Pentatricopeptide repeat-containing protein At1g13040
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G13040 AT1G13040 |
| fragaria_vesca | FvH4_4g25420 |
| malus_domestica | MD13G1103100.v1.1 MD16G1103300.v1.1 |
| prunus_persica | Prupe.1G242700_v2.0.a1 |
| pyrus_communis | pycom13g09010 pycom16g08810 |
| rosa_chinensis | RchiOBHm_Chr4g0432731 |
| rosa_laevigata | RLG00000006817 |
| rosa_multiflora | Rmu_co8522421.1_g000001 |
| rosa_roxburghii | Rroxscaffold_5G00374190 |
| rosa_rugosa | Rorug04G0262000 |
| rosa_samantha | Rh4AG316500 Rh4BG324500 Rh4CG339500 Rh4DG319800 |
| rosa_wichuraiana | Rw4G027530 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 931, 1479 |
| AccB1I | GGYRCC | 2 cut(s) | 266, 802 |
| AccI | GTMKAC | 1 cut(s) | 510 |
| AccII | CGCG | 3 cut(s) | 178, 230, 621 |
| AciI | CCGC | 7 cut(s) | 80, 98, 176, 270, 619, 1333, 1366 |
| AclWI | GGATC | 1 cut(s) | 1228 |
| AcsI | RAATTY | 2 cut(s) | 335, 1117 |
| AcuI | CTGAAG | 1 cut(s) | 1414 |
| AcyI | GRCGYC | 2 cut(s) | 73, 267 |
| AdeI | CACNNNGTG | 1 cut(s) | 830 |
| AgsI | TTSAA | 8 cut(s) | 419, 707, 839, 1110, 1307, 1384, 1457, 1588 |
| AjnI | CCWGG | 2 cut(s) | 4, 142 |
| AluBI | AGCT | 4 cut(s) | 356, 540, 1158, 1196 |
| AluI | AGCT | 4 cut(s) | 356, 540, 1158, 1196 |
| Alw21I | GWGCWC | 2 cut(s) | 109, 618 |
| Alw26I | GTCTC | 2 cut(s) | 72, 1477 |
| Alw44I | GTGCAC | 2 cut(s) | 105, 614 |
| AlwI | GGATC | 1 cut(s) | 1228 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1568 |
| Ama87I | CYCGRG | 1 cut(s) | 378 |
| AoxI | GGCC | 4 cut(s) | 122, 400, 597, 947 |
| ApaLI | GTGCAC | 2 cut(s) | 105, 614 |
| ApoI | RAATTY | 2 cut(s) | 335, 1117 |
| AseI | ATTAAT | 1 cut(s) | 1573 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1105 |
| AspLEI | GCGC | 5 cut(s) | 35, 269, 623, 728, 770 |
| AspS9I | GGNCC | 3 cut(s) | 16, 400, 947 |
| AsuHPI | GGTGA | 4 cut(s) | 693, 830, 1254, 1322 |
| AvaI | CYCGRG | 1 cut(s) | 378 |
| AvaII | GGWCC | 1 cut(s) | 16 |
| BaeGI | GKGCMC | 2 cut(s) | 109, 618 |
| BanI | GGYRCC | 2 cut(s) | 266, 802 |
| BanII | GRGCYC | 1 cut(s) | 752 |
| Bbv12I | GWGCWC | 2 cut(s) | 109, 618 |
| BccI | CCATC | 6 cut(s) | 467, 519, 902, 995, 1211, 1520 |
| BciT130I | CCWGG | 2 cut(s) | 6, 144 |
| BciVI | GTATCC | 1 cut(s) | 436 |
