asp700I GAANNNNTTC 1 cut(s) 1005
AspLEI GCGC 3 cut(s) 523, 628, 670
AspS9I GGNCC 1 cut(s) 166
AsuHPI GGTGA 2 cut(s) 730, 1222
BaeGI GKGCMC 1 cut(s) 518
BbrPI CACGTG 1 cut(s) 46
BbsI GAAGAC 2 cut(s) 23, 73
Bbv12I GWGCWC 1 cut(s) 518
BccI CCATC 4 cut(s) 157, 367, 895, 1111
BciT130I CCWGG 1 cut(s) 205
BciVI GTATCC 1 cut(s) 336
BclI TGATCA 2 cut(s) 1102, 1159
BcoDI GTCTC 2 cut(s) 781, 1353
BfaI CTAG 3 cut(s) 975, 1284, 1326
BfrI CTTAAG 1 cut(s) 842
BfuI GTATCC 1 cut(s) 336
BisI GCNGC 1 cut(s) 76
BlsI GCNGC 1 cut(s) 77
Bme1390I CCNGG 1 cut(s) 205
BmgT120I GGNCC 1 cut(s) 166
BmiI GGNNCC 4 cut(s) 168, 283, 393, 906
BmrFI CCNGG 1 cut(s) 205
BmsI GCATC 2 cut(s) 808, 1322
BpiI GAAGAC 2 cut(s) 23, 73
BpmI CTGGAG 2 cut(s) 187, 377
BsaAI YACGTR 2 cut(s) 13, 46
BsaHI GRCGYC 1 cut(s) 111
BsaWI WCCGGW 1 cut(s) 1024
Bsc4I CCNNNNNNNGG 1 cut(s) 297
Bse118I RCCGGY 1 cut(s) 20
Bse3DI GCAATG 1 cut(s) 1194
BseBI CCWGG 1 cut(s) 205
BseGI GGATG 7 cut(s) 378, 403, 813, 823, 1033, 1122, 1337
BseLI CCNNNNNNNGG 1 cut(s) 297
BseMI GCAATG 1 cut(s) 1194
BseRI GAGGAG 2 cut(s) 667, 782
BseSI GKGCMC 1 cut(s) 518
BseYI CCCAGC 1 cut(s) 440
Bsh1236I CGCG 3 cut(s) 78, 521, 626
BshFI GGCC 5 cut(s) 24, 167, 219, 499, 969
BsiHKAI GWGCWC 1 cut(s) 518
BsiSI CCGG 5 cut(s) 21, 216, 395, 710, 1025
BslFI GGGAC 2 cut(s) 272, 278
BslI CCNNNNNNNGG 1 cut(s) 297
BsmAI GTCTC 2 cut(s) 781, 1353
BsmFI GGGAC 2 cut(s) 272, 278
BsnI GGCC 5 cut(s) 24, 167, 219, 499, 969
Bsp1286I GDGCHC 1 cut(s) 518
Bsp143I GATC 5 cut(s) 246, 1102, 1120, 1132, 1159
BspACI CCGC 7 cut(s) 76, 377, 458, 519, 773, 1233, 1266
BspANI GGCC 5 cut(s) 24, 167, 219, 499, 969
BspFNI CGCG 3 cut(s) 78, 521, 626
BspLI GGNNCC 4 cut(s) 168, 283, 393, 906
BspPI GGATC 1 cut(s) 1128
BspQI GCTCTTC 1 cut(s) 973
BspTI CTTAAG 1 cut(s) 842
BsrDI GCAATG 1 cut(s) 1194
BsrFI RCCGGY 1 cut(s) 20
BssAI RCCGGY 1 cut(s) 20
BssMI GATC 5 cut(s) 246, 1102, 1120, 1132, 1159
BssNAI GTATAC 1 cut(s) 411
BssNI GRCGYC 1 cut(s) 111
Bst1107I GTATAC 1 cut(s) 411
Bst2UI CCWGG 1 cut(s) 205
Bst4CI ACNGT 1 cut(s) 993
Bst6I CTCTTC 2 cut(s) 686, 973
