Rmu_co8522421.1_g000001

Pentatricopeptide repeat-containing protein At1g13040

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8522421.1
Physical Location & Seq
Forward (+)
1 .. 1603
1603 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8522421.1_g000001.1.cds

Sequence Viewer

Length: 1603 bp
tctccaggcattgaggtcctccacgatctctgcgctatgcattcccctctctgatatgtatcacagtctcggcgtccaccgcctcatctaccggagccgcatggtgcactatatcaaaaccggcctcatcgatcacgccctccaggtgttcgacgaaatgactcagtcaaattgccgcgtgttcagcatagactacaatcgcttcattggagtgctggtcaagcactcgcgttacgacctcgccgagcattattactacgaaatggcgccgcaaggcttctctctaaccccattcacttactccagatttatttctgggttgtgtaatatcaagaattttaccctcattgagaagcttcttcgggacatggagaggctcgggtgtgtgcctgacatttgggcctttaatatatatttgaatcttctctgccaagaaaataggatacagttggctctggaagtgtttgataggatggttgagaaggggagagagccggatgttgtgtcgtatactatagttatcgatgggttgtgtaaagctggaaagtttgataatgcagttgaggtttggaattgtatgattagtaaagggtttaggcctgatactattgcgtgcaccgcgcttgttgttggtttgtgtggaggtggaaaggttgatttggcttatgaccttgtaattggtgagatgaagggtggagtgaagttcaataatttgatgtataatgcgctgattagtgggttttgtcgggctcgtagaattgacaaggcgcaggcaattaagtggtttatgaagaggaatgggtgccagccggatttggtgactcacaatgtgttgttgaattattgttgtaatgagttcatgttggaggaggcagagaagttgatgaaacaaatggagaagagtgggatggaactcgatgcgtatagttataatgggttgctcaagggcctttgtaaagataatagaccggaaaaggcatatttgttgatgaggaacatgatggagccaaaaggtttgtgtaatgttgtttcatttaatacaatcattacagcattttgcaaggcagggcaaactagaagggcatacaaactgtttgaggaaatgtttcaaaaagaaattttacctgatgtggttacatttaccattctgatagaagctttattaagagaaggtagttcagatatagccaagaagcttcttgatcagatgacagggatggatctgttacctgatcgtatattttacactacaataattgatcacctatgtaagagtgggaagattgcaatggcttttgacgttttcaatgatatgttagagaagggaatcaccgctgatgtggttttgtataatgcactcattagcgggctttgcagggcttcaagagtgactgaagccatgcatttatatgaggaaatgcagactagaggatgctgtcctgatgaggtaactttcaaagtgataattagaggtcttataagagacaagaggctttctgtggcttgtggggtatgggatgagatgatggagaagggctttactctggacagagttctttcccagacactgattaatgctgtccattcaaaagatgttgcatga

Protein Analysis

533

Amino Acids

60.74

Weight (kDa)

7.51

Isoelectric Point (pI)

