RLG00000006817

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0012815
Physical Location & Seq
Forward (+)
10775572 .. 10781632
6061 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006817

Sequence Viewer

Length: 2658 bp
ATGTATCACAGTCTCGGCGTCCACCGCCTCATCTACCGCAGCCGCATGGTGCACTATATCAAAACCGGCCTCATCGATCACGCCCTCCAGGTGTTCGACGAAATGACTCAATCAAATTGCCGCGTGTTCAGCATAGATTACAATCGCTTCATTGGAGTGCTGGTCAAGCACTCGCGTTACGACCTCGCCGAGCATTATTACTACGAAATGGCGCCGCAAGGCTTCTCTCTAACCCCATTCACTTACTCGAGATTTATTTCTGGGTTGTGTAATATCAAGAATTTTACTCTCATTGAGAAGCTTCTTCGAGACATGGAGAGGCTCGGGTGTGTGCCTGATATTTGGGCTTTTAATATATATTTGAATCTTCTCTGCCAAGAAAATAGGATACAGTTGGCTCTGGAAGTGTTTGATAGGATGGTTGACAAGGGGAGAGAGCCGGATGTTGTATCGTATACTATAGTTATTGATGGGTTGTGTAAAGCTGGAAAGTTTGATAATGCAGTTGAGGTTTGGAATGGTATGACTAGTAAAGGGTTTAGGCCTGATACTATTGCGTGCACCGCGCTTGTTGTTGGTTTGTGTGGAGGTGGAAAGGTTGATTTGGCTTATCACCTTGTGATTGGTGAGATGAAGGGTGGAGTGAAGTTCAATAATTTGATGTATAATGCGCTGATTAGCGGGTTTTGTCGAGCTCGTAGAATTGATAAGGCACAGGCCATTAAGTGGTTTATGAAGAGGAATGGGTGCCAGCCGGATTTGGTGACTCACAATGTGTTGTTGAATTATTGTTGTAATGAGTTCATGTTGGAGGAGGCAGAGAAGTTGATGAAACAAATGGAGAAGAGTGGGATGGAACTCGATGCGTATAGTTATAATGGGTTGCTCAAGGGCCTTTGTAAAGATAATAGACCGGAAAAGGCATATTTGTTGATGAGGAACGTGATGGAGCCAAAAGGTTTGTGTAATGTTGTTTCATTTAATACCATCATTACAGCATTTTGCAAGGCAGGCCAGACTAGAAGGGCGTACAAACTGTTTGAGGAAATGATTCAAAAGGAAATTTTACCTGATGTGGTTACATTTACCATTCTGATCGAAGCTTTATTAAGAGAAGGTAGTTCAGATATAGCCAAGAAGCTTCTTGATCAGATGACAGGGATGGATCTGTTACCTGATCGTATATTTTACACTACAATAATTGATCACCTATGTAAGAGTGGGAAGATTGCAATGGCTTGTGACGTTTTCAATGATATGTTAGACAAGGGAATCACTGCTGATGTGGTTTTGTATAATGCTCTCATTAGCGGGCTTTGCAGGGCTTCGAGAGTGGCTGAAGCCATGCATTTATATGAGGAAATGCAGACTAGAGGATGCTGTCCTGATGAGGTAACTTTCAAAGTGATAATTAGAGGTCTTATAAGAGACAAGAGGCTTTCTGTGGCTTGTGGGTTGGTGATTTCATCTCAACAAGCCTGTCTCGTTTCTACCTTGTTCCTCTTCCTGGCAAGTGCAGGATGGAACCTTGGACAACCAGATGATTCGAAGAGCATTATGATTACATTGATGCAGCATGCATGGCGCTCCTTGAGCCCATATCAAACACAGCAGCAAGGCCAATATCCCGAGTCACCACCACCTGGTTCATTTGTGCCACTACCACAGTATCAAGGTCAGCCCTCTGGACCACCGCCACCTAGTCCAGAATGGTCTGAACCACGGCAACCAATTCTGCGTGAGTCAGCCCCAACCCGTCCCCGGGCGAAGTATAAAGGCCGCCAAGCTCGGCCGCTAGGTCCCTTGGAGTCAATTCCTGACCATGAGCAAGACCAACATCATCGGCCAAAGAAACAAAGCCGCCCTTCTCAGCCACCACCAGTACCATTGGCACCAACTCCTCACCATGATCAAGACCAACAACATCCTGACCCGAAGCATCAAGGCCACGACTCCCTGCCACTAGTCCCAGGGGCGGCACCAATCCCACACCATGCTCAAGACCACCAAACGCCACAACACCATACACCACATGGTTTGCATGAACAGCGACACGGTTCACAGCGGTTGCGCATGCCACAACCTCAACAAACCAACTTCTTCACATGGTCCTTAGGCGTCTGCTGCGCCATTTTTTGGTTCCTCATAATCTTAGCAGGTCTCATTGTCCTCATTGTCTATCTCGTCTTTCGTCCTCGGACCCCAAAGTTCGAAATTTCCACTGCCACACTAAACGCAGCATATCTCGACATGGGGTATCTCCTCAACGCGGACCTTACTGTGCTAGTAAACTTCACCAACCCGAACAAGAAGGTGAGCGTCTACTTCAGTCCTATGTACATTTATGCTTACTATGGGAACACCCTCGTTGCTACCACATACATTGAACCCTTCACTGCACACAAGCATCAGTCCATGTTTGCAAGTGTTCACATGGTGGCTAGTCAGGTTCCTCTCGGATTGCTCGAAAGCCAAAGGCTGAAGAAGCAGCTGGAGAACAGTAGAGCTGGCTTCGAATTCAAAGGCTACTTCAGAGCACGAGCTAATTTCGGAAGCCTGTTGCGATACTCTTATAAATTACACGGCGACTGCAACGTTGTGTTCTCTAGACCTCCTGATGGGGTTATGGTTCATAGAAAATGCAAGACGAGACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

886

Amino Acids

100.48

Weight (kDa)

8.85

Isoelectric Point (pI)

41.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 80 - 125 1.1e-06 PPR repeat family
PPR_2 PF13041 112 - 161 1.4e-15 PPR repeat family
PPR_1 PF12854 143 - 175 1.4e-11 PPR repeat
PPR_2 PF13041 147 - 195 3.1e-13 PPR repeat family
PPR PF01535 150 - 180 2.4e-07 PPR repeat
PPR_3 PF13812 213 - 266 2.5e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 214 - 240 3.4e-06 PPR repeat
PPR_2 PF13041 221 - 266 4.7e-12 PPR repeat family
PPR_1 PF12854 248 - 281 9.3e-07 PPR repeat
PPR_2 PF13041 255 - 301 6.3e-13 PPR repeat family
PPR_1 PF12854 320 - 350 1.8e-10 PPR repeat
PPR_2 PF13041 323 - 370 5.1e-17 PPR repeat family
PPR PF01535 325 - 354 1.3e-07 PPR repeat
PPR_3 PF13812 345 - 402 1.8e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 354 - 386 1.3e-06 PPR repeat
PPR_1 PF12854 389 - 420 1.5e-06 PPR repeat
PPR_2 PF13041 392 - 430 2.7e-09 PPR repeat family
PPR_3 PF13812 416 - 471 4.4e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 423 - 456 1.5e-10 PPR repeat
PPR_2 PF13041 428 - 475 1.8e-16 PPR repeat family
PPR PF01535 430 - 460 9.5e-08 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012815)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13040 AT1G13040
fragaria_vesca FvH4_4g25420
malus_domestica MD13G1103100.v1.1 MD16G1103300.v1.1
prunus_persica Prupe.1G242700_v2.0.a1
pyrus_communis pycom13g09010 pycom16g08810
rosa_chinensis RchiOBHm_Chr4g0432731
rosa_laevigata RLG00000006817
rosa_multiflora Rmu_co8522421.1_g000001
rosa_roxburghii Rroxscaffold_5G00374190
rosa_rugosa Rorug04G0262000
rosa_samantha Rh4AG316500 Rh4BG324500 Rh4CG339500 Rh4DG319800
rosa_wichuraiana Rw4G027530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 876, 1424, 2574
Acc16I TGCGCA 1 cut(s) 2072
Acc36I ACCTGC 1 cut(s) 2147