| BclI | TGATCA | 2 cut(s) | 1202, 1259 |
| BcoDI | GTCTC | 2 cut(s) | 72, 1477 |
| BfaI | CTAG | 2 cut(s) | 1075, 1426 |
| BfmI | CTRYAG | 1 cut(s) | 514 |
| BfoI | RGCGCY | 1 cut(s) | 270 |
| BfuI | GTATCC | 1 cut(s) | 436 |
| BisI | GCNGC | 3 cut(s) | 98, 176, 270 |
| BlsI | GCNGC | 3 cut(s) | 99, 177, 271 |
| Bme1390I | CCNGG | 2 cut(s) | 6, 144 |
| Bme18I | GGWCC | 1 cut(s) | 16 |
| BmeT110I | CYCGRG | 1 cut(s) | 378 |
| BmgT120I | GGNCC | 3 cut(s) | 16, 400, 947 |
| BmiI | GGNNCC | 4 cut(s) | 96, 268, 804, 1006 |
| BmrFI | CCNGG | 2 cut(s) | 6, 144 |
| BmsI | GCATC | 2 cut(s) | 908, 1422 |
| BpmI | CTGGAG | 2 cut(s) | 126, 287 |
| BpuEI | CTTGAG | 1 cut(s) | 927 |
| Bsa29I | ATCGAT | 2 cut(s) | 130, 523 |
| BsaBI | GATNNNNATC | 1 cut(s) | 58 |
| BsaHI | GRCGYC | 2 cut(s) | 73, 267 |
| BsaWI | WCCGGW | 2 cut(s) | 91, 968 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 202, 232 |
| Bse118I | RCCGGY | 1 cut(s) | 120 |
| Bse3DI | GCAATG | 1 cut(s) | 1294 |
| Bse8I | GATNNNNATC | 1 cut(s) | 58 |
| BseBI | CCWGG | 2 cut(s) | 6, 144 |
| BseCI | ATCGAT | 2 cut(s) | 130, 523 |
| BseGI | GGATG | 6 cut(s) | 478, 503, 913, 1222, 1437, 1523 |
| BseJI | GATNNNNATC | 1 cut(s) | 58 |
| BseMI | GCAATG | 1 cut(s) | 1294 |
| BseMII | CTCAG | 1 cut(s) | 177 |
| BseRI | GAGGAG | 1 cut(s) | 882 |
| BseSI | GKGCMC | 2 cut(s) | 109, 618 |
| Bsh1236I | CGCG | 3 cut(s) | 178, 230, 621 |
| BshFI | GGCC | 4 cut(s) | 124, 402, 599, 949 |
| BshNI | GGYRCC | 2 cut(s) | 266, 802 |
| BshVI | ATCGAT | 2 cut(s) | 130, 523 |
| BsiHKAI | GWGCWC | 2 cut(s) | 109, 618 |
| BsiHKCI | CYCGRG | 1 cut(s) | 378 |
| BsiSI | CCGG | 5 cut(s) | 92, 121, 495, 810, 969 |
| BslFI | GGGAC | 1 cut(s) | 378 |
| BsmAI | GTCTC | 2 cut(s) | 72, 1477 |
| BsmFI | GGGAC | 1 cut(s) | 378 |
| BsmI | GAATGC | 1 cut(s) | 40 |
| BsnI | GGCC | 4 cut(s) | 124, 402, 599, 949 |
| BsoBI | CYCGRG | 1 cut(s) | 378 |
| Bsp1286I | GDGCHC | 3 cut(s) | 109, 618, 752 |
| Bsp143I | GATC | 6 cut(s) | 25, 131, 1202, 1220, 1232, 1259 |
| BspACI | CCGC | 7 cut(s) | 80, 98, 176, 270, 619, 1333, 1366 |
| BspANI | GGCC | 4 cut(s) | 124, 402, 599, 949 |
| BspCNI | CTCAG | 1 cut(s) | 176 |
| BspDI | ATCGAT | 2 cut(s) | 130, 523 |
| BspFNI | CGCG | 3 cut(s) | 178, 230, 621 |
| BspLI | GGNNCC | 4 cut(s) | 96, 268, 804, 1006 |