BstACI GRCGYC 1 cut(s) 111
BstAFI CTTAAG 1 cut(s) 842
BstBAI YACGTR 2 cut(s) 13, 46
BstC8I GCNNGC 4 cut(s) 514, 672, 707, 1268
BstDEI CTNAG 1 cut(s) 260
BstF5I GGATG 7 cut(s) 378, 403, 813, 823, 1033, 1122, 1337
BstFNI CGCG 3 cut(s) 78, 521, 626
BstHHI GCGC 3 cut(s) 523, 628, 670
BstKTI GATC 5 cut(s) 249, 1105, 1123, 1135, 1162
BstMAI GTCTC 2 cut(s) 781, 1353
BstMBI GATC 5 cut(s) 246, 1102, 1120, 1132, 1159
BstMWI GCNNNNNNNGC 3 cut(s) 84, 518, 966
BstNI CCWGG 1 cut(s) 205
BstNSI RCATGY 1 cut(s) 1204
BstSCI CCNGG 1 cut(s) 203
BstSLI GKGCMC 1 cut(s) 518
BstUI CGCG 3 cut(s) 78, 521, 626
BstV2I GAAGAC 2 cut(s) 23, 73
BstX2I RGATCY 1 cut(s) 1120
BstXI CCANNNNNNTGG 1 cut(s) 949
BstYI RGATCY 1 cut(s) 1120
BstZ17I GTATAC 1 cut(s) 411
BsuI GTATCC 1 cut(s) 336
BsuRI GGCC 5 cut(s) 24, 167, 219, 499, 969
BtsCI GGATG 7 cut(s) 378, 403, 813, 823, 1033, 1122, 1337
BtsIMutI CAGTG 1 cut(s) 1362
Cac8I GCNNGC 4 cut(s) 514, 672, 707, 1268
CfoI GCGC 3 cut(s) 523, 628, 670
Cfr10I RCCGGY 1 cut(s) 20
Cfr13I GGNCC 1 cut(s) 166
CseI GACGC 4 cut(s) 67, 76, 100, 730
CviAII CATG 6 cut(s) 268, 425, 760, 898, 1201, 1300
DdeI CTNAG 1 cut(s) 260
DpnI GATC 5 cut(s) 248, 1104, 1122, 1134, 1161
DpnII GATC 5 cut(s) 246, 1102, 1120, 1132, 1159
DraIII CACNNNGTG 1 cut(s) 13
Eam1104I CTCTTC 2 cut(s) 686, 973
EarI CTCTTC 2 cut(s) 686, 973
EciI GGCGGA 2 cut(s) 392, 788
Eco147I AGGCCT 1 cut(s) 499
Eco57I CTGAAG 2 cut(s) 67, 1314
Eco72I CACGTG 1 cut(s) 46
EcoRII CCWGG 1 cut(s) 203
EcoT22I ATGCAT 1 cut(s) 1305
FaeI CATG 6 cut(s) 271, 428, 763, 901, 1204, 1303
FaqI GGGAC 2 cut(s) 272, 278
FatI CATG 6 cut(s) 267, 424, 759, 897, 1200, 1299
FauI CCCGC 1 cut(s) 1259
FbaI TGATCA 2 cut(s) 1102, 1159
FblI GTMKAC 2 cut(s) 90, 410
Fnu4HI GCNGC 1 cut(s) 76
FokI GGATG 7 cut(s) 385, 410, 820, 830, 1040, 1129, 1344
Fsp4HI GCNGC 1 cut(s) 76
FspBI CTAG 3 cut(s) 975, 1284, 1326
GlaI GCGC 3 cut(s) 522, 627, 669
GluI GCNGC 1 cut(s) 76
GsaI CCCAGC 1 cut(s) 444
GsuI CTGGAG 2 cut(s) 187, 377
HaeIII GGCC 5 cut(s) 24, 167, 219, 499, 969
HapII CCGG 5 cut(s) 21, 216, 395, 710, 1025
HgaI GACGC 4 cut(s) 67, 76, 100, 730