AccB1I GGYRCC 4 cut(s) 211, 747, 1891, 1978
AccB7I CCANNNNNTGG 3 cut(s) 726, 1643, 2136
AccI GTMKAC 2 cut(s) 455, 2322
AccII CGCG 4 cut(s) 123, 175, 566, 2270
AclI AACGTT 1 cut(s) 2595
AclWI GGATC 1 cut(s) 1173
AcoI YGGCCR 2 cut(s) 1790, 1844
AcsI RAATTY 4 cut(s) 280, 1062, 2214, 2516
AcuI CTGAAG 4 cut(s) 1359, 2311, 2501, 2515
AcyI GRCGYC 3 cut(s) 18, 212, 2118
AdeI CACNNNGTG 3 cut(s) 619, 775, 2437
AfaI GTAC 3 cut(s) 1031, 1884, 2339
AfiI CCNNNNNNNGG 9 cut(s) 726, 1507, 1643, 1761, 1762, 1975, 2136, 2269, 2618
AgsI TTSAA 8 cut(s) 364, 652, 784, 1055, 1252, 1402, 2387, 2521
AhlI ACTAGT 2 cut(s) 527, 1963
AjnI CCWGG 4 cut(s) 87, 1506, 1642, 1969
AluBI AGCT 9 cut(s) 301, 485, 695, 1103, 1141, 1787, 2491, 2507, 2543
AluI AGCT 9 cut(s) 301, 485, 695, 1103, 1141, 1787, 2491, 2507, 2543
Alw21I GWGCWC 4 cut(s) 54, 563, 697, 2539
Alw26I GTCTC 6 cut(s) 17, 303, 1422, 1487, 2165, 2644
Alw44I GTGCAC 2 cut(s) 50, 559
AlwI GGATC 1 cut(s) 1173
Ama87I CYCGRG 4 cut(s) 247, 323, 1628, 1761
ApaLI GTGCAC 2 cut(s) 50, 559
ApeKI GCWGC 6 cut(s) 39, 1573, 1612, 2124, 2237, 2488
ApoI RAATTY 4 cut(s) 280, 1062, 2214, 2516
Asp700I GAANNNNTTC 1 cut(s) 1050
AspLEI GCGC 6 cut(s) 214, 568, 673, 1587, 2073, 2129
AspS9I GGNCC 6 cut(s) 892, 1688, 1799, 2109, 2199, 2272
AsuC2I CCSGG 2 cut(s) 1762, 1763
AsuHPI GGTGA 9 cut(s) 605, 638, 775, 1199, 1471, 1626, 1895, 2287, 2326
AsuII TTCGAA 3 cut(s) 1547, 2211, 2514
AvaI CYCGRG 4 cut(s) 247, 323, 1628, 1761
AvaII GGWCC 5 cut(s) 1688, 1799, 2109, 2199, 2272
AxyI CCTNAGG 1 cut(s) 2113
BaeGI GKGCMC 2 cut(s) 54, 563
BaeI ACNNNNGTAYC 2 cut(s) 1652, 1685
BanI GGYRCC 4 cut(s) 211, 747, 1891, 1978
BanII GRGCYC 2 cut(s) 697, 1598
BauI CACGAG 1 cut(s) 2538
Bbv12I GWGCWC 4 cut(s) 54, 563, 697, 2539
BbvI GCAGC 6 cut(s) 51, 1585, 1624, 2111, 2249, 2500
BccI CCATC 8 cut(s) 412, 464, 847, 940, 995, 1156, 1515, 2612
BceAI ACGGC 2 cut(s) 1739, 2599
BciT130I CCWGG 4 cut(s) 89, 1508, 1644, 1971
BciVI GTATCC 1 cut(s) 381
BclI TGATCA 3 cut(s) 1147, 1204, 1909
BcnI CCSGG 2 cut(s) 1762, 1763
BcoDI GTCTC 6 cut(s) 17, 303, 1422, 1487, 2165, 2644
BcuI ACTAGT 2 cut(s) 527, 1963
BfaI CTAG 9 cut(s) 528, 1020, 1371, 1701, 1796, 1964, 2285, 2442, 2607
BfmI CTRYAG 1 cut(s) 459
BfoI RGCGCY 2 cut(s) 215, 1588
BfuAI ACCTGC 1 cut(s) 2147
BfuI GTATCC 1 cut(s) 381
Bme1390I CCNGG 6 cut(s) 89, 1508, 1644, 1762, 1763, 1971
Bme18I GGWCC 5 cut(s) 1688, 1799, 2109, 2199, 2272