| BspPI | GGATC | 1 cut(s) | 1228 |
| BspT107I | GGYRCC | 2 cut(s) | 266, 802 |
| BsrDI | GCAATG | 1 cut(s) | 1294 |
| BsrFI | RCCGGY | 1 cut(s) | 120 |
| BssAI | RCCGGY | 1 cut(s) | 120 |
| BssMI | GATC | 6 cut(s) | 25, 131, 1202, 1220, 1232, 1259 |
| BssNAI | GTATAC | 1 cut(s) | 511 |
| BssNI | GRCGYC | 2 cut(s) | 73, 267 |
| Bst1107I | GTATAC | 1 cut(s) | 511 |
| Bst2UI | CCWGG | 2 cut(s) | 6, 144 |
| Bst4CI | ACNGT | 3 cut(s) | 66, 448, 1093 |
| Bst6I | CTCTTC | 2 cut(s) | 786, 894 |
| BstACI | GRCGYC | 2 cut(s) | 73, 267 |
| BstC8I | GCNNGC | 4 cut(s) | 614, 772, 807, 1368 |
| BstDEI | CTNAG | 1 cut(s) | 163 |
| BstF5I | GGATG | 6 cut(s) | 478, 503, 913, 1222, 1437, 1523 |
| BstFNI | CGCG | 3 cut(s) | 178, 230, 621 |
| BstH2I | RGCGCY | 1 cut(s) | 270 |
| BstHHI | GCGC | 5 cut(s) | 35, 269, 623, 728, 770 |
| BstKTI | GATC | 6 cut(s) | 28, 134, 1205, 1223, 1235, 1262 |
| BstMAI | GTCTC | 2 cut(s) | 72, 1477 |
| BstMBI | GATC | 6 cut(s) | 25, 131, 1202, 1220, 1232, 1259 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 79, 184, 221, 618, 1372 |
| BstNI | CCWGG | 2 cut(s) | 6, 144 |
| BstSCI | CCNGG | 2 cut(s) | 4, 142 |
| BstSFI | CTRYAG | 1 cut(s) | 514 |
| BstSLI | GKGCMC | 2 cut(s) | 109, 618 |
| BstUI | CGCG | 3 cut(s) | 178, 230, 621 |
| BstX2I | RGATCY | 1 cut(s) | 1220 |
| BstYI | RGATCY | 1 cut(s) | 1220 |
| BstZ17I | GTATAC | 1 cut(s) | 511 |
| Bsu15I | ATCGAT | 2 cut(s) | 130, 523 |
| BsuI | GTATCC | 1 cut(s) | 436 |
| BsuRI | GGCC | 4 cut(s) | 124, 402, 599, 949 |
| BsuTUI | ATCGAT | 2 cut(s) | 130, 523 |
| BtsCI | GGATG | 6 cut(s) | 478, 503, 913, 1222, 1437, 1523 |
| BtsIMutI | CAGTG | 1 cut(s) | 1566 |
| Cac8I | GCNNGC | 4 cut(s) | 614, 772, 807, 1368 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1568 |
| CfoI | GCGC | 5 cut(s) | 35, 269, 623, 728, 770 |
| Cfr10I | RCCGGY | 1 cut(s) | 120 |
| Cfr13I | GGNCC | 3 cut(s) | 16, 400, 947 |
| ClaI | ATCGAT | 2 cut(s) | 130, 523 |
| CseI | GACGC | 1 cut(s) | 62 |
| CviAII | CATG | 6 cut(s) | 101, 368, 860, 998, 1400, 1600 |
| DdeI | CTNAG | 1 cut(s) | 163 |
| DinI | GGCGCC | 1 cut(s) | 268 |
| DpnI | GATC | 6 cut(s) | 27, 133, 1204, 1222, 1234, 1261 |
| DpnII | GATC | 6 cut(s) | 25, 131, 1202, 1220, 1232, 1259 |
| DraIII | CACNNNGTG | 1 cut(s) | 830 |