33.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012815)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13040 AT1G13040
fragaria_vesca FvH4_4g25420
malus_domestica MD13G1103100.v1.1 MD16G1103300.v1.1
prunus_persica Prupe.1G242700_v2.0.a1
pyrus_communis pycom13g09010 pycom16g08810
rosa_chinensis RchiOBHm_Chr4g0432731
rosa_laevigata RLG00000006817
rosa_multiflora Rmu_co8522421.1_g000001
rosa_roxburghii Rroxscaffold_5G00374190
rosa_rugosa Rorug04G0262000
rosa_samantha Rh4AG316500 Rh4BG324500 Rh4CG339500 Rh4DG319800
rosa_wichuraiana Rw4G027530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 931, 1479
AccB1I GGYRCC 2 cut(s) 266, 802
AccI GTMKAC 1 cut(s) 510
AccII CGCG 3 cut(s) 178, 230, 621
AciI CCGC 7 cut(s) 80, 98, 176, 270, 619, 1333, 1366
AclWI GGATC 1 cut(s) 1228
AcsI RAATTY 2 cut(s) 335, 1117
AcuI CTGAAG 1 cut(s) 1414
AcyI GRCGYC 2 cut(s) 73, 267
AdeI CACNNNGTG 1 cut(s) 830
AgsI TTSAA 8 cut(s) 419, 707, 839, 1110, 1307, 1384, 1457, 1588
AjnI CCWGG 2 cut(s) 4, 142
AluBI AGCT 4 cut(s) 356, 540, 1158, 1196
AluI AGCT 4 cut(s) 356, 540, 1158, 1196
Alw21I GWGCWC 2 cut(s) 109, 618
Alw26I GTCTC 2 cut(s) 72, 1477
Alw44I GTGCAC 2 cut(s) 105, 614
AlwI GGATC 1 cut(s) 1228
AlwNI CAGNNNCTG 1 cut(s) 1568
Ama87I CYCGRG 1 cut(s) 378
AoxI GGCC 4 cut(s) 122, 400, 597, 947
ApaLI GTGCAC 2 cut(s) 105, 614
ApoI RAATTY 2 cut(s) 335, 1117
AseI ATTAAT 1 cut(s) 1573
Asp700I GAANNNNTTC 1 cut(s) 1105
AspLEI GCGC 5 cut(s) 35, 269, 623, 728, 770
AspS9I GGNCC 3 cut(s) 16, 400, 947
AsuHPI GGTGA 4 cut(s) 693, 830, 1254, 1322
AvaI CYCGRG 1 cut(s) 378
AvaII GGWCC 1 cut(s) 16
BaeGI GKGCMC 2 cut(s) 109, 618
BanI GGYRCC 2 cut(s) 266, 802
BanII GRGCYC 1 cut(s) 752
Bbv12I GWGCWC 2 cut(s) 109, 618
BccI CCATC 6 cut(s) 467, 519, 902, 995, 1211, 1520
BciT130I CCWGG 2 cut(s) 6, 144
BciVI GTATCC 1 cut(s) 436
BclI TGATCA 2 cut(s) 1202, 1259
BcoDI GTCTC 2 cut(s) 72, 1477
BfaI CTAG 2 cut(s) 1075, 1426
BfmI CTRYAG 1 cut(s) 514
BfoI RGCGCY 1 cut(s) 270
BfuI GTATCC 1 cut(s) 436
BisI GCNGC 3 cut(s) 98, 176, 270
BlsI GCNGC 3 cut(s) 99, 177, 271
Bme1390I CCNGG 2 cut(s) 6, 144
Bme18I GGWCC 1 cut(s) 16
BmeT110I CYCGRG 1 cut(s) 378
BmgT120I GGNCC 3 cut(s) 16, 400, 947
BmiI GGNNCC 4 cut(s) 96, 268, 804, 1006
BmrFI CCNGG 2 cut(s) 6, 144
BmsI GCATC 2 cut(s) 908, 1422
BpmI CTGGAG 2 cut(s) 126, 287
BpuEI CTTGAG 1 cut(s) 927
Bsa29I ATCGAT 2 cut(s) 130, 523
BsaBI GATNNNNATC 1 cut(s) 58
BsaHI GRCGYC 2 cut(s) 73, 267
BsaWI WCCGGW 2 cut(s) 91, 968
BsaXI ACNNNNNCTCC 2 cut(s) 202, 232
Bse118I RCCGGY 1 cut(s) 120
Bse3DI GCAATG 1 cut(s) 1294
Bse8I GATNNNNATC 1 cut(s) 58
BseBI CCWGG 2 cut(s) 6, 144
BseCI ATCGAT 2 cut(s) 130, 523