BmeT110I CYCGRG 4 cut(s) 247, 323, 1628, 1761
BmgT120I GGNCC 6 cut(s) 892, 1688, 1799, 2109, 2199, 2272
BmrFI CCNGG 6 cut(s) 89, 1508, 1644, 1762, 1763, 1971
BmsI GCATC 5 cut(s) 853, 1367, 1560, 1948, 2416
BpmI CTGGAG 2 cut(s) 71, 2513
Bpu14I TTCGAA 3 cut(s) 1547, 2211, 2514
BpuEI CTTGAG 3 cut(s) 872, 1612, 1983
BpuMI CCSGG 2 cut(s) 1762, 1763
Bsa29I ATCGAT 1 cut(s) 75
BsaBI GATNNNNATC 1 cut(s) 141
BsaHI GRCGYC 3 cut(s) 18, 212, 2118
BsaI GGTCTC 1 cut(s) 2165
BsaJI CCNNGG 8 cut(s) 1528, 1721, 1760, 1761, 1803, 1969, 1970, 2195
BsaWI WCCGGW 1 cut(s) 913
BsaXI ACNNNNNCTCC 2 cut(s) 147, 177
Bsc4I CCNNNNNNNGG 9 cut(s) 726, 1507, 1643, 1761, 1762, 1975, 2136, 2269, 2618
Bse118I RCCGGY 1 cut(s) 65
Bse1I ACTGG 1 cut(s) 1880
Bse21I CCTNAGG 1 cut(s) 2113
Bse3DI GCAATG 1 cut(s) 1239
Bse8I GATNNNNATC 1 cut(s) 141
BseBI CCWGG 4 cut(s) 89, 1508, 1644, 1971
BseCI ATCGAT 1 cut(s) 75
BseDI CCNNGG 8 cut(s) 1528, 1721, 1760, 1761, 1803, 1969, 1970, 2195
BseGI GGATG 7 cut(s) 423, 448, 858, 1167, 1382, 1526, 1924
BseJI GATNNNNATC 1 cut(s) 141
BseLI CCNNNNNNNGG 9 cut(s) 726, 1507, 1643, 1761, 1762, 1975, 2136, 2269, 2618
BseMI GCAATG 1 cut(s) 1239
BseMII CTCAG 1 cut(s) 1883
BseNI ACTGG 1 cut(s) 1880
BseRI GAGGAG 3 cut(s) 827, 1890, 2252
BseSI GKGCMC 2 cut(s) 54, 563
BseX3I CGGCCG 1 cut(s) 1790
BseXI GCAGC 6 cut(s) 51, 1585, 1624, 2111, 2249, 2500
BsgI GTGCAG 2 cut(s) 1536, 2382
Bsh1236I CGCG 4 cut(s) 123, 175, 566, 2270
Bsh1285I CGRYCG 1 cut(s) 1793
BshNI GGYRCC 4 cut(s) 211, 747, 1891, 1978
BshVI ATCGAT 1 cut(s) 75
BsiEI CGRYCG 1 cut(s) 1793
BsiHKAI GWGCWC 4 cut(s) 54, 563, 697, 2539
BsiHKCI CYCGRG 4 cut(s) 247, 323, 1628, 1761
BsiSI CCGG 5 cut(s) 66, 440, 755, 914, 1762
BslFI GGGAC 3 cut(s) 1743, 1785, 1952
BslI CCNNNNNNNGG 9 cut(s) 726, 1507, 1643, 1761, 1762, 1975, 2136, 2269, 2618
BsmAI GTCTC 6 cut(s) 17, 303, 1422, 1487, 2165, 2644
BsmFI GGGAC 3 cut(s) 1743, 1785, 1952
Bso31I GGTCTC 1 cut(s) 2165
BsoBI CYCGRG 4 cut(s) 247, 323, 1628, 1761
Bsp119I TTCGAA 3 cut(s) 1547, 2211, 2514
Bsp1286I GDGCHC 5 cut(s) 54, 563, 697, 1598, 2539
Bsp1407I TGTACA 1 cut(s) 2337
Bsp143I GATC 7 cut(s) 76, 1095, 1147, 1165, 1177, 1204, 1909
BspCNI CTCAG 1 cut(s) 1882
BspDI ATCGAT 1 cut(s) 75
BspFNI CGCG 4 cut(s) 123, 175, 566, 2270
BspMI ACCTGC 1 cut(s) 2147
BspPI GGATC 1 cut(s) 1173
BspQI GCTCTTC 1 cut(s) 1544
BspT104I TTCGAA 3 cut(s) 1547, 2211, 2514
BspT107I GGYRCC 4 cut(s) 211, 747, 1891, 1978