| Eam1104I | CTCTTC | 2 cut(s) | 786, 894 |
| EarI | CTCTTC | 2 cut(s) | 786, 894 |
| Eco147I | AGGCCT | 1 cut(s) | 599 |
| Eco24I | GRGCYC | 1 cut(s) | 752 |
| Eco47I | GGWCC | 1 cut(s) | 16 |
| Eco57I | CTGAAG | 1 cut(s) | 1414 |
| Eco88I | CYCGRG | 1 cut(s) | 378 |
| EcoO109I | RGGNCCY | 2 cut(s) | 16, 947 |
| EcoRII | CCWGG | 2 cut(s) | 4, 142 |
| EcoT22I | ATGCAT | 2 cut(s) | 42, 1405 |
| EcoT38I | GRGCYC | 1 cut(s) | 752 |
| EgeI | GGCGCC | 1 cut(s) | 268 |
| EheI | GGCGCC | 1 cut(s) | 268 |
| FaeI | CATG | 6 cut(s) | 104, 371, 863, 1001, 1403, 1603 |
| FaqI | GGGAC | 1 cut(s) | 378 |
| FatI | CATG | 6 cut(s) | 100, 367, 859, 997, 1399, 1599 |
| FauI | CCCGC | 1 cut(s) | 1359 |
| FbaI | TGATCA | 2 cut(s) | 1202, 1259 |
| FblI | GTMKAC | 1 cut(s) | 510 |
| Fnu4HI | GCNGC | 3 cut(s) | 98, 176, 270 |
| FokI | GGATG | 6 cut(s) | 485, 510, 920, 1229, 1444, 1530 |
| FriOI | GRGCYC | 1 cut(s) | 752 |
| Fsp4HI | GCNGC | 3 cut(s) | 98, 176, 270 |
| FspBI | CTAG | 2 cut(s) | 1075, 1426 |
| GlaI | GCGC | 5 cut(s) | 34, 268, 622, 727, 769 |
| GluI | GCNGC | 3 cut(s) | 98, 176, 270 |
| GsuI | CTGGAG | 2 cut(s) | 126, 287 |
| HaeII | RGCGCY | 1 cut(s) | 270 |
| HaeIII | GGCC | 4 cut(s) | 124, 402, 599, 949 |
| HapII | CCGG | 5 cut(s) | 92, 121, 495, 810, 969 |
| HgaI | GACGC | 1 cut(s) | 62 |
| HhaI | GCGC | 5 cut(s) | 35, 269, 623, 728, 770 |
| Hin1I | GRCGYC | 2 cut(s) | 73, 267 |
| Hin1II | CATG | 6 cut(s) | 104, 371, 863, 1001, 1403, 1603 |
| Hin6I | GCGC | 5 cut(s) | 33, 267, 621, 726, 768 |
| HinP1I | GCGC | 5 cut(s) | 33, 267, 621, 726, 768 |
| HindIII | AAGCTT | 3 cut(s) | 354, 1156, 1194 |
| HinfI | GANTC | 4 cut(s) | 161, 419, 821, 1327 |
| HpaII | CCGG | 5 cut(s) | 92, 121, 495, 810, 969 |
| HphI | GGTGA | 4 cut(s) | 693, 830, 1254, 1322 |
| Hpy166II | GTNNAC | 4 cut(s) | 77, 107, 511, 616 |
| Hpy188I | TCNGA | 4 cut(s) | 53, 1150, 1181, 1207 |
| Hpy188III | TCNNGA | 8 cut(s) | 304, 332, 363, 456, 1200, 1384, 1440, 1545 |
| Hpy8I | GTNNAC | 4 cut(s) | 77, 107, 511, 616 |
| Hpy99I | CGWCG | 1 cut(s) | 156 |
| HpyAV | CCTTC | 6 cut(s) | 476, 683, 1072, 1164, 1316, 1526 |
| HpyCH4III | ACNGT | 3 cut(s) | 66, 448, 1093 |
| HpyCH4IV | ACGT | 1 cut(s) | 1300 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 79, 184, 221, 618, 1372 |