HhaI GCGC 3 cut(s) 523, 628, 670
Hin1I GRCGYC 1 cut(s) 111
Hin1II CATG 6 cut(s) 271, 428, 763, 901, 1204, 1303
Hin6I GCGC 3 cut(s) 521, 626, 668
HinP1I GCGC 3 cut(s) 521, 626, 668
HincII GTYRAC 1 cut(s) 91
HindII GTYRAC 1 cut(s) 91
HindIII AAGCTT 2 cut(s) 254, 1094
HinfI GANTC 2 cut(s) 421, 1227
HpaII CCGG 5 cut(s) 21, 216, 395, 710, 1025
HphI GGTGA 2 cut(s) 730, 1222
Hpy166II GTNNAC 4 cut(s) 91, 232, 411, 516
Hpy188I TCNGA 4 cut(s) 1050, 1081, 1107, 1358
Hpy188III TCNNGA 6 cut(s) 250, 356, 998, 1100, 1284, 1340
Hpy8I GTNNAC 4 cut(s) 91, 232, 411, 516
Hpy99I CGWCG 2 cut(s) 56, 92
HpyAV CCTTC 5 cut(s) 202, 544, 583, 1064, 1216
HpyCH4III ACNGT 1 cut(s) 993
HpyCH4IV ACGT 3 cut(s) 12, 45, 242
HpyCH4V TGCA 6 cut(s) 516, 705, 960, 1187, 1303, 1321
HpyF10VI GCNNNNNNNGC 3 cut(s) 84, 518, 966
HpyF3I CTNAG 1 cut(s) 260
HpySE526I ACGT 3 cut(s) 12, 45, 242
Hsp92I GRCGYC 1 cut(s) 111
Hsp92II CATG 6 cut(s) 271, 428, 763, 901, 1204, 1303
HspAI GCGC 3 cut(s) 521, 626, 668
Ksp22I TGATCA 2 cut(s) 1102, 1159
Kzo9I GATC 5 cut(s) 246, 1102, 1120, 1132, 1159
LguI GCTCTTC 1 cut(s) 973
LmnI GCTCC 3 cut(s) 391, 904, 1055
LweI GCATC 2 cut(s) 808, 1322
MaeI CTAG 3 cut(s) 975, 1284, 1326
MaeII ACGT 3 cut(s) 12, 45, 242
MaeIII GTNAC 5 cut(s) 131, 718, 1033, 1196, 1288
MalI GATC 5 cut(s) 248, 1104, 1122, 1134, 1161
MboI GATC 5 cut(s) 246, 1102, 1120, 1132, 1159
MboII GAAGA 7 cut(s) 28, 73, 703, 811, 904, 990, 1192
MflI RGATCY 1 cut(s) 1120
MhlI GDGCHC 1 cut(s) 518
MluCI AATT 4 cut(s) 319, 610, 739, 1155
MmeI TCCRAC 1 cut(s) 744
Mph1103I ATGCAT 1 cut(s) 1305
MroXI GAANNNNTTC 1 cut(s) 1005
MseI TTAA 7 cut(s) 306, 606, 678, 843, 936, 1064, 1369
MslI CAYNNNNRTG 2 cut(s) 947, 1308
MspA1I CMGCKG 1 cut(s) 1235
MspCI CTTAAG 1 cut(s) 842
MspI CCGG 5 cut(s) 21, 216, 395, 710, 1025
MspR9I CCNGG 1 cut(s) 205
MvaI CCWGG 1 cut(s) 205
MvnI CGCG 3 cut(s) 78, 521, 626
MwoI GCNNNNNNNGC 3 cut(s) 84, 518, 966
NdeII GATC 5 cut(s) 246, 1102, 1120, 1132, 1159
NlaIII CATG 6 cut(s) 271, 428, 763, 901, 1204, 1303
NlaIV GGNNCC 4 cut(s) 168, 283, 393, 906
NmeAIII GCCGAG 1 cut(s) 169