BspTNI GGTCTC 1 cut(s) 2165
BsrDI GCAATG 1 cut(s) 1239
BsrFI RCCGGY 1 cut(s) 65
BsrGI TGTACA 1 cut(s) 2337
BsrI ACTGG 1 cut(s) 1880
BssAI RCCGGY 1 cut(s) 65
BssECI CCNNGG 8 cut(s) 1528, 1721, 1760, 1761, 1803, 1969, 1970, 2195
BssMI GATC 7 cut(s) 76, 1095, 1147, 1165, 1177, 1204, 1909
BssNAI GTATAC 1 cut(s) 456
BssNI GRCGYC 3 cut(s) 18, 212, 2118
BssSI CACGAG 1 cut(s) 2538
BssT1I CCWWGG 2 cut(s) 1528, 1803
Bst1107I GTATAC 1 cut(s) 456
Bst2BI CACGAG 1 cut(s) 2538
Bst2UI CCWGG 4 cut(s) 89, 1508, 1644, 1971
Bst4CI ACNGT 7 cut(s) 11, 393, 1038, 1668, 2057, 2281, 2501
Bst6I CTCTTC 4 cut(s) 731, 839, 1508, 1544
BstACI GRCGYC 3 cut(s) 18, 212, 2118
BstAUI TGTACA 1 cut(s) 2337
BstBI TTCGAA 3 cut(s) 1547, 2211, 2514
BstC8I GCNNGC 7 cut(s) 559, 752, 1012, 1313, 1578, 2075, 2509
BstDEI CTNAG 3 cut(s) 1869, 2113, 2152
BstDSI CCRYGG 1 cut(s) 1721
BstF5I GGATG 7 cut(s) 423, 448, 858, 1167, 1382, 1526, 1924
BstFNI CGCG 4 cut(s) 123, 175, 566, 2270
BstH2I RGCGCY 2 cut(s) 215, 1588
BstHHI GCGC 6 cut(s) 214, 568, 673, 1587, 2073, 2129
BstKTI GATC 7 cut(s) 79, 1098, 1150, 1168, 1180, 1207, 1912
BstMAI GTCTC 6 cut(s) 17, 303, 1422, 1487, 2165, 2644
BstMBI GATC 7 cut(s) 76, 1095, 1147, 1165, 1177, 1204, 1909
BstMCI CGRYCG 1 cut(s) 1793
BstNI CCWGG 4 cut(s) 89, 1508, 1644, 1971
BstNSI RCATGY 2 cut(s) 1580, 2077
BstSCI CCNGG 6 cut(s) 87, 1506, 1642, 1760, 1761, 1969
BstSFI CTRYAG 1 cut(s) 459
BstSLI GKGCMC 2 cut(s) 54, 563
BstUI CGCG 4 cut(s) 123, 175, 566, 2270
BstV1I GCAGC 6 cut(s) 51, 1585, 1624, 2111, 2249, 2500
BstX2I RGATCY 1 cut(s) 1165
BstYI RGATCY 1 cut(s) 1165
BstZ17I GTATAC 1 cut(s) 456
BstZI CGGCCG 1 cut(s) 1790
Bsu15I ATCGAT 1 cut(s) 75
Bsu36I CCTNAGG 1 cut(s) 2113
BsuI GTATCC 1 cut(s) 381
BsuTUI ATCGAT 1 cut(s) 75
BtgI CCRYGG 1 cut(s) 1721
BtsCI GGATG 7 cut(s) 423, 448, 858, 1167, 1382, 1526, 1924
BtsI GCAGTG 3 cut(s) 1275, 2220, 2394
BtsIMutI CAGTG 3 cut(s) 1275, 2220, 2394
BveI ACCTGC 1 cut(s) 2147
Cac8I GCNNGC 7 cut(s) 559, 752, 1012, 1313, 1578, 2075, 2509
CfoI GCGC 6 cut(s) 214, 568, 673, 1587, 2073, 2129
Cfr10I RCCGGY 1 cut(s) 65
Cfr13I GGNCC 6 cut(s) 892, 1688, 1799, 2109, 2199, 2272
Cfr9I CCCGGG 1 cut(s) 1761
ClaI ATCGAT 1 cut(s) 75
CseI GACGC 3 cut(s) 7, 2107, 2308
CsiI ACCWGGT 1 cut(s) 1642
Csp6I GTAC 3 cut(s) 1030, 1883, 2338
CspCI CAANNNNNGTGG 4 cut(s) 2019, 2054, 2365, 2400
CviQI GTAC 3 cut(s) 1030, 1883, 2338
DdeI CTNAG 3 cut(s) 1869, 2113, 2152