| HpyF3I | CTNAG | 1 cut(s) | 163 |
| HpySE526I | ACGT | 1 cut(s) | 1300 |
| Hsp92I | GRCGYC | 2 cut(s) | 73, 267 |
| Hsp92II | CATG | 6 cut(s) | 104, 371, 863, 1001, 1403, 1603 |
| HspAI | GCGC | 5 cut(s) | 33, 267, 621, 726, 768 |
| KasI | GGCGCC | 1 cut(s) | 266 |
| Ksp22I | TGATCA | 2 cut(s) | 1202, 1259 |
| Kzo9I | GATC | 6 cut(s) | 25, 131, 1202, 1220, 1232, 1259 |
| LmnI | GCTCC | 2 cut(s) | 94, 1004 |
| LweI | GCATC | 2 cut(s) | 908, 1422 |
| MaeI | CTAG | 2 cut(s) | 1075, 1426 |
| MaeII | ACGT | 1 cut(s) | 1300 |
| MaeIII | GTNAC | 6 cut(s) | 231, 818, 1133, 1225, 1388, 1448 |
| MalI | GATC | 6 cut(s) | 27, 133, 1204, 1222, 1234, 1261 |
| MboI | GATC | 6 cut(s) | 25, 131, 1202, 1220, 1232, 1259 |
| MboII | GAAGA | 5 cut(s) | 351, 414, 803, 911, 1292 |
| MflI | RGATCY | 1 cut(s) | 1220 |
| MhlI | GDGCHC | 3 cut(s) | 109, 618, 752 |
| Mly113I | GGCGCC | 1 cut(s) | 267 |
| MlyI | GAGTC | 2 cut(s) | 155, 815 |
| MmeI | TCCRAC | 1 cut(s) | 844 |
| Mph1103I | ATGCAT | 2 cut(s) | 42, 1405 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1105 |
| MseI | TTAA | 5 cut(s) | 406, 778, 1036, 1164, 1573 |
| MslI | CAYNNNNRTG | 2 cut(s) | 210, 1408 |
| MspA1I | CMGCKG | 1 cut(s) | 1335 |
| MspI | CCGG | 5 cut(s) | 92, 121, 495, 810, 969 |
| MspR9I | CCNGG | 2 cut(s) | 6, 144 |
| Mva1269I | GAATGC | 1 cut(s) | 40 |
| MvaI | CCWGG | 2 cut(s) | 6, 144 |
| MvnI | CGCG | 3 cut(s) | 178, 230, 621 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 79, 184, 221, 618, 1372 |
| NarI | GGCGCC | 1 cut(s) | 267 |
| NdeII | GATC | 6 cut(s) | 25, 131, 1202, 1220, 1232, 1259 |
| NlaIII | CATG | 6 cut(s) | 104, 371, 863, 1001, 1403, 1603 |
| NlaIV | GGNNCC | 4 cut(s) | 96, 268, 804, 1006 |
| NmeAIII | GCCGAG | 2 cut(s) | 49, 269 |
| NmuCI | GTSAC | 2 cut(s) | 818, 1388 |
| NsiI | ATGCAT | 2 cut(s) | 42, 1405 |
| PceI | AGGCCT | 1 cut(s) | 599 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 241 |
| PctI | GAATGC | 1 cut(s) | 40 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1105 |
| PfeI | GAWTC | 2 cut(s) | 419, 1327 |
| PflFI | GACNNNGTC | 1 cut(s) | 164 |
| PkrI | GCNGC | 3 cut(s) | 99, 177, 271 |
| PleI | GAGTC | 2 cut(s) | 155, 815 |
| PluTI | GGCGCC | 1 cut(s) | 270 |
| PpsI | GAGTC | 2 cut(s) | 155, 815 |
| PpuMI | RGGWCCY | 1 cut(s) | 16 |