BseGI GGATG 6 cut(s) 478, 503, 913, 1222, 1437, 1523
BseJI GATNNNNATC 1 cut(s) 58
BseMI GCAATG 1 cut(s) 1294
BseMII CTCAG 1 cut(s) 177
BseRI GAGGAG 1 cut(s) 882
BseSI GKGCMC 2 cut(s) 109, 618
Bsh1236I CGCG 3 cut(s) 178, 230, 621
BshFI GGCC 4 cut(s) 124, 402, 599, 949
BshNI GGYRCC 2 cut(s) 266, 802
BshVI ATCGAT 2 cut(s) 130, 523
BsiHKAI GWGCWC 2 cut(s) 109, 618
BsiHKCI CYCGRG 1 cut(s) 378
BsiSI CCGG 5 cut(s) 92, 121, 495, 810, 969
BslFI GGGAC 1 cut(s) 378
BsmAI GTCTC 2 cut(s) 72, 1477
BsmFI GGGAC 1 cut(s) 378
BsmI GAATGC 1 cut(s) 40
BsnI GGCC 4 cut(s) 124, 402, 599, 949
BsoBI CYCGRG 1 cut(s) 378
Bsp1286I GDGCHC 3 cut(s) 109, 618, 752
Bsp143I GATC 6 cut(s) 25, 131, 1202, 1220, 1232, 1259
BspACI CCGC 7 cut(s) 80, 98, 176, 270, 619, 1333, 1366
BspANI GGCC 4 cut(s) 124, 402, 599, 949
BspCNI CTCAG 1 cut(s) 176
BspDI ATCGAT 2 cut(s) 130, 523
BspFNI CGCG 3 cut(s) 178, 230, 621
BspLI GGNNCC 4 cut(s) 96, 268, 804, 1006
BspPI GGATC 1 cut(s) 1228
BspT107I GGYRCC 2 cut(s) 266, 802
BsrDI GCAATG 1 cut(s) 1294
BsrFI RCCGGY 1 cut(s) 120
BssAI RCCGGY 1 cut(s) 120
BssMI GATC 6 cut(s) 25, 131, 1202, 1220, 1232, 1259
BssNAI GTATAC 1 cut(s) 511
BssNI GRCGYC 2 cut(s) 73, 267
Bst1107I GTATAC 1 cut(s) 511
Bst2UI CCWGG 2 cut(s) 6, 144
Bst4CI ACNGT 3 cut(s) 66, 448, 1093
Bst6I CTCTTC 2 cut(s) 786, 894
BstACI GRCGYC 2 cut(s) 73, 267
BstC8I GCNNGC 4 cut(s) 614, 772, 807, 1368
BstDEI CTNAG 1 cut(s) 163
BstF5I GGATG 6 cut(s) 478, 503, 913, 1222, 1437, 1523
BstFNI CGCG 3 cut(s) 178, 230, 621
BstH2I RGCGCY 1 cut(s) 270
BstHHI GCGC 5 cut(s) 35, 269, 623, 728, 770
BstKTI GATC 6 cut(s) 28, 134, 1205, 1223, 1235, 1262
BstMAI GTCTC 2 cut(s) 72, 1477
BstMBI GATC 6 cut(s) 25, 131, 1202, 1220, 1232, 1259
BstMWI GCNNNNNNNGC 5 cut(s) 79, 184, 221, 618, 1372
BstNI CCWGG 2 cut(s) 6, 144
BstSCI CCNGG 2 cut(s) 4, 142
BstSFI CTRYAG 1 cut(s) 514
BstSLI GKGCMC 2 cut(s) 109, 618
BstUI CGCG 3 cut(s) 178, 230, 621
BstX2I RGATCY 1 cut(s) 1220
BstYI RGATCY 1 cut(s) 1220
BstZ17I GTATAC 1 cut(s) 511
Bsu15I ATCGAT 2 cut(s) 130, 523
BsuI GTATCC 1 cut(s) 436
BsuRI GGCC 4 cut(s) 124, 402, 599, 949
BsuTUI ATCGAT 2 cut(s) 130, 523
BtsCI GGATG 6 cut(s) 478, 503, 913, 1222, 1437, 1523
BtsIMutI CAGTG 1 cut(s) 1566
Cac8I GCNNGC 4 cut(s) 614, 772, 807, 1368
CaiI CAGNNNCTG 1 cut(s) 1568
CfoI GCGC 5 cut(s) 35, 269, 623, 728, 770
Cfr10I RCCGGY 1 cut(s) 120
Cfr13I GGNCC 3 cut(s) 16, 400, 947
ClaI ATCGAT 2 cut(s) 130, 523
CseI GACGC 1 cut(s) 62
CviAII CATG 6 cut(s) 101, 368, 860, 998, 1400, 1600
DdeI CTNAG 1 cut(s) 163
DinI GGCGCC 1 cut(s) 268
DpnI GATC 6 cut(s) 27, 133, 1204, 1222, 1234, 1261
DpnII GATC 6 cut(s) 25, 131, 1202, 1220, 1232, 1259