DinI GGCGCC 1 cut(s) 213
DpnI GATC 7 cut(s) 78, 1097, 1149, 1167, 1179, 1206, 1911
DpnII GATC 7 cut(s) 76, 1095, 1147, 1165, 1177, 1204, 1909
DraIII CACNNNGTG 3 cut(s) 619, 775, 2437
EaeI YGGCCR 2 cut(s) 1790, 1844
EagI CGGCCG 1 cut(s) 1790
Eam1104I CTCTTC 4 cut(s) 731, 839, 1508, 1544
EarI CTCTTC 4 cut(s) 731, 839, 1508, 1544
Ecl136II GAGCTC 1 cut(s) 695
EclXI CGGCCG 1 cut(s) 1790
Eco130I CCWWGG 2 cut(s) 1528, 1803
Eco147I AGGCCT 1 cut(s) 544
Eco24I GRGCYC 2 cut(s) 697, 1598
Eco31I GGTCTC 1 cut(s) 2165
Eco47I GGWCC 5 cut(s) 1688, 1799, 2109, 2199, 2272
Eco52I CGGCCG 1 cut(s) 1790
Eco53kI GAGCTC 1 cut(s) 695
Eco57I CTGAAG 4 cut(s) 1359, 2311, 2501, 2515
Eco81I CCTNAGG 1 cut(s) 2113
Eco88I CYCGRG 4 cut(s) 247, 323, 1628, 1761
EcoICRI GAGCTC 1 cut(s) 695
EcoO109I RGGNCCY 2 cut(s) 892, 1799
EcoRI GAATTC 1 cut(s) 2516
EcoRII CCWGG 4 cut(s) 87, 1506, 1642, 1969
EcoT14I CCWWGG 2 cut(s) 1528, 1803
EcoT22I ATGCAT 2 cut(s) 1350, 1582
EcoT38I GRGCYC 2 cut(s) 697, 1598
EgeI GGCGCC 1 cut(s) 213
EheI GGCGCC 1 cut(s) 213
ErhI CCWWGG 2 cut(s) 1528, 1803
FalI AAGNNNNNCTT 2 cut(s) 1849, 1881
FaqI GGGAC 3 cut(s) 1743, 1785, 1952
FauI CCCGC 2 cut(s) 674, 1304
FbaI TGATCA 3 cut(s) 1147, 1204, 1909
FblI GTMKAC 2 cut(s) 455, 2322
FokI GGATG 7 cut(s) 430, 455, 865, 1174, 1389, 1533, 1911
FriOI GRGCYC 2 cut(s) 697, 1598
FspBI CTAG 9 cut(s) 528, 1020, 1371, 1701, 1796, 1964, 2285, 2442, 2607
FspI TGCGCA 1 cut(s) 2072
GlaI GCGC 6 cut(s) 213, 567, 672, 1586, 2072, 2128
GsuI CTGGAG 2 cut(s) 71, 2513
HaeII RGCGCY 2 cut(s) 215, 1588
HapII CCGG 5 cut(s) 66, 440, 755, 914, 1762
HgaI GACGC 3 cut(s) 7, 2107, 2308
HhaI GCGC 6 cut(s) 214, 568, 673, 1587, 2073, 2129
Hin1I GRCGYC 3 cut(s) 18, 212, 2118
Hin6I GCGC 6 cut(s) 212, 566, 671, 1585, 2071, 2127
HinP1I GCGC 6 cut(s) 212, 566, 671, 1585, 2071, 2127
HincII GTYRAC 1 cut(s) 424
HindII GTYRAC 1 cut(s) 424
HindIII AAGCTT 3 cut(s) 299, 1101, 1139
HpaII CCGG 5 cut(s) 66, 440, 755, 914, 1762
HphI GGTGA 9 cut(s) 605, 638, 775, 1199, 1471, 1626, 1895, 2287, 2326
Hpy166II GTNNAC 9 cut(s) 22, 52, 424, 456, 561, 2060, 2290, 2323, 2431
Hpy188I TCNGA 8 cut(s) 1095, 1126, 1152, 1717, 2199, 2459, 2534, 2552
Hpy8I GTNNAC 9 cut(s) 22, 52, 424, 456, 561, 2060, 2290, 2323, 2431
Hpy99I CGWCG 1 cut(s) 101
HpyAV CCTTC 6 cut(s) 628, 1017, 1109, 1875, 2305, 2401
HpyCH4III ACNGT 7 cut(s) 11, 393, 1038, 1668, 2057, 2281, 2501