| PshBI | ATTAAT | 1 cut(s) | 1573 |
| PsiI | TTATAA | 2 cut(s) | 931, 1479 |
| Psp5II | RGGWCCY | 1 cut(s) | 16 |
| Psp6I | CCWGG | 2 cut(s) | 4, 142 |
| PspGI | CCWGG | 2 cut(s) | 4, 142 |
| PspN4I | GGNNCC | 4 cut(s) | 96, 268, 804, 1006 |
| PspPI | GGNCC | 3 cut(s) | 16, 400, 947 |
| PspPPI | RGGWCCY | 1 cut(s) | 16 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1568 |
| PsuI | RGATCY | 1 cut(s) | 1220 |
| PsyI | GACNNNGTC | 1 cut(s) | 164 |
| RseI | CAYNNNNRTG | 2 cut(s) | 210, 1408 |
| SaqAI | TTAA | 5 cut(s) | 406, 778, 1036, 1164, 1573 |
| SatI | GCNGC | 3 cut(s) | 98, 176, 270 |
| Sau3AI | GATC | 6 cut(s) | 25, 131, 1202, 1220, 1232, 1259 |
| Sau96I | GGNCC | 3 cut(s) | 16, 400, 947 |
| SchI | GAGTC | 2 cut(s) | 155, 815 |
| ScrFI | CCNGG | 2 cut(s) | 6, 144 |
| SduI | GDGCHC | 3 cut(s) | 109, 618, 752 |
| SfaNI | GCATC | 2 cut(s) | 908, 1422 |
| SfcI | CTRYAG | 1 cut(s) | 514 |
| SfoI | GGCGCC | 1 cut(s) | 268 |
| SinI | GGWCC | 1 cut(s) | 16 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 210, 1408 |
| SmlI | CTYRAG | 1 cut(s) | 942 |
| SmoI | CTYRAG | 1 cut(s) | 942 |
| SseBI | AGGCCT | 1 cut(s) | 599 |
| SsiI | CCGC | 7 cut(s) | 80, 98, 176, 270, 619, 1333, 1366 |
| SspDI | GGCGCC | 1 cut(s) | 266 |
| SspMI | CTAG | 2 cut(s) | 1075, 1426 |
| StuI | AGGCCT | 1 cut(s) | 599 |
| StyD4I | CCNGG | 2 cut(s) | 4, 142 |
| TaaI | ACNGT | 3 cut(s) | 66, 448, 1093 |
| TaiI | ACGT | 1 cut(s) | 1303 |
| TaqI | TCGA | 4 cut(s) | 130, 151, 523, 916 |
| TauI | GCSGC | 3 cut(s) | 100, 178, 272 |
| TfiI | GAWTC | 2 cut(s) | 419, 1327 |
| Tru1I | TTAA | 5 cut(s) | 406, 778, 1036, 1164, 1573 |
| Tru9I | TTAA | 5 cut(s) | 406, 778, 1036, 1164, 1573 |
| TscAI | CASTG | 1 cut(s) | 1573 |
| TseFI | GTSAC | 2 cut(s) | 818, 1388 |
| Tsp45I | GTSAC | 2 cut(s) | 818, 1388 |
| TspDTI | ATGAA | 6 cut(s) | 194, 702, 804, 848, 900, 1021 |
| TspRI | CASTG | 1 cut(s) | 1573 |
| Tth111I | GACNNNGTC | 1 cut(s) | 164 |
| VneI | GTGCAC | 2 cut(s) | 105, 614 |
| VpaK11BI | GGWCC | 1 cut(s) | 16 |
| VspI | ATTAAT | 1 cut(s) | 1573 |
| XapI | RAATTY | 2 cut(s) | 335, 1117 |
| XmiI | GTMKAC | 1 cut(s) | 510 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1105 |
| XspI | CTAG | 2 cut(s) | 1075, 1426 |
| Zsp2I | ATGCAT | 2 cut(s) | 42, 1405 |