DraIII CACNNNGTG 1 cut(s) 830
Eam1104I CTCTTC 2 cut(s) 786, 894
EarI CTCTTC 2 cut(s) 786, 894
Eco147I AGGCCT 1 cut(s) 599
Eco24I GRGCYC 1 cut(s) 752
Eco47I GGWCC 1 cut(s) 16
Eco57I CTGAAG 1 cut(s) 1414
Eco88I CYCGRG 1 cut(s) 378
EcoO109I RGGNCCY 2 cut(s) 16, 947
EcoRII CCWGG 2 cut(s) 4, 142
EcoT22I ATGCAT 2 cut(s) 42, 1405
EcoT38I GRGCYC 1 cut(s) 752
EgeI GGCGCC 1 cut(s) 268
EheI GGCGCC 1 cut(s) 268
FaeI CATG 6 cut(s) 104, 371, 863, 1001, 1403, 1603
FaqI GGGAC 1 cut(s) 378
FatI CATG 6 cut(s) 100, 367, 859, 997, 1399, 1599
FauI CCCGC 1 cut(s) 1359
FbaI TGATCA 2 cut(s) 1202, 1259
FblI GTMKAC 1 cut(s) 510
Fnu4HI GCNGC 3 cut(s) 98, 176, 270
FokI GGATG 6 cut(s) 485, 510, 920, 1229, 1444, 1530
FriOI GRGCYC 1 cut(s) 752
Fsp4HI GCNGC 3 cut(s) 98, 176, 270
FspBI CTAG 2 cut(s) 1075, 1426
GlaI GCGC 5 cut(s) 34, 268, 622, 727, 769
GluI GCNGC 3 cut(s) 98, 176, 270
GsuI CTGGAG 2 cut(s) 126, 287
HaeII RGCGCY 1 cut(s) 270
HaeIII GGCC 4 cut(s) 124, 402, 599, 949
HapII CCGG 5 cut(s) 92, 121, 495, 810, 969
HgaI GACGC 1 cut(s) 62
HhaI GCGC 5 cut(s) 35, 269, 623, 728, 770
Hin1I GRCGYC 2 cut(s) 73, 267
Hin1II CATG 6 cut(s) 104, 371, 863, 1001, 1403, 1603
Hin6I GCGC 5 cut(s) 33, 267, 621, 726, 768
HinP1I GCGC 5 cut(s) 33, 267, 621, 726, 768
HindIII AAGCTT 3 cut(s) 354, 1156, 1194
HinfI GANTC 4 cut(s) 161, 419, 821, 1327
HpaII CCGG 5 cut(s) 92, 121, 495, 810, 969
HphI GGTGA 4 cut(s) 693, 830, 1254, 1322
Hpy166II GTNNAC 4 cut(s) 77, 107, 511, 616
Hpy188I TCNGA 4 cut(s) 53, 1150, 1181, 1207
Hpy188III TCNNGA 8 cut(s) 304, 332, 363, 456, 1200, 1384, 1440, 1545
Hpy8I GTNNAC 4 cut(s) 77, 107, 511, 616
Hpy99I CGWCG 1 cut(s) 156
HpyAV CCTTC 6 cut(s) 476, 683, 1072, 1164, 1316, 1526
HpyCH4III ACNGT 3 cut(s) 66, 448, 1093
HpyCH4IV ACGT 1 cut(s) 1300
HpyF10VI GCNNNNNNNGC 5 cut(s) 79, 184, 221, 618, 1372
HpyF3I CTNAG 1 cut(s) 163
HpySE526I ACGT 1 cut(s) 1300
Hsp92I GRCGYC 2 cut(s) 73, 267
Hsp92II CATG 6 cut(s) 104, 371, 863, 1001, 1403, 1603
HspAI GCGC 5 cut(s) 33, 267, 621, 726, 768
KasI GGCGCC 1 cut(s) 266
Ksp22I TGATCA 2 cut(s) 1202, 1259
Kzo9I GATC 6 cut(s) 25, 131, 1202, 1220, 1232, 1259
LmnI GCTCC 2 cut(s) 94, 1004
LweI GCATC 2 cut(s) 908, 1422
MaeI CTAG 2 cut(s) 1075, 1426
MaeII ACGT 1 cut(s) 1300
MaeIII GTNAC 6 cut(s) 231, 818, 1133, 1225, 1388, 1448
MalI GATC 6 cut(s) 27, 133, 1204, 1222, 1234, 1261
MboI GATC 6 cut(s) 25, 131, 1202, 1220, 1232, 1259
MboII GAAGA 5 cut(s) 351, 414, 803, 911, 1292
MflI RGATCY 1 cut(s) 1220
MhlI GDGCHC 3 cut(s) 109, 618, 752
Mly113I GGCGCC 1 cut(s) 267
MlyI GAGTC 2 cut(s) 155, 815
MmeI TCCRAC 1 cut(s) 844
Mph1103I ATGCAT 2 cut(s) 42, 1405
MroXI GAANNNNTTC 1 cut(s) 1105