HpyCH4IV ACGT 3 cut(s) 942, 1245, 2595
HpyF3I CTNAG 3 cut(s) 1869, 2113, 2152
HpySE526I ACGT 3 cut(s) 942, 1245, 2595
Hsp92I GRCGYC 3 cut(s) 18, 212, 2118
HspAI GCGC 6 cut(s) 212, 566, 671, 1585, 2071, 2127
KasI GGCGCC 1 cut(s) 211
Ksp22I TGATCA 3 cut(s) 1147, 1204, 1909
Kzo9I GATC 7 cut(s) 76, 1095, 1147, 1165, 1177, 1204, 1909
LguI GCTCTTC 1 cut(s) 1544
LmnI GCTCC 2 cut(s) 949, 1592
Lsp1109I GCAGC 6 cut(s) 51, 1585, 1624, 2111, 2249, 2500
LweI GCATC 5 cut(s) 853, 1367, 1560, 1948, 2416
MabI ACCWGGT 1 cut(s) 1642
MaeI CTAG 9 cut(s) 528, 1020, 1371, 1701, 1796, 1964, 2285, 2442, 2607
MaeII ACGT 3 cut(s) 942, 1245, 2595
MaeIII GTNAC 7 cut(s) 176, 763, 1078, 1170, 1241, 1393, 1632
MalI GATC 7 cut(s) 78, 1097, 1149, 1167, 1179, 1206, 1911
MboI GATC 7 cut(s) 76, 1095, 1147, 1165, 1177, 1204, 1909
MboII GAAGA 9 cut(s) 296, 359, 748, 856, 1237, 1495, 1561, 2092, 2494
MflI RGATCY 1 cut(s) 1165
MhlI GDGCHC 5 cut(s) 54, 563, 697, 1598, 2539
Mly113I GGCGCC 1 cut(s) 212
MlyI GAGTC 6 cut(s) 100, 760, 1640, 1751, 1817, 1946
MmeI TCCRAC 1 cut(s) 789
Mph1103I ATGCAT 2 cut(s) 1350, 1582
MroXI GAANNNNTTC 1 cut(s) 1050
MseI TTAA 4 cut(s) 351, 723, 981, 1109
MslI CAYNNNNRTG 2 cut(s) 155, 1353
MspA1I CMGCKG 2 cut(s) 2065, 2491
MspI CCGG 5 cut(s) 66, 440, 755, 914, 1762
MspR9I CCNGG 6 cut(s) 89, 1508, 1644, 1762, 1763, 1971
MvaI CCWGG 4 cut(s) 89, 1508, 1644, 1971
MvnI CGCG 4 cut(s) 123, 175, 566, 2270
NarI GGCGCC 1 cut(s) 212
NciI CCSGG 2 cut(s) 1762, 1763
NdeII GATC 7 cut(s) 76, 1095, 1147, 1165, 1177, 1204, 1909
NmeAIII GCCGAG 2 cut(s) 214, 1768
NmuCI GTSAC 3 cut(s) 763, 1241, 1632
NsbI TGCGCA 1 cut(s) 2072
NsiI ATGCAT 2 cut(s) 1350, 1582
NspI RCATGY 2 cut(s) 1580, 2077
NspV TTCGAA 3 cut(s) 1547, 2211, 2514
PaeI GCATGC 2 cut(s) 1580, 2077
PaeR7I CTCGAG 1 cut(s) 247
PasI CCCWGGG 1 cut(s) 1970
PceI AGGCCT 1 cut(s) 544
PciSI GCTCTTC 1 cut(s) 1544
PcsI WCGNNNNNNNCGW 2 cut(s) 186, 2463
PdmI GAANNNNTTC 1 cut(s) 1050
PfeI GAWTC 4 cut(s) 364, 1051, 1272, 1544
PflMI CCANNNNNTGG 3 cut(s) 726, 1643, 2136
PleI GAGTC 6 cut(s) 100, 760, 1639, 1750, 1816, 1946
PluTI GGCGCC 1 cut(s) 215
PpsI GAGTC 6 cut(s) 100, 760, 1639, 1750, 1816, 1946
PpuMI RGGWCCY 1 cut(s) 1799
PsiI TTATAA 3 cut(s) 876, 1424, 2574
Psp124BI GAGCTC 1 cut(s) 697
Psp1406I AACGTT 1 cut(s) 2595
Psp5II RGGWCCY 1 cut(s) 1799
Psp6I CCWGG 4 cut(s) 87, 1506, 1642, 1969
PspGI CCWGG 4 cut(s) 87, 1506, 1642, 1969