NmuCI GTSAC 2 cut(s) 718, 1196
NsiI ATGCAT 1 cut(s) 1305
NspI RCATGY 1 cut(s) 1204
PceI AGGCCT 1 cut(s) 499
PciI ACATGT 1 cut(s) 1200
PciSI GCTCTTC 1 cut(s) 973
PcsI WCGNNNNNNNCGW 4 cut(s) 42, 51, 114, 141
PdmI GAANNNNTTC 1 cut(s) 1005
PfeI GAWTC 2 cut(s) 421, 1227
PkrI GCNGC 1 cut(s) 77
PmaCI CACGTG 1 cut(s) 46
PmlI CACGTG 1 cut(s) 46
Ppu21I YACGTR 2 cut(s) 13, 46
PscI ACATGT 1 cut(s) 1200
PsiI TTATAA 1 cut(s) 831
Psp6I CCWGG 1 cut(s) 203
PspCI CACGTG 1 cut(s) 46
PspFI CCCAGC 1 cut(s) 440
PspGI CCWGG 1 cut(s) 203
PspN4I GGNNCC 4 cut(s) 168, 283, 393, 906
PspPI GGNCC 1 cut(s) 166
PsuI RGATCY 1 cut(s) 1120
RseI CAYNNNNRTG 2 cut(s) 947, 1308
SalI GTCGAC 1 cut(s) 89
SapI GCTCTTC 1 cut(s) 973
SaqAI TTAA 7 cut(s) 306, 606, 678, 843, 936, 1064, 1369
SatI GCNGC 1 cut(s) 76
Sau3AI GATC 5 cut(s) 246, 1102, 1120, 1132, 1159
Sau96I GGNCC 1 cut(s) 166
ScrFI CCNGG 1 cut(s) 205
SduI GDGCHC 1 cut(s) 518
SfaNI GCATC 2 cut(s) 808, 1322
SmiMI CAYNNNNRTG 2 cut(s) 947, 1308
SmlI CTYRAG 1 cut(s) 842
SmoI CTYRAG 1 cut(s) 842
Sse9I AATT 4 cut(s) 319, 610, 739, 1155
SseBI AGGCCT 1 cut(s) 499
SsiI CCGC 7 cut(s) 76, 377, 458, 519, 773, 1233, 1266
SspI AATATT 2 cut(s) 310, 1020
SspMI CTAG 3 cut(s) 975, 1284, 1326
StuI AGGCCT 1 cut(s) 499
StyD4I CCNGG 1 cut(s) 203
TaaI ACNGT 1 cut(s) 993
TaiI ACGT 3 cut(s) 15, 48, 245
TaqI TCGA 6 cut(s) 30, 51, 90, 249, 450, 646
TasI AATT 4 cut(s) 319, 610, 739, 1155
TauI GCSGC 1 cut(s) 78
TfiI GAWTC 2 cut(s) 421, 1227
Tru1I TTAA 7 cut(s) 306, 606, 678, 843, 936, 1064, 1369
Tru9I TTAA 7 cut(s) 306, 606, 678, 843, 936, 1064, 1369
TscAI CASTG 1 cut(s) 1369
TseFI GTSAC 2 cut(s) 718, 1196
Tsp45I GTSAC 2 cut(s) 718, 1196
TspDTI ATGAA 9 cut(s) 94, 199, 413, 602, 704, 748, 824, 905, 921
TspGWI ACGGA 1 cut(s) 274
TspRI CASTG 1 cut(s) 1369
Vha464I CTTAAG 1 cut(s) 842
VneI GTGCAC 1 cut(s) 514
XapI RAATTY 1 cut(s) 319
XbaI TCTAGA 1 cut(s) 1283
XceI RCATGY 1 cut(s) 1204
XmiI GTMKAC 2 cut(s) 90, 410
XmnI GAANNNNTTC 1 cut(s) 1005
XspI CTAG 3 cut(s) 975, 1284, 1326
Zsp2I ATGCAT 1 cut(s) 1305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.