MseI TTAA 5 cut(s) 406, 778, 1036, 1164, 1573
MslI CAYNNNNRTG 2 cut(s) 210, 1408
MspA1I CMGCKG 1 cut(s) 1335
MspI CCGG 5 cut(s) 92, 121, 495, 810, 969
MspR9I CCNGG 2 cut(s) 6, 144
Mva1269I GAATGC 1 cut(s) 40
MvaI CCWGG 2 cut(s) 6, 144
MvnI CGCG 3 cut(s) 178, 230, 621
MwoI GCNNNNNNNGC 5 cut(s) 79, 184, 221, 618, 1372
NarI GGCGCC 1 cut(s) 267
NdeII GATC 6 cut(s) 25, 131, 1202, 1220, 1232, 1259
NlaIII CATG 6 cut(s) 104, 371, 863, 1001, 1403, 1603
NlaIV GGNNCC 4 cut(s) 96, 268, 804, 1006
NmeAIII GCCGAG 2 cut(s) 49, 269
NmuCI GTSAC 2 cut(s) 818, 1388
NsiI ATGCAT 2 cut(s) 42, 1405
PceI AGGCCT 1 cut(s) 599
PcsI WCGNNNNNNNCGW 1 cut(s) 241
PctI GAATGC 1 cut(s) 40
PdmI GAANNNNTTC 1 cut(s) 1105
PfeI GAWTC 2 cut(s) 419, 1327
PflFI GACNNNGTC 1 cut(s) 164
PkrI GCNGC 3 cut(s) 99, 177, 271
PleI GAGTC 2 cut(s) 155, 815
PluTI GGCGCC 1 cut(s) 270
PpsI GAGTC 2 cut(s) 155, 815
PpuMI RGGWCCY 1 cut(s) 16
PshBI ATTAAT 1 cut(s) 1573
PsiI TTATAA 2 cut(s) 931, 1479
Psp5II RGGWCCY 1 cut(s) 16
Psp6I CCWGG 2 cut(s) 4, 142
PspGI CCWGG 2 cut(s) 4, 142
PspN4I GGNNCC 4 cut(s) 96, 268, 804, 1006
PspPI GGNCC 3 cut(s) 16, 400, 947
PspPPI RGGWCCY 1 cut(s) 16
PstNI CAGNNNCTG 1 cut(s) 1568
PsuI RGATCY 1 cut(s) 1220
PsyI GACNNNGTC 1 cut(s) 164
RseI CAYNNNNRTG 2 cut(s) 210, 1408
SaqAI TTAA 5 cut(s) 406, 778, 1036, 1164, 1573
SatI GCNGC 3 cut(s) 98, 176, 270
Sau3AI GATC 6 cut(s) 25, 131, 1202, 1220, 1232, 1259
Sau96I GGNCC 3 cut(s) 16, 400, 947
SchI GAGTC 2 cut(s) 155, 815
ScrFI CCNGG 2 cut(s) 6, 144
SduI GDGCHC 3 cut(s) 109, 618, 752
SfaNI GCATC 2 cut(s) 908, 1422
SfcI CTRYAG 1 cut(s) 514
SfoI GGCGCC 1 cut(s) 268
SinI GGWCC 1 cut(s) 16
SmiMI CAYNNNNRTG 2 cut(s) 210, 1408
SmlI CTYRAG 1 cut(s) 942
SmoI CTYRAG 1 cut(s) 942
SseBI AGGCCT 1 cut(s) 599
SsiI CCGC 7 cut(s) 80, 98, 176, 270, 619, 1333, 1366
SspDI GGCGCC 1 cut(s) 266
SspMI CTAG 2 cut(s) 1075, 1426
StuI AGGCCT 1 cut(s) 599
StyD4I CCNGG 2 cut(s) 4, 142
TaaI ACNGT 3 cut(s) 66, 448, 1093
TaiI ACGT 1 cut(s) 1303
TaqI TCGA 4 cut(s) 130, 151, 523, 916
TauI GCSGC 3 cut(s) 100, 178, 272
TfiI GAWTC 2 cut(s) 419, 1327
Tru1I TTAA 5 cut(s) 406, 778, 1036, 1164, 1573
Tru9I TTAA 5 cut(s) 406, 778, 1036, 1164, 1573
TscAI CASTG 1 cut(s) 1573
TseFI GTSAC 2 cut(s) 818, 1388
Tsp45I GTSAC 2 cut(s) 818, 1388
TspDTI ATGAA 6 cut(s) 194, 702, 804, 848, 900, 1021
TspRI CASTG 1 cut(s) 1573
Tth111I GACNNNGTC 1 cut(s) 164
VneI GTGCAC 2 cut(s) 105, 614
VpaK11BI GGWCC 1 cut(s) 16
VspI ATTAAT 1 cut(s) 1573
XapI RAATTY 2 cut(s) 335, 1117
XmiI GTMKAC 1 cut(s) 510
XmnI GAANNNNTTC 1 cut(s) 1105
XspI CTAG 2 cut(s) 1075, 1426
Zsp2I ATGCAT 2 cut(s) 42, 1405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.