PspPI GGNCC 6 cut(s) 892, 1688, 1799, 2109, 2199, 2272
PspPPI RGGWCCY 1 cut(s) 1799
PsuI RGATCY 1 cut(s) 1165
PvuII CAGCTG 1 cut(s) 2491
RsaI GTAC 3 cut(s) 1031, 1884, 2339
RsaNI GTAC 3 cut(s) 1030, 1883, 2338
RseI CAYNNNNRTG 2 cut(s) 155, 1353
SacI GAGCTC 1 cut(s) 697
SapI GCTCTTC 1 cut(s) 1544
SaqAI TTAA 4 cut(s) 351, 723, 981, 1109
Sau3AI GATC 7 cut(s) 76, 1095, 1147, 1165, 1177, 1204, 1909
Sau96I GGNCC 6 cut(s) 892, 1688, 1799, 2109, 2199, 2272
SchI GAGTC 6 cut(s) 100, 760, 1640, 1751, 1817, 1946
ScrFI CCNGG 6 cut(s) 89, 1508, 1644, 1762, 1763, 1971
SduI GDGCHC 5 cut(s) 54, 563, 697, 1598, 2539
SexAI ACCWGGT 1 cut(s) 1642
SfaNI GCATC 5 cut(s) 853, 1367, 1560, 1948, 2416
SfcI CTRYAG 1 cut(s) 459
SfoI GGCGCC 1 cut(s) 213
Sfr274I CTCGAG 1 cut(s) 247
SfuI TTCGAA 3 cut(s) 1547, 2211, 2514
SinI GGWCC 5 cut(s) 1688, 1799, 2109, 2199, 2272
SlaI CTCGAG 1 cut(s) 247
SmaI CCCGGG 1 cut(s) 1763
SmiMI CAYNNNNRTG 2 cut(s) 155, 1353
SmlI CTYRAG 4 cut(s) 247, 887, 1591, 1998
SmoI CTYRAG 4 cut(s) 247, 887, 1591, 1998
SpeI ACTAGT 2 cut(s) 527, 1963
SphI GCATGC 2 cut(s) 1580, 2077
SseBI AGGCCT 1 cut(s) 544
SspDI GGCGCC 1 cut(s) 211
SspMI CTAG 9 cut(s) 528, 1020, 1371, 1701, 1796, 1964, 2285, 2442, 2607
SstI GAGCTC 1 cut(s) 697
StuI AGGCCT 1 cut(s) 544
StyD4I CCNGG 6 cut(s) 87, 1506, 1642, 1760, 1761, 1969
StyI CCWWGG 2 cut(s) 1528, 1803
TaaI ACNGT 7 cut(s) 11, 393, 1038, 1668, 2057, 2281, 2501
TaiI ACGT 3 cut(s) 945, 1248, 2598
TatI WGTACW 1 cut(s) 2337
TauI GCSGC 7 cut(s) 45, 123, 217, 1782, 1795, 1863, 1979
TfiI GAWTC 4 cut(s) 364, 1051, 1272, 1544
Tru1I TTAA 4 cut(s) 351, 723, 981, 1109
Tru9I TTAA 4 cut(s) 351, 723, 981, 1109
TscAI CASTG 3 cut(s) 1282, 2227, 2401
TseFI GTSAC 3 cut(s) 763, 1241, 1632
TseI GCWGC 6 cut(s) 39, 1573, 1612, 2124, 2237, 2488
Tsp45I GTSAC 3 cut(s) 763, 1241, 1632
TspMI CCCGGG 1 cut(s) 1761
TspRI CASTG 3 cut(s) 1282, 2227, 2401
Van91I CCANNNNNTGG 3 cut(s) 726, 1643, 2136
VneI GTGCAC 2 cut(s) 50, 559
VpaK11BI GGWCC 5 cut(s) 1688, 1799, 2109, 2199, 2272
XapI RAATTY 4 cut(s) 280, 1062, 2214, 2516
XbaI TCTAGA 1 cut(s) 2606
XceI RCATGY 2 cut(s) 1580, 2077
XcmI CCANNNNNNNNNTGG 1 cut(s) 2030
XhoI CTCGAG 1 cut(s) 247
XmaI CCCGGG 1 cut(s) 1761
XmiI GTMKAC 2 cut(s) 455, 2322
XmnI GAANNNNTTC 1 cut(s) 1050
XspI CTAG 9 cut(s) 528, 1020, 1371, 1701, 1796, 1964, 2285, 2442, 2607
Zsp2I ATGCAT 2 cut(s) 1350, 1